Wall clock time and date at job start Tue Mar 31 2020 18:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09000 * 112.95553 * 287.13515 * 4 3 2 6 6 C 1.53939 * 113.75840 * 155.49949 * 4 3 2 7 7 C 1.53940 * 86.33697 * 221.95805 * 6 4 3 8 8 N 1.47956 * 113.76154 * 58.93689 * 4 3 2 9 9 C 1.46903 * 110.99663 * 251.90016 * 8 4 3 10 10 C 1.50700 * 109.47088 * 169.99976 * 9 8 4 11 11 C 1.38674 * 120.41978 * 89.99458 * 10 9 8 12 12 C 1.38625 * 118.42190 * 180.02562 * 11 10 9 13 13 C 1.38232 * 119.16088 * 0.02562 * 12 11 10 14 14 N 1.31857 * 120.76198 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72650 * 359.71186 * 14 13 12 16 16 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 17 17 O 1.21279 * 120.00410 * 179.97438 * 16 2 1 18 18 C 1.50703 * 119.99541 * 359.97438 * 16 2 1 19 19 S 1.81004 * 109.46790 * 180.02562 * 18 16 2 20 20 C 1.76197 * 99.99958 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00243 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00041 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99629 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99851 * 24 22 20 26 26 H 1.48504 * 109.47049 * 209.99718 * 24 22 20 27 27 H 1.48500 * 109.47362 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 29 29 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 30 30 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.09002 * 113.73109 * 336.31544 * 6 4 3 34 34 H 1.08997 * 113.73385 * 107.49297 * 6 4 3 35 35 H 1.09003 * 113.75274 * 138.03478 * 7 6 4 36 36 H 1.08997 * 113.75745 * 269.28976 * 7 6 4 37 37 H 1.09001 * 109.46722 * 289.99908 * 9 8 4 38 38 H 1.09004 * 109.47271 * 50.00163 * 9 8 4 39 39 H 1.08000 * 120.78545 * 359.97438 * 11 10 9 40 40 H 1.08001 * 120.42267 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.61718 * 180.02562 * 13 12 11 42 42 H 1.07997 * 119.61522 * 180.30585 * 15 14 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 18 16 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 18 16 2 45 45 H 0.97006 * 120.00094 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5534 2.0712 1.9419 6 6 3.6663 2.6440 1.5998 7 6 4.0090 1.8245 2.8571 8 7 3.2271 0.7319 2.2374 9 6 2.3732 0.0668 3.2306 10 6 3.1241 -1.0847 3.8481 11 6 3.8939 -0.8917 4.9852 12 6 4.5677 -1.9796 5.5183 13 6 4.4510 -3.2118 4.9026 14 7 3.7097 -3.3583 3.8221 15 6 3.0501 -2.3471 3.2912 16 6 2.1389 -1.1672 -0.0005 17 8 3.3517 -1.1672 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5616 -3.8480 -0.0005 20 6 1.4415 -5.2082 -0.0013 21 1 0.3762 -5.0305 -0.0020 22 6 1.9282 -6.5081 -0.0020 23 7 1.0915 -7.5241 -0.0021 24 14 3.7708 -6.8154 -0.0015 25 1 4.2585 -6.8978 1.3987 26 1 4.0598 -8.0924 -0.7023 27 1 4.4588 -5.7004 -0.7004 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8900 0.5139 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 4.4004 2.5478 0.7998 34 1 3.3989 3.6798 1.8086 35 1 5.0709 1.6011 2.9596 36 1 3.5671 2.2188 3.7722 37 1 2.0974 0.7794 4.0079 38 1 1.4723 -0.3064 2.7435 39 1 3.9675 0.0832 5.4441 40 1 5.1761 -1.8661 6.4034 41 1 4.9725 -4.0645 5.3119 42 1 2.4490 -2.5067 2.4083 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.4316 -8.4326 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:09 Heat of formation + Delta-G solvation = 24.258217 kcal Electronic energy + Delta-G solvation = -27698.790632 eV Core-core repulsion = 24036.141684 eV Total energy + Delta-G solvation = -3662.648948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58694 -40.72467 -39.93958 -36.35791 -34.65171 -34.45870 -32.79936 -31.70634 -30.08863 -29.10775 -27.82715 -27.20430 -25.68726 -24.56348 -24.18113 -22.53387 -20.77768 -20.33278 -19.48779 -18.02853 -17.91835 -17.45087 -17.19645 -16.99666 -16.91713 -16.80673 -16.16724 -15.76695 -15.68017 -14.99348 -14.85011 -14.63921 -14.38484 -14.26909 -14.03043 -13.89240 -13.86166 -13.46032 -13.34966 -13.15111 -13.06855 -13.01790 -12.74140 -12.47460 -12.34251 -12.12266 -11.87923 -11.79140 -11.62748 -11.16270 -10.71164 -10.65250 -10.43988 -10.22169 -9.85381 -9.73955 -9.30724 -8.90148 -8.51026 -6.16794 0.24397 0.46361 0.99178 1.31483 1.44694 1.55137 1.77202 2.19445 2.25444 2.74359 2.84602 2.88870 3.20082 3.59191 3.70036 3.73208 3.84216 3.88185 3.98764 4.10330 4.14292 4.16282 4.27994 4.34703 4.37933 4.41625 4.44551 4.50935 4.52508 4.65511 4.73411 4.83000 4.87292 4.95785 4.96569 5.02096 5.02384 5.20848 5.29191 5.33919 5.54765 5.71795 5.76737 5.88987 6.11536 6.20697 6.42950 6.96334 7.24183 7.34722 8.61846 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.005089 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.428469 B = 5500.405412 C = 7267.236748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.135 3.865 4 C 0.016 3.984 5 H 0.102 0.898 6 C -0.121 4.121 7 C 0.001 3.999 8 N -0.483 5.483 9 C 0.076 3.924 10 C -0.132 4.132 11 C -0.071 4.071 12 C -0.168 4.168 13 C 0.069 3.931 14 N -0.520 5.520 15 C 0.102 3.898 16 C 0.533 3.467 17 O -0.532 6.532 18 C -0.112 4.112 19 S -0.159 6.159 20 C -0.524 4.524 21 H 0.060 0.940 22 C 0.053 3.947 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.258 1.258 27 H -0.241 1.241 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 26.820 9.195 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.012 3.988 4 C -0.094 4.094 5 H 0.119 0.881 6 C -0.159 4.159 7 C -0.127 4.127 8 N -0.206 5.206 9 C -0.053 4.053 10 C -0.134 4.134 11 C -0.097 4.097 12 C -0.187 4.187 13 C -0.088 4.088 14 N -0.229 5.229 15 C -0.055 4.055 16 C 0.319 3.681 17 O -0.407 6.407 18 C -0.263 4.263 19 S 0.068 5.932 20 C -0.672 4.672 21 H 0.078 0.922 22 C -0.152 4.152 23 N -0.556 5.556 24 Si 0.731 3.269 25 H -0.194 1.194 26 H -0.182 1.182 27 H -0.165 1.165 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.180 0.820 40 H 0.186 0.814 41 H 0.181 0.819 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.988 25.253 8.452 26.797 hybrid contribution -1.470 -0.128 0.633 1.606 sum 1.518 25.125 9.084 26.760 Atomic orbital electron populations 1.22044 0.77724 1.04264 1.03103 1.47681 1.07768 1.04883 1.74118 1.21547 0.97408 0.84190 0.95624 1.23991 0.97483 0.92307 0.95610 0.88066 1.23216 0.96327 0.98773 0.97607 1.23982 0.99987 0.91231 0.97542 1.68698 1.16700 1.19205 1.15957 1.21432 0.94729 0.94049 0.95068 1.20918 1.00252 0.95551 0.96693 1.21750 0.93727 1.00250 0.93961 1.22418 1.01107 0.92941 1.02282 1.23239 0.95456 0.98698 0.91428 1.67686 1.07818 1.35788 1.11574 1.22761 0.96087 0.89051 0.97632 1.19683 0.87352 0.84791 0.76242 1.90713 1.14709 1.86884 1.48394 1.23343 1.01967 0.95154 1.05790 1.84846 1.12915 0.98245 1.97147 1.22484 0.94384 0.92754 1.57545 0.92199 1.25393 1.01945 0.94869 0.93015 1.70008 1.36435 0.99412 1.49750 0.85959 0.81205 0.79880 0.79847 1.19420 1.18184 1.16477 0.91389 0.87865 0.91924 0.92009 0.86642 0.90251 0.88042 0.91042 0.89210 0.90484 0.91651 0.82012 0.81388 0.81876 0.85290 0.88630 0.88035 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 10.24 127.77 1.31 2.47 16 2 N -0.61 -14.61 2.85 -846.74 -2.41 -17.02 16 3 C 0.13 2.53 5.56 86.38 0.48 3.01 16 4 C 0.02 0.25 3.55 45.02 0.16 0.41 16 5 H 0.10 1.12 7.93 -2.39 -0.02 1.10 16 6 C -0.12 -1.57 7.84 31.24 0.25 -1.32 16 7 C 0.00 0.02 7.95 86.41 0.69 0.70 16 8 N -0.48 -11.01 4.91 -888.31 -4.36 -15.37 16 9 C 0.08 1.73 4.95 85.56 0.42 2.15 16 10 C -0.13 -3.86 5.46 -19.77 -0.11 -3.97 16 11 C -0.07 -1.62 9.86 22.47 0.22 -1.40 16 12 C -0.17 -3.96 10.11 22.36 0.23 -3.73 16 13 C 0.07 2.19 11.18 84.69 0.95 3.14 16 14 N -0.52 -21.90 10.36 -195.84 -2.03 -23.93 16 15 C 0.10 4.04 10.86 84.67 0.92 4.95 16 16 C 0.53 19.00 6.87 87.66 0.60 19.60 16 17 O -0.53 -23.20 14.87 -3.02 -0.04 -23.24 16 18 C -0.11 -4.51 3.88 71.24 0.28 -4.23 16 19 S -0.16 -8.46 17.64 -56.49 -1.00 -9.46 16 20 C -0.52 -31.99 10.04 67.95 0.68 -31.31 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 22 C 0.05 3.28 5.50 84.86 0.47 3.74 16 23 N -0.92 -58.25 13.97 21.65 0.30 -57.95 16 24 Si 0.91 48.61 27.74 68.60 1.90 50.52 16 25 H -0.27 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 27 H -0.24 -12.94 6.74 99.48 0.67 -12.27 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 30 H 0.06 1.18 6.44 -2.38 -0.02 1.17 16 31 H 0.06 1.55 7.19 -2.39 -0.02 1.53 16 32 H 0.12 1.27 8.07 -2.38 -0.02 1.25 16 33 H 0.08 1.27 7.94 -2.39 -0.02 1.26 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 0.98 7.48 -2.39 -0.02 0.96 16 37 H 0.08 1.25 7.33 -2.39 -0.02 1.23 16 38 H 0.06 1.63 8.03 -2.38 -0.02 1.61 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.13 5.74 5.47 -2.91 -0.02 5.73 16 43 H 0.10 3.70 7.15 -2.40 -0.02 3.68 16 44 H 0.10 3.88 8.11 -2.40 -0.02 3.86 16 45 H 0.28 16.22 8.31 -92.70 -0.77 15.45 16 Total: -1.00 -85.44 381.31 0.85 -84.59 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.95 Total: 17.65 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 7.54 Total: -5.78 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -8.50 Total: -114.27 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.04 Total: -23.24 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.90 Total: 50.52 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.00 Total: -9.46 kcal Total: -85.44 0.85 -84.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.847 kcal (2) G-P(sol) polarization free energy of solvation -85.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds