Wall clock time and date at job start Tue Mar 31 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99751 * 2 1 4 4 C 1.50696 * 109.47298 * 270.00162 * 3 2 1 5 5 H 1.08001 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00244 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00126 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99981 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47114 * 89.99485 * 8 6 4 10 10 H 1.48499 * 109.47169 * 209.99568 * 8 6 4 11 11 H 1.48504 * 109.46950 * 329.99926 * 8 6 4 12 12 C 1.34776 * 120.00546 * 180.02562 * 2 1 3 13 13 S 1.71199 * 120.00134 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99545 * 359.97438 * 12 2 1 15 15 C 1.40148 * 119.99796 * 184.12871 * 14 12 2 16 16 C 1.38855 * 119.99504 * 134.79154 * 15 14 12 17 17 C 1.38063 * 120.00162 * 180.02562 * 16 15 14 18 18 C 1.38879 * 119.99769 * 359.97438 * 17 16 15 19 19 N 1.39925 * 120.00083 * 179.97438 * 18 17 16 20 20 C 1.47015 * 110.99913 * 179.97438 * 19 18 17 21 21 C 1.53095 * 109.26291 * 177.60734 * 20 19 18 22 22 O 1.43012 * 109.25379 * 56.84908 * 21 20 19 23 23 C 1.43015 * 113.74253 * 301.33218 * 22 21 20 24 24 C 1.47011 * 110.99909 * 56.36586 * 19 18 17 25 25 C 1.38879 * 119.99391 * 0.27447 * 18 17 16 26 26 C 1.38067 * 119.99473 * 359.44511 * 25 18 17 27 27 H 1.09006 * 109.47246 * 269.99734 * 1 2 3 28 28 H 1.08999 * 109.47604 * 29.99653 * 1 2 3 29 29 H 1.08997 * 109.47209 * 150.00240 * 1 2 3 30 30 H 1.09010 * 109.47117 * 30.00285 * 3 2 1 31 31 H 1.08996 * 109.47198 * 149.99738 * 3 2 1 32 32 H 0.97001 * 119.99779 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00093 * 4.12741 * 14 12 2 34 34 H 1.08001 * 119.99656 * 0.02562 * 16 15 14 35 35 H 1.08007 * 120.00101 * 179.97438 * 17 16 15 36 36 H 1.09009 * 109.50827 * 57.67428 * 20 19 18 37 37 H 1.09003 * 109.51125 * 297.54794 * 20 19 18 38 38 H 1.08991 * 109.51043 * 176.78237 * 21 20 19 39 39 H 1.08996 * 109.50906 * 296.87640 * 21 20 19 40 40 H 1.09000 * 109.51000 * 178.60955 * 23 22 21 41 41 H 1.09001 * 109.50390 * 298.73500 * 23 22 21 42 42 H 1.09000 * 109.50718 * 62.45986 * 24 19 18 43 43 H 1.08999 * 109.51016 * 302.32533 * 24 19 18 44 44 H 1.07998 * 120.00329 * 179.69821 * 25 18 17 45 45 H 1.08000 * 120.00294 * 180.27256 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.3454 3.2575 -2.9126 8 14 3.7327 3.9294 -0.2529 9 1 5.1063 3.5083 0.1230 10 1 3.7475 5.3561 -0.6644 11 1 2.8268 3.7593 0.9115 12 6 2.1389 -1.1671 -0.0005 13 16 3.8509 -1.1670 -0.0012 14 7 1.4651 -2.3343 -0.0005 15 6 2.1632 -3.5465 0.0863 16 6 1.7233 -4.5405 0.9503 17 6 2.4112 -5.7345 1.0363 18 6 3.5429 -5.9414 0.2584 19 7 4.2405 -7.1512 0.3459 20 6 5.3991 -7.1580 -0.5590 21 6 6.1658 -8.4720 -0.3880 22 8 5.2816 -9.5691 -0.6324 23 6 4.1423 -9.5940 0.2316 24 6 3.3552 -8.2912 0.0665 25 6 3.9857 -4.9451 -0.6019 26 6 3.2942 -3.7535 -0.6920 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0285 0.5139 31 1 3.1498 1.1385 0.5138 32 1 3.8222 4.0835 -3.0898 33 1 0.4970 -2.3354 -0.0606 34 1 0.8430 -4.3797 1.5550 35 1 2.0693 -6.5075 1.7087 36 1 6.0540 -6.3205 -0.3180 37 1 5.0565 -7.0679 -1.5898 38 1 6.9926 -8.5060 -1.0973 39 1 6.5550 -8.5368 0.6280 40 1 3.5057 -10.4394 -0.0295 41 1 4.4720 -9.6918 1.2660 42 1 2.9803 -8.2191 -0.9545 43 1 2.5177 -8.2813 0.7640 44 1 4.8685 -5.1040 -1.2033 45 1 3.6360 -2.9803 -1.3642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247181993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:45 Heat of formation + Delta-G solvation = 38.420606 kcal Electronic energy + Delta-G solvation = -26157.028732 eV Core-core repulsion = 22494.993911 eV Total energy + Delta-G solvation = -3662.034821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.69234 -39.57473 -38.23551 -36.32836 -34.30856 -32.53339 -31.96671 -30.65424 -29.61616 -28.73829 -27.48995 -26.07154 -24.86130 -23.34739 -22.46330 -21.73420 -20.82003 -20.51256 -18.26227 -17.76979 -17.36595 -17.07372 -16.46480 -15.78352 -15.58592 -15.45614 -15.17379 -15.05271 -14.76997 -14.36187 -14.05732 -13.95305 -13.67580 -13.48528 -12.99145 -12.59420 -12.55858 -12.32653 -12.28276 -12.05609 -11.92164 -11.75718 -11.70377 -11.20096 -10.96675 -10.85999 -10.62348 -10.46005 -10.33903 -10.15085 -9.70221 -9.52634 -8.89227 -8.71792 -8.61077 -7.66283 -7.02743 -6.35415 -6.13046 -4.12940 1.20138 1.55472 2.05789 2.51090 3.14561 3.28759 3.33291 3.34623 3.39372 3.53850 3.65153 3.90024 4.36768 4.49055 4.60485 4.70176 4.80172 4.93215 4.96543 5.00015 5.05017 5.19188 5.19350 5.28153 5.34503 5.40414 5.41513 5.46661 5.53908 5.59412 5.63422 5.69895 5.91266 6.07207 6.20814 6.24585 6.52006 6.62331 6.73187 6.75383 6.78764 6.86168 7.07429 7.18342 7.39905 7.47021 7.70738 8.37974 8.85695 9.44498 10.99911 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002526 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.930382 B =11082.494361 C =11832.661997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.536 5.536 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.074 0.926 6 C 0.080 3.920 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.555 3.445 13 S -0.629 6.629 14 N -0.649 5.649 15 C 0.116 3.884 16 C -0.104 4.104 17 C -0.139 4.139 18 C 0.104 3.896 19 N -0.487 5.487 20 C 0.012 3.988 21 C 0.063 3.937 22 O -0.386 6.386 23 C 0.062 3.938 24 C 0.020 3.980 25 C -0.162 4.162 26 C -0.038 4.038 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.128 0.872 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 -22.854 7.565 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.239 5.239 3 C 0.087 3.913 4 C -0.562 4.562 5 H 0.092 0.908 6 C -0.123 4.123 7 N -0.531 5.531 8 Si 0.701 3.299 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.197 3.803 13 S -0.494 6.494 14 N -0.279 5.279 15 C 0.021 3.979 16 C -0.126 4.126 17 C -0.161 4.161 18 C 0.007 3.993 19 N -0.203 5.203 20 C -0.116 4.116 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.015 4.015 24 C -0.106 4.106 25 C -0.185 4.185 26 C -0.062 4.062 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.146 0.854 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.019 -22.726 7.810 24.365 hybrid contribution -1.382 1.163 0.124 1.811 sum -5.402 -21.563 7.934 23.603 Atomic orbital electron populations 1.22020 0.80416 1.04087 1.01932 1.47358 1.06211 1.05982 1.64374 1.20352 0.93802 0.76916 1.00199 1.20975 1.37927 1.07254 0.90051 0.90800 1.24725 0.94816 0.97200 0.95569 1.69874 1.41031 1.23535 1.18651 0.86875 0.80667 0.79637 0.82674 1.19360 1.21129 1.19248 1.22255 0.95559 0.81180 0.81281 1.93111 0.89678 1.92746 1.73898 1.42277 1.09163 1.02872 1.73635 1.17339 0.96690 0.84723 0.99104 1.20690 1.01012 0.93694 0.97214 1.20310 0.96357 0.97918 1.01524 1.18895 0.93728 0.90789 0.95930 1.59434 1.08448 1.01697 1.50756 1.22991 0.93226 0.99905 0.95454 1.22727 0.92134 0.84532 1.02039 1.87995 1.35432 1.47881 1.59102 1.22708 0.87489 0.96513 0.94772 1.22927 0.95901 0.90298 1.01456 1.21104 1.02574 0.94192 1.00626 1.21565 0.92427 0.95351 0.96894 0.91852 0.88556 0.92014 0.94519 0.91175 0.92410 0.76144 0.86043 0.85869 0.88477 0.92504 0.87991 0.92078 0.88183 0.92111 0.92952 0.89013 0.85433 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 10.24 59.84 0.61 1.43 16 2 N -0.54 -10.19 2.86 -185.00 -0.53 -10.71 16 3 C 0.21 4.79 3.99 -5.19 -0.02 4.77 16 4 C -0.52 -14.37 9.94 -34.44 -0.34 -14.71 16 5 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 8 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 9 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 C 0.55 10.74 7.56 -86.92 -0.66 10.08 16 13 S -0.63 -14.86 24.22 -107.50 -2.60 -17.46 16 14 N -0.65 -9.64 5.20 -11.35 -0.06 -9.70 16 15 C 0.12 1.70 5.94 -83.60 -0.50 1.20 16 16 C -0.10 -1.25 9.96 -39.42 -0.39 -1.64 16 17 C -0.14 -1.58 9.20 -39.41 -0.36 -1.94 16 18 C 0.10 1.27 5.64 -83.69 -0.47 0.79 16 19 N -0.49 -5.10 4.78 -170.74 -0.82 -5.92 16 20 C 0.01 0.11 4.33 -3.71 -0.02 0.09 16 21 C 0.06 0.52 7.01 37.21 0.26 0.78 16 22 O -0.39 -3.72 10.83 -35.23 -0.38 -4.10 16 23 C 0.06 0.47 7.01 37.21 0.26 0.73 16 24 C 0.02 0.17 5.41 -3.71 -0.02 0.15 16 25 C -0.16 -2.23 8.81 -39.41 -0.35 -2.58 16 26 C -0.04 -0.61 7.86 -39.42 -0.31 -0.92 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.06 0.64 6.31 -51.93 -0.33 0.32 16 30 H 0.04 0.80 7.13 -51.92 -0.37 0.43 16 31 H 0.07 1.77 6.01 -51.93 -0.31 1.46 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.40 4.52 6.52 -40.82 -0.27 4.25 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.13 7.20 -52.48 -0.38 0.75 16 36 H 0.10 0.93 7.21 -51.92 -0.37 0.56 16 37 H 0.06 0.56 7.55 -51.93 -0.39 0.16 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.65 6.86 -51.93 -0.36 0.29 16 44 H 0.13 1.59 5.81 -52.49 -0.30 1.29 16 45 H 0.15 2.90 6.08 -44.06 -0.27 2.63 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -35.01 366.46 -11.48 -46.49 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.32 Total: 5.19 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.40 Total: 0.40 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.63 Total: -52.60 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.38 Total: -4.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: -14.86 SS G_CDS: -2.60 Total: -17.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.01 -11.48 -46.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247181993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.909 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds