Wall clock time and date at job start Tue Mar 31 2020 18:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00315 * 2 1 4 4 C 1.53002 * 109.46910 * 269.99752 * 3 2 1 5 5 H 1.08998 * 112.96347 * 74.66494 * 4 3 2 6 6 C 1.53934 * 113.76036 * 206.31520 * 4 3 2 7 7 C 1.53933 * 86.34390 * 138.03344 * 6 4 3 8 8 N 1.47963 * 113.75792 * 303.01869 * 4 3 2 9 9 C 1.46896 * 111.00105 * 108.10126 * 8 4 3 10 10 C 1.50701 * 109.47512 * 170.00027 * 9 8 4 11 11 C 1.38671 * 120.41895 * 89.99831 * 10 9 8 12 12 C 1.38631 * 118.42001 * 180.02562 * 11 10 9 13 13 C 1.38222 * 119.16281 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76344 * 0.02562 * 13 12 11 15 15 C 1.31884 * 121.72329 * 359.69753 * 14 13 12 16 16 C 1.34778 * 119.99660 * 179.97438 * 2 1 3 17 17 O 1.21282 * 120.00178 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00172 * 0.02562 * 16 2 1 19 19 S 1.81000 * 109.47042 * 179.97438 * 18 16 2 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 0.28020 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.08998 * 109.47580 * 270.00686 * 1 2 3 29 29 H 1.09003 * 109.47270 * 30.00531 * 1 2 3 30 30 H 1.09009 * 109.47193 * 150.00280 * 1 2 3 31 31 H 1.08996 * 109.47013 * 29.99446 * 3 2 1 32 32 H 1.08997 * 109.47424 * 149.99972 * 3 2 1 33 33 H 1.09006 * 113.73089 * 252.39635 * 6 4 3 34 34 H 1.09000 * 113.73686 * 23.56543 * 6 4 3 35 35 H 1.09011 * 113.75597 * 90.59516 * 7 6 4 36 36 H 1.08996 * 113.76015 * 221.84424 * 7 6 4 37 37 H 1.09003 * 109.47425 * 289.99997 * 9 8 4 38 38 H 1.08997 * 109.47563 * 49.99811 * 9 8 4 39 39 H 1.08003 * 120.79164 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.41596 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.61770 * 179.97438 * 13 12 11 42 42 H 1.08005 * 119.61894 * 180.31227 * 15 14 13 43 43 H 1.09005 * 109.47194 * 59.99652 * 18 16 2 44 44 H 1.09000 * 109.46904 * 299.99694 * 18 16 2 45 45 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 1.5601 2.1002 -1.9320 6 6 3.6922 2.6080 -1.6064 7 6 3.9990 1.7854 -2.8708 8 7 3.1874 0.7119 -2.2505 9 6 2.3029 0.0804 -3.2388 10 6 3.1260 -0.7407 -4.1976 11 6 3.3915 -2.0752 -3.9303 12 6 4.1535 -2.7915 -4.8404 13 6 4.6195 -2.1563 -5.9761 14 7 4.3473 -0.8853 -6.1978 15 6 3.6213 -0.1747 -5.3568 16 6 2.1388 -1.1673 0.0005 17 8 3.3516 -1.1674 0.0001 18 6 1.3852 -2.4724 0.0005 19 16 2.5614 -3.8481 0.0005 20 6 1.4413 -5.2082 0.0013 21 1 0.3760 -5.0305 0.0012 22 6 1.9280 -6.5081 0.0010 23 7 1.0911 -7.5242 0.0021 24 14 3.7705 -6.8156 0.0076 25 1 4.2630 -6.9014 -1.3907 26 1 4.4561 -5.6990 0.7063 27 1 4.0570 -8.0908 0.7125 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1383 0.5138 33 1 3.4539 3.6522 -1.8093 34 1 4.4294 2.4872 -0.8127 35 1 3.5592 2.1966 -3.7796 36 1 5.0530 1.5327 -2.9853 37 1 1.5891 -0.5655 -2.7274 38 1 1.7648 0.8515 -3.7901 39 1 3.0144 -2.5453 -3.0340 40 1 4.3795 -3.8328 -4.6645 41 1 5.2142 -2.7071 -6.6898 42 1 3.4148 0.8628 -5.5746 43 1 0.7588 -2.5303 -0.8897 44 1 0.7583 -2.5299 0.8903 45 1 1.4313 -8.4327 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230815806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:13 Heat of formation + Delta-G solvation = 45.221025 kcal Electronic energy + Delta-G solvation = -27314.163724 eV Core-core repulsion = 23652.423792 eV Total energy + Delta-G solvation = -3661.739932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72204 -39.73051 -38.78454 -35.20803 -33.51951 -32.44899 -31.82140 -30.48993 -29.13222 -28.10111 -26.30958 -25.61104 -24.82354 -23.67055 -23.19748 -21.60782 -19.78724 -19.20897 -17.64376 -17.00391 -16.67691 -16.40250 -16.15648 -15.98516 -15.81048 -15.19312 -14.95363 -14.63330 -14.06131 -13.82168 -13.66156 -13.42452 -13.30757 -13.01902 -12.97148 -12.78689 -12.76179 -12.41330 -12.18856 -12.09067 -11.68063 -11.60657 -11.59843 -11.26544 -11.03245 -10.92960 -10.81850 -10.58155 -9.86790 -9.60441 -9.37879 -9.29060 -9.04416 -9.01494 -8.80954 -8.48198 -8.36158 -6.92156 -6.30224 -4.01477 1.16495 1.44830 2.74876 3.12280 3.21613 3.30463 3.49328 3.57638 3.74145 4.04348 4.31426 4.32320 4.44849 4.58697 4.66373 4.72087 4.85735 4.93985 5.01629 5.07886 5.08823 5.09658 5.17445 5.19698 5.26907 5.34908 5.39754 5.43466 5.48568 5.58463 5.64245 5.67284 5.69441 5.79054 5.85354 5.88153 6.01501 6.02084 6.24424 6.39483 6.45566 6.68541 6.80693 6.97490 7.57659 7.92878 8.01186 8.40554 8.63389 9.16314 10.79107 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.004794 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.076400 B = 5839.100368 C = 7874.850707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.139 3.861 4 C 0.012 3.988 5 H 0.076 0.924 6 C -0.135 4.135 7 C 0.001 3.999 8 N -0.442 5.442 9 C 0.070 3.930 10 C -0.129 4.129 11 C -0.043 4.043 12 C -0.167 4.167 13 C 0.091 3.909 14 N -0.492 5.492 15 C 0.097 3.903 16 C 0.530 3.470 17 O -0.492 6.492 18 C -0.122 4.122 19 S -0.139 6.139 20 C -0.521 4.521 21 H 0.086 0.914 22 C 0.097 3.903 23 N -0.881 5.881 24 Si 0.854 3.146 25 H -0.268 1.268 26 H -0.235 1.235 27 H -0.275 1.275 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 20.778 -6.032 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C 0.016 3.984 4 C -0.099 4.099 5 H 0.094 0.906 6 C -0.173 4.173 7 C -0.128 4.128 8 N -0.164 5.164 9 C -0.058 4.058 10 C -0.131 4.131 11 C -0.069 4.069 12 C -0.186 4.186 13 C -0.066 4.066 14 N -0.200 5.200 15 C -0.061 4.061 16 C 0.317 3.683 17 O -0.364 6.364 18 C -0.273 4.273 19 S 0.088 5.912 20 C -0.669 4.669 21 H 0.104 0.896 22 C -0.112 4.112 23 N -0.518 5.518 24 Si 0.679 3.321 25 H -0.193 1.193 26 H -0.159 1.159 27 H -0.200 1.200 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.673 20.387 -6.462 21.553 hybrid contribution -1.810 -0.360 0.230 1.860 sum 0.863 20.028 -6.232 20.993 Atomic orbital electron populations 1.21760 0.80110 1.02827 1.01736 1.47713 1.06299 1.05676 1.76244 1.21284 0.98147 0.84800 0.94213 1.23941 0.96304 0.92804 0.96808 0.90641 1.23322 0.97441 0.97771 0.98772 1.23882 1.00709 0.92222 0.96016 1.68832 1.14530 1.18708 1.14339 1.21446 0.94403 0.97380 0.92609 1.20640 1.00757 0.95324 0.96420 1.21764 0.93569 0.93161 0.98446 1.22252 0.99036 1.01944 0.95410 1.22708 0.97195 0.90737 0.95961 1.67631 1.13283 1.07775 1.31316 1.22485 0.94028 0.99189 0.90366 1.20102 0.88042 0.84234 0.75929 1.90716 1.13226 1.86372 1.46061 1.23335 1.03040 0.95779 1.05098 1.84783 1.11810 0.97332 1.97321 1.22330 0.94901 0.91000 1.58657 0.89554 1.24696 0.98373 0.94889 0.93214 1.69943 1.34771 0.98883 1.48154 0.86769 0.85516 0.79889 0.79894 1.19264 1.15866 1.20002 0.92737 0.91694 0.90905 0.90627 0.89252 0.91100 0.88807 0.91678 0.89520 0.89828 0.93731 0.83706 0.84504 0.83049 0.83873 0.89215 0.88964 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.84 0.61 1.35 16 2 N -0.62 -7.80 2.83 -181.58 -0.51 -8.31 16 3 C 0.14 1.47 5.59 -4.04 -0.02 1.44 16 4 C 0.01 0.12 3.58 -66.65 -0.24 -0.12 16 5 H 0.08 0.62 7.79 -51.93 -0.40 0.22 16 6 C -0.13 -1.14 7.84 -25.79 -0.20 -1.34 16 7 C 0.00 0.01 6.98 -2.64 -0.02 -0.01 16 8 N -0.44 -5.44 4.97 -231.15 -1.15 -6.59 16 9 C 0.07 0.85 5.00 -4.98 -0.02 0.83 16 10 C -0.13 -1.77 5.13 -104.48 -0.54 -2.31 16 11 C -0.04 -0.67 9.86 -39.28 -0.39 -1.06 16 12 C -0.17 -2.39 10.11 -39.44 -0.40 -2.79 16 13 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 14 N -0.49 -6.97 10.36 -13.25 -0.14 -7.11 16 15 C 0.10 1.25 10.17 -17.55 -0.18 1.08 16 16 C 0.53 9.10 7.00 -10.98 -0.08 9.03 16 17 O -0.49 -10.16 14.88 5.56 0.08 -10.08 16 18 C -0.12 -2.30 4.71 36.01 0.17 -2.13 16 19 S -0.14 -3.40 18.54 -107.50 -1.99 -5.39 16 20 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 21 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.27 13.97 55.49 0.78 -25.50 16 24 Si 0.85 21.48 27.74 -169.99 -4.72 16.77 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.23 -5.92 6.73 56.52 0.38 -5.54 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.07 0.72 6.44 -51.92 -0.33 0.39 16 31 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.09 1.14 7.15 -51.93 -0.37 0.77 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.86 7.92 -51.93 -0.41 0.45 16 35 H 0.07 0.56 7.15 -51.92 -0.37 0.18 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 38 H 0.04 0.45 7.64 -51.93 -0.40 0.05 16 39 H 0.15 2.56 8.06 -52.48 -0.42 2.13 16 40 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.14 1.49 7.49 -52.48 -0.39 1.10 16 43 H 0.09 1.59 7.40 -51.91 -0.38 1.20 16 44 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -34.01 383.22 -10.01 -44.01 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.85 Total: 3.12 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.28 Total: -6.69 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -1.02 Total: -47.51 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.01 -10.01 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.235 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds