Wall clock time and date at job start Tue Mar 31 2020 18:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09000 * 112.95553 * 287.13515 * 4 3 2 6 6 C 1.53939 * 113.75840 * 155.49949 * 4 3 2 7 7 C 1.53940 * 86.33697 * 221.95805 * 6 4 3 8 8 N 1.47956 * 113.76154 * 58.93689 * 4 3 2 9 9 C 1.46903 * 110.99663 * 251.90016 * 8 4 3 10 10 C 1.50700 * 109.47088 * 169.99976 * 9 8 4 11 11 C 1.38674 * 120.41978 * 89.99458 * 10 9 8 12 12 C 1.38625 * 118.42190 * 180.02562 * 11 10 9 13 13 C 1.38232 * 119.16088 * 0.02562 * 12 11 10 14 14 N 1.31857 * 120.76198 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72650 * 359.71186 * 14 13 12 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09002 * 113.73109 * 336.31544 * 6 4 3 34 34 H 1.08997 * 113.73385 * 107.49297 * 6 4 3 35 35 H 1.09003 * 113.75274 * 138.03478 * 7 6 4 36 36 H 1.08997 * 113.75745 * 269.28976 * 7 6 4 37 37 H 1.09001 * 109.46722 * 289.99908 * 9 8 4 38 38 H 1.09004 * 109.47271 * 50.00163 * 9 8 4 39 39 H 1.08000 * 120.78545 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.42267 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.61718 * 180.02562 * 13 12 11 42 42 H 1.07997 * 119.61522 * 180.30585 * 15 14 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5534 2.0712 1.9419 6 6 3.6663 2.6440 1.5998 7 6 4.0090 1.8245 2.8571 8 7 3.2271 0.7319 2.2374 9 6 2.3732 0.0668 3.2306 10 6 3.1241 -1.0847 3.8481 11 6 3.8939 -0.8917 4.9852 12 6 4.5677 -1.9796 5.5183 13 6 4.4510 -3.2118 4.9026 14 7 3.7097 -3.3583 3.8221 15 6 3.0501 -2.3471 3.2912 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 4.4004 2.5478 0.7998 34 1 3.3989 3.6798 1.8086 35 1 5.0709 1.6011 2.9596 36 1 3.5671 2.2188 3.7722 37 1 2.0974 0.7794 4.0079 38 1 1.4723 -0.3064 2.7435 39 1 3.9675 0.0832 5.4441 40 1 5.1761 -1.8661 6.4034 41 1 4.9725 -4.0645 5.3119 42 1 2.4490 -2.5067 2.4083 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:10 Heat of formation + Delta-G solvation = 50.031217 kcal Electronic energy + Delta-G solvation = -27697.673031 eV Core-core repulsion = 24036.141684 eV Total energy + Delta-G solvation = -3661.531347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64809 -39.56902 -38.79897 -35.18347 -33.41351 -32.32957 -31.68598 -30.46540 -29.07554 -28.05346 -26.29335 -25.49718 -24.75174 -23.54044 -23.14686 -21.49821 -19.80742 -19.17491 -17.55807 -16.91050 -16.61878 -16.36654 -16.09426 -15.89436 -15.71634 -15.10772 -14.83549 -14.69528 -14.03950 -13.75471 -13.45144 -13.33374 -13.11601 -13.04158 -12.96221 -12.78706 -12.67227 -12.39202 -12.19601 -12.01092 -11.67242 -11.61268 -11.27477 -11.14391 -10.95949 -10.88777 -10.84704 -10.47639 -9.75351 -9.56195 -9.25055 -9.08086 -8.88295 -8.83151 -8.68302 -8.36155 -8.34357 -6.77530 -6.18869 -3.88750 1.38332 1.57214 2.81030 3.14925 3.27207 3.47632 3.61640 3.65391 3.80034 4.23129 4.32820 4.44860 4.56842 4.71135 4.73016 4.80735 4.95195 4.97879 5.04475 5.10262 5.11672 5.16428 5.19996 5.21681 5.28605 5.35847 5.44019 5.45133 5.49193 5.56226 5.62706 5.67109 5.81026 5.86441 5.89469 6.01270 6.02293 6.10279 6.28491 6.29964 6.51991 6.70741 6.94477 7.05974 7.59644 8.03956 8.44629 8.50567 8.66149 9.28729 10.90429 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.005089 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.428469 B = 5500.405412 C = 7267.236748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.139 3.861 4 C 0.012 3.988 5 H 0.076 0.924 6 C -0.135 4.135 7 C 0.000 4.000 8 N -0.443 5.443 9 C 0.070 3.930 10 C -0.134 4.134 11 C -0.074 4.074 12 C -0.185 4.185 13 C 0.094 3.906 14 N -0.463 5.463 15 C 0.140 3.860 16 C 0.528 3.472 17 O -0.489 6.489 18 C -0.129 4.129 19 S -0.127 6.127 20 C -0.520 4.520 21 H 0.086 0.914 22 C 0.100 3.900 23 N -0.883 5.883 24 Si 0.854 3.146 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.237 1.237 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.891 22.798 7.726 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.361 5.361 3 C 0.015 3.985 4 C -0.099 4.099 5 H 0.093 0.907 6 C -0.173 4.173 7 C -0.129 4.129 8 N -0.165 5.165 9 C -0.059 4.059 10 C -0.137 4.137 11 C -0.101 4.101 12 C -0.205 4.205 13 C -0.064 4.064 14 N -0.171 5.171 15 C -0.018 4.018 16 C 0.314 3.686 17 O -0.360 6.360 18 C -0.279 4.279 19 S 0.099 5.901 20 C -0.668 4.668 21 H 0.104 0.896 22 C -0.109 4.109 23 N -0.520 5.520 24 Si 0.679 3.321 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.161 1.161 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.167 0.833 42 H 0.177 0.823 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.927 21.191 6.996 22.507 hybrid contribution -1.343 0.968 1.045 1.958 sum 1.583 22.160 8.040 23.627 Atomic orbital electron populations 1.21770 0.80109 1.02826 1.01796 1.47739 1.06312 1.05682 1.76337 1.21285 0.98184 0.84817 0.94185 1.23924 0.96153 0.92873 0.96927 0.90652 1.23321 0.97603 0.97559 0.98814 1.23920 1.00980 0.91977 0.96015 1.68711 1.15448 1.17341 1.14983 1.21456 0.95642 0.94429 0.94357 1.20662 1.00322 0.96340 0.96326 1.21289 0.95186 0.98569 0.95045 1.22011 1.02143 0.94355 1.01986 1.22865 0.95225 0.96485 0.91790 1.67875 1.05896 1.34007 1.09295 1.23034 0.94485 0.87150 0.97156 1.20141 0.88093 0.84264 0.76065 1.90730 1.13157 1.86331 1.45801 1.23408 1.03343 0.96094 1.05090 1.84932 1.11149 0.96971 1.97013 1.22316 0.94827 0.91086 1.58522 0.89606 1.24648 0.98315 0.94872 0.93053 1.69942 1.34737 0.98818 1.48475 0.86770 0.85662 0.79488 0.80195 1.18803 1.20303 1.16059 0.92689 0.91693 0.90868 0.89216 0.90598 0.88804 0.91125 0.89505 0.91717 0.93457 0.90261 0.86023 0.85479 0.83275 0.82265 0.89340 0.88876 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.24 59.85 0.61 1.36 16 2 N -0.62 -7.99 2.85 -181.57 -0.52 -8.50 16 3 C 0.14 1.48 5.56 -4.04 -0.02 1.46 16 4 C 0.01 0.11 3.55 -66.66 -0.24 -0.12 16 5 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 6 C -0.13 -1.11 7.84 -25.79 -0.20 -1.31 16 7 C 0.00 0.00 7.95 -2.77 -0.02 -0.02 16 8 N -0.44 -5.51 4.91 -232.13 -1.14 -6.65 16 9 C 0.07 0.87 4.95 -4.97 -0.02 0.85 16 10 C -0.13 -2.02 5.46 -104.48 -0.57 -2.59 16 11 C -0.07 -0.96 9.86 -39.28 -0.39 -1.35 16 12 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 13 C 0.09 1.49 11.18 -17.54 -0.20 1.29 16 14 N -0.46 -9.30 10.36 -13.25 -0.14 -9.44 16 15 C 0.14 2.65 10.86 -17.55 -0.19 2.46 16 16 C 0.53 9.30 6.87 -10.98 -0.08 9.23 16 17 O -0.49 -10.35 14.87 5.56 0.08 -10.26 16 18 C -0.13 -2.52 3.88 36.01 0.14 -2.38 16 19 S -0.13 -3.26 17.64 -107.50 -1.90 -5.15 16 20 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 21 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 22 C 0.10 2.98 5.50 -17.43 -0.10 2.88 16 23 N -0.88 -27.21 13.97 55.49 0.78 -26.43 16 24 Si 0.85 22.74 27.74 -169.99 -4.71 18.02 16 25 H -0.26 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.24 -6.31 6.74 56.52 0.38 -5.92 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 31 H 0.09 1.16 7.19 -51.93 -0.37 0.79 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.52 7.48 -51.93 -0.39 0.13 16 37 H 0.05 0.49 7.33 -51.93 -0.38 0.10 16 38 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.16 3.31 5.47 -52.49 -0.29 3.03 16 43 H 0.09 1.63 7.15 -51.92 -0.37 1.26 16 44 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -36.14 381.31 -9.91 -46.05 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.75 Total: 2.53 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.36 Total: -5.90 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -1.02 Total: -51.03 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.90 Total: -5.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.14 -9.91 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.085 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds