Wall clock time and date at job start Tue Mar 31 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00315 * 2 1 4 4 C 1.53002 * 109.46910 * 269.99752 * 3 2 1 5 5 H 1.08998 * 112.96347 * 74.66494 * 4 3 2 6 6 C 1.53934 * 113.76036 * 206.31520 * 4 3 2 7 7 C 1.53933 * 86.34390 * 138.03344 * 6 4 3 8 8 N 1.47963 * 113.75792 * 303.01869 * 4 3 2 9 9 C 1.46896 * 111.00105 * 108.10126 * 8 4 3 10 10 C 1.50701 * 109.47512 * 170.00027 * 9 8 4 11 11 C 1.38671 * 120.41895 * 89.99831 * 10 9 8 12 12 C 1.38631 * 118.42001 * 180.02562 * 11 10 9 13 13 C 1.38222 * 119.16281 * 359.97438 * 12 11 10 14 14 N 1.31857 * 120.76344 * 0.02562 * 13 12 11 15 15 C 1.31884 * 121.72329 * 359.69753 * 14 13 12 16 16 C 1.34778 * 119.99660 * 179.97438 * 2 1 3 17 17 O 1.21282 * 120.00178 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00172 * 0.02562 * 16 2 1 19 19 S 1.81000 * 109.47042 * 179.97438 * 18 16 2 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 0.28020 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71945 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72142 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72250 * 24 22 20 28 28 H 1.08998 * 109.47580 * 270.00686 * 1 2 3 29 29 H 1.09003 * 109.47270 * 30.00531 * 1 2 3 30 30 H 1.09009 * 109.47193 * 150.00280 * 1 2 3 31 31 H 1.08996 * 109.47013 * 29.99446 * 3 2 1 32 32 H 1.08997 * 109.47424 * 149.99972 * 3 2 1 33 33 H 1.09006 * 113.73089 * 252.39635 * 6 4 3 34 34 H 1.09000 * 113.73686 * 23.56543 * 6 4 3 35 35 H 1.09011 * 113.75597 * 90.59516 * 7 6 4 36 36 H 1.08996 * 113.76015 * 221.84424 * 7 6 4 37 37 H 1.09003 * 109.47425 * 289.99997 * 9 8 4 38 38 H 1.08997 * 109.47563 * 49.99811 * 9 8 4 39 39 H 1.08003 * 120.79164 * 359.97438 * 11 10 9 40 40 H 1.08000 * 120.41596 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.61770 * 179.97438 * 13 12 11 42 42 H 1.08005 * 119.61894 * 180.31227 * 15 14 13 43 43 H 1.09005 * 109.47194 * 59.99652 * 18 16 2 44 44 H 1.09000 * 109.46904 * 299.99694 * 18 16 2 45 45 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 1.5601 2.1002 -1.9320 6 6 3.6922 2.6080 -1.6064 7 6 3.9990 1.7854 -2.8708 8 7 3.1874 0.7119 -2.2505 9 6 2.3029 0.0804 -3.2388 10 6 3.1260 -0.7407 -4.1976 11 6 3.3915 -2.0752 -3.9303 12 6 4.1535 -2.7915 -4.8404 13 6 4.6195 -2.1563 -5.9761 14 7 4.3473 -0.8853 -6.1978 15 6 3.6213 -0.1747 -5.3568 16 6 2.1388 -1.1673 0.0005 17 8 3.3516 -1.1674 0.0001 18 6 1.3852 -2.4724 0.0005 19 16 2.5614 -3.8481 0.0005 20 6 1.4413 -5.2082 0.0013 21 1 0.3760 -5.0305 0.0012 22 6 1.9280 -6.5081 0.0010 23 7 1.0911 -7.5242 0.0021 24 14 3.7705 -6.8156 0.0076 25 1 4.2630 -6.9014 -1.3907 26 1 4.4561 -5.6990 0.7063 27 1 4.0570 -8.0908 0.7125 28 1 -0.3634 0.0001 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1383 0.5138 33 1 3.4539 3.6522 -1.8093 34 1 4.4294 2.4872 -0.8127 35 1 3.5592 2.1966 -3.7796 36 1 5.0530 1.5327 -2.9853 37 1 1.5891 -0.5655 -2.7274 38 1 1.7648 0.8515 -3.7901 39 1 3.0144 -2.5453 -3.0340 40 1 4.3795 -3.8328 -4.6645 41 1 5.2142 -2.7071 -6.6898 42 1 3.4148 0.8628 -5.5746 43 1 0.7588 -2.5303 -0.8897 44 1 0.7583 -2.5299 0.8903 45 1 1.4313 -8.4327 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230815806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:12 Heat of formation + Delta-G solvation = 22.197479 kcal Electronic energy + Delta-G solvation = -27315.162100 eV Core-core repulsion = 23652.423792 eV Total energy + Delta-G solvation = -3662.738308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64860 -40.80804 -39.90139 -36.35908 -34.67287 -34.50203 -32.89184 -31.71216 -30.08275 -29.15960 -27.84962 -27.20462 -25.73660 -24.67871 -24.17064 -22.60010 -20.77971 -20.34018 -19.49538 -18.06903 -17.90402 -17.43642 -17.23240 -17.04323 -16.96852 -16.86338 -16.23821 -15.77252 -15.63219 -15.01330 -14.88198 -14.72055 -14.39108 -14.29273 -14.15531 -13.94039 -13.81185 -13.45381 -13.36095 -13.15179 -13.04945 -13.02166 -12.75247 -12.51931 -12.47922 -12.30744 -11.88365 -11.75895 -11.60526 -11.17657 -10.73594 -10.67956 -10.49034 -10.45252 -10.00783 -9.74405 -9.30918 -8.97052 -8.52134 -6.21164 0.12789 0.31723 1.00214 1.28291 1.45832 1.55832 1.77803 2.19615 2.23951 2.71080 2.77399 2.86518 3.14103 3.47304 3.59409 3.73434 3.80441 3.83423 3.94344 4.04599 4.09199 4.16593 4.27164 4.35022 4.35189 4.40090 4.43777 4.47876 4.52254 4.64813 4.66538 4.73678 4.84025 4.86334 4.95884 5.00810 5.01377 5.22000 5.28811 5.39792 5.46903 5.70246 5.74026 5.76137 6.10800 6.18461 6.43539 6.93791 6.95814 7.34788 8.60557 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009832 B = 0.004794 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.076400 B = 5839.100368 C = 7874.850707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.136 3.864 4 C 0.017 3.983 5 H 0.102 0.898 6 C -0.121 4.121 7 C 0.000 4.000 8 N -0.480 5.480 9 C 0.077 3.923 10 C -0.129 4.129 11 C -0.070 4.070 12 C -0.179 4.179 13 C 0.090 3.910 14 N -0.504 5.504 15 C 0.100 3.900 16 C 0.534 3.466 17 O -0.535 6.535 18 C -0.107 4.107 19 S -0.166 6.166 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.049 3.951 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.261 1.261 26 H -0.238 1.238 27 H -0.261 1.261 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 24.016 -6.798 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.343 5.343 3 C 0.013 3.987 4 C -0.093 4.093 5 H 0.120 0.880 6 C -0.159 4.159 7 C -0.128 4.128 8 N -0.203 5.203 9 C -0.052 4.052 10 C -0.131 4.131 11 C -0.096 4.096 12 C -0.199 4.199 13 C -0.066 4.066 14 N -0.213 5.213 15 C -0.057 4.057 16 C 0.320 3.680 17 O -0.410 6.410 18 C -0.258 4.258 19 S 0.061 5.939 20 C -0.675 4.675 21 H 0.077 0.923 22 C -0.156 4.156 23 N -0.556 5.556 24 Si 0.732 3.268 25 H -0.186 1.186 26 H -0.162 1.162 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.196 0.804 42 H 0.191 0.809 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.351 23.662 -7.223 24.851 hybrid contribution -1.844 -1.232 0.476 2.269 sum 0.506 22.429 -6.748 23.428 Atomic orbital electron populations 1.22030 0.77720 1.04256 1.03032 1.47664 1.07755 1.04887 1.74042 1.21529 0.97450 0.84286 0.95441 1.24011 0.97560 0.92116 0.95629 0.87993 1.23221 0.96307 0.99044 0.97329 1.23910 0.99416 0.91877 0.97616 1.68830 1.15716 1.20455 1.15249 1.21386 0.93899 0.97493 0.92394 1.20830 1.00634 0.94569 0.97089 1.21686 0.95193 0.94666 0.98090 1.22368 0.99339 1.02248 0.95912 1.23084 0.96936 0.90749 0.95855 1.67706 1.13708 1.08087 1.31768 1.22903 0.93035 1.00273 0.89534 1.19713 0.87342 0.84826 0.76104 1.90703 1.14778 1.86937 1.48630 1.23296 1.01774 0.94784 1.05931 1.84695 1.13357 0.98451 1.97425 1.22477 0.94360 0.92691 1.57961 0.92330 1.25493 1.02381 0.94763 0.92955 1.70021 1.36691 0.99511 1.49380 0.85929 0.80583 0.80004 0.80255 1.18574 1.16239 1.18494 0.91450 0.88043 0.91802 0.86676 0.91955 0.88027 0.90182 0.89510 0.91639 0.91807 0.90990 0.86778 0.84311 0.80382 0.80929 0.88268 0.88165 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.24 127.77 1.31 2.43 16 2 N -0.61 -14.06 2.83 -846.77 -2.40 -16.46 16 3 C 0.14 2.49 5.59 86.38 0.48 2.97 16 4 C 0.02 0.27 3.58 45.02 0.16 0.43 16 5 H 0.10 1.12 7.79 -2.39 -0.02 1.11 16 6 C -0.12 -1.67 7.84 31.24 0.25 -1.42 16 7 C 0.00 0.01 6.98 86.36 0.60 0.61 16 8 N -0.48 -11.06 4.97 -885.24 -4.40 -15.45 16 9 C 0.08 1.74 5.00 85.56 0.43 2.17 16 10 C -0.13 -3.47 5.13 -19.77 -0.10 -3.57 16 11 C -0.07 -2.27 9.86 22.47 0.22 -2.05 16 12 C -0.18 -5.28 10.11 22.36 0.23 -5.05 16 13 C 0.09 2.34 11.18 84.69 0.95 3.29 16 14 N -0.50 -13.57 10.36 -195.84 -2.03 -15.60 16 15 C 0.10 2.41 10.17 84.67 0.86 3.27 16 16 C 0.53 18.28 7.00 87.66 0.61 18.89 16 17 O -0.53 -22.56 14.88 -3.04 -0.05 -22.60 16 18 C -0.11 -4.09 4.71 71.24 0.34 -3.76 16 19 S -0.17 -8.36 18.54 -56.49 -1.05 -9.41 16 20 C -0.53 -30.68 10.04 67.96 0.68 -29.99 16 21 H 0.06 3.62 8.03 -2.91 -0.02 3.59 16 22 C 0.05 2.90 5.50 84.86 0.47 3.37 16 23 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 24 Si 0.91 45.21 27.74 68.60 1.90 47.11 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.24 -11.90 6.73 99.48 0.67 -11.23 16 27 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.06 1.14 6.44 -2.38 -0.02 1.12 16 31 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.06 1.53 7.15 -2.39 -0.02 1.51 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 1.34 7.92 -2.39 -0.02 1.32 16 35 H 0.09 1.14 7.15 -2.38 -0.02 1.13 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.68 7.86 -2.39 -0.02 1.66 16 38 H 0.07 1.20 7.64 -2.39 -0.02 1.18 16 39 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 41 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.17 3.02 7.49 -2.91 -0.02 3.00 16 43 H 0.10 3.59 7.40 -2.39 -0.02 3.57 16 44 H 0.10 3.66 8.11 -2.39 -0.02 3.64 16 45 H 0.28 15.61 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -77.31 383.22 0.71 -76.60 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.94 Total: 19.94 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 7.48 Total: -8.42 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -8.52 Total: -103.21 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.05 Total: -9.41 kcal Total: -77.31 0.71 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230815806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.796 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds