Wall clock time and date at job start Tue Mar 31 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99751 * 2 1 4 4 C 1.50696 * 109.47298 * 270.00162 * 3 2 1 5 5 H 1.08001 * 119.99908 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00244 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00126 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99981 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47114 * 89.99485 * 8 6 4 10 10 H 1.48499 * 109.47169 * 209.99568 * 8 6 4 11 11 H 1.48504 * 109.46950 * 329.99926 * 8 6 4 12 12 C 1.34776 * 120.00546 * 180.02562 * 2 1 3 13 13 S 1.71199 * 120.00134 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99545 * 359.97438 * 12 2 1 15 15 C 1.40148 * 119.99796 * 184.12871 * 14 12 2 16 16 C 1.38855 * 119.99504 * 134.79154 * 15 14 12 17 17 C 1.38063 * 120.00162 * 180.02562 * 16 15 14 18 18 C 1.38879 * 119.99769 * 359.97438 * 17 16 15 19 19 N 1.39925 * 120.00083 * 179.97438 * 18 17 16 20 20 C 1.47015 * 110.99913 * 179.97438 * 19 18 17 21 21 C 1.53095 * 109.26291 * 177.60734 * 20 19 18 22 22 O 1.43012 * 109.25379 * 56.84908 * 21 20 19 23 23 C 1.43015 * 113.74253 * 301.33218 * 22 21 20 24 24 C 1.47011 * 110.99909 * 56.36586 * 19 18 17 25 25 C 1.38879 * 119.99391 * 0.27447 * 18 17 16 26 26 C 1.38067 * 119.99473 * 359.44511 * 25 18 17 27 27 H 1.09006 * 109.47246 * 269.99734 * 1 2 3 28 28 H 1.08999 * 109.47604 * 29.99653 * 1 2 3 29 29 H 1.08997 * 109.47209 * 150.00240 * 1 2 3 30 30 H 1.09010 * 109.47117 * 30.00285 * 3 2 1 31 31 H 1.08996 * 109.47198 * 149.99738 * 3 2 1 32 32 H 0.97001 * 119.99779 * 180.02562 * 7 6 4 33 33 H 0.96996 * 120.00093 * 4.12741 * 14 12 2 34 34 H 1.08001 * 119.99656 * 0.02562 * 16 15 14 35 35 H 1.08007 * 120.00101 * 179.97438 * 17 16 15 36 36 H 1.09009 * 109.50827 * 57.67428 * 20 19 18 37 37 H 1.09003 * 109.51125 * 297.54794 * 20 19 18 38 38 H 1.08991 * 109.51043 * 176.78237 * 21 20 19 39 39 H 1.08996 * 109.50906 * 296.87640 * 21 20 19 40 40 H 1.09000 * 109.51000 * 178.60955 * 23 22 21 41 41 H 1.09001 * 109.50390 * 298.73500 * 23 22 21 42 42 H 1.09000 * 109.50718 * 62.45986 * 24 19 18 43 43 H 1.08999 * 109.51016 * 302.32533 * 24 19 18 44 44 H 1.07998 * 120.00329 * 179.69821 * 25 18 17 45 45 H 1.08000 * 120.00294 * 180.27256 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.3454 3.2575 -2.9126 8 14 3.7327 3.9294 -0.2529 9 1 5.1063 3.5083 0.1230 10 1 3.7475 5.3561 -0.6644 11 1 2.8268 3.7593 0.9115 12 6 2.1389 -1.1671 -0.0005 13 16 3.8509 -1.1670 -0.0012 14 7 1.4651 -2.3343 -0.0005 15 6 2.1632 -3.5465 0.0863 16 6 1.7233 -4.5405 0.9503 17 6 2.4112 -5.7345 1.0363 18 6 3.5429 -5.9414 0.2584 19 7 4.2405 -7.1512 0.3459 20 6 5.3991 -7.1580 -0.5590 21 6 6.1658 -8.4720 -0.3880 22 8 5.2816 -9.5691 -0.6324 23 6 4.1423 -9.5940 0.2316 24 6 3.3552 -8.2912 0.0665 25 6 3.9857 -4.9451 -0.6019 26 6 3.2942 -3.7535 -0.6920 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0285 0.5139 31 1 3.1498 1.1385 0.5138 32 1 3.8222 4.0835 -3.0898 33 1 0.4970 -2.3354 -0.0606 34 1 0.8430 -4.3797 1.5550 35 1 2.0693 -6.5075 1.7087 36 1 6.0540 -6.3205 -0.3180 37 1 5.0565 -7.0679 -1.5898 38 1 6.9926 -8.5060 -1.0973 39 1 6.5550 -8.5368 0.6280 40 1 3.5057 -10.4394 -0.0295 41 1 4.4720 -9.6918 1.2660 42 1 2.9803 -8.2191 -0.9545 43 1 2.5177 -8.2813 0.7640 44 1 4.8685 -5.1040 -1.2033 45 1 3.6360 -2.9803 -1.3642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247181993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:45 Heat of formation + Delta-G solvation = 14.424205 kcal Electronic energy + Delta-G solvation = -26158.069294 eV Core-core repulsion = 22494.993911 eV Total energy + Delta-G solvation = -3663.075383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63327 -40.72905 -39.33714 -37.41671 -35.53907 -34.52699 -32.74853 -31.57337 -30.96197 -30.12188 -28.75639 -27.13165 -25.67547 -24.97744 -23.50608 -22.91072 -22.15885 -21.36826 -19.48309 -19.18166 -19.02375 -18.39571 -17.19866 -17.04251 -16.68025 -16.41130 -16.28537 -16.02825 -15.89006 -15.71251 -15.38566 -14.98290 -14.89930 -14.51436 -14.45942 -14.05997 -13.83972 -13.49297 -13.30953 -13.25047 -13.07155 -12.91985 -12.65364 -12.52918 -12.38760 -12.18166 -12.09770 -11.85624 -11.73916 -11.61764 -11.05554 -10.81066 -10.52588 -10.01914 -9.92502 -8.86711 -8.69091 -8.32070 -8.05514 -6.36020 0.00024 0.51180 0.69061 0.99932 1.33080 1.42299 1.44874 1.65167 2.32547 2.36332 2.52793 2.86156 2.93796 3.04820 3.81281 3.83807 3.95805 3.96327 4.01775 4.13664 4.21027 4.28589 4.34847 4.39975 4.42684 4.53618 4.56741 4.61048 4.69413 4.69789 4.77029 4.77834 4.87964 4.94530 5.00469 5.13890 5.24970 5.33728 5.35686 5.42025 5.64691 5.72033 5.86229 5.94319 6.14237 6.20456 6.25115 6.42567 6.62029 7.25067 8.84848 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002526 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.930382 B =11082.494361 C =11832.661997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.540 5.540 3 C 0.218 3.782 4 C -0.518 4.518 5 H 0.028 0.972 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.942 3.058 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.233 1.233 12 C 0.574 3.426 13 S -0.733 6.733 14 N -0.619 5.619 15 C 0.087 3.913 16 C -0.087 4.087 17 C -0.134 4.134 18 C 0.110 3.890 19 N -0.490 5.490 20 C 0.010 3.990 21 C 0.066 3.934 22 O -0.403 6.403 23 C 0.060 3.940 24 C 0.020 3.980 25 C -0.175 4.175 26 C -0.059 4.059 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.421 0.579 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 -24.882 10.624 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.243 5.243 3 C 0.096 3.904 4 C -0.557 4.557 5 H 0.047 0.953 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.765 3.235 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.156 1.156 12 C 0.211 3.789 13 S -0.601 6.601 14 N -0.249 5.249 15 C -0.006 4.006 16 C -0.108 4.108 17 C -0.155 4.155 18 C 0.012 3.988 19 N -0.206 5.206 20 C -0.117 4.117 21 C -0.011 4.011 22 O -0.322 6.322 23 C -0.016 4.016 24 C -0.106 4.106 25 C -0.198 4.198 26 C -0.082 4.082 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.265 0.735 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.131 0.869 44 H 0.144 0.856 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.769 -24.837 10.880 27.947 hybrid contribution -0.636 1.559 -0.894 1.907 sum -7.405 -23.277 9.986 26.389 Atomic orbital electron populations 1.22439 0.76382 1.05461 1.04866 1.47281 1.08509 1.04505 1.63965 1.19972 0.94192 0.79242 0.97030 1.21143 1.36941 1.06320 0.91279 0.95350 1.25659 0.95120 0.98940 0.98244 1.70028 1.42725 1.24479 1.21227 0.85809 0.79775 0.77704 0.80218 1.20730 1.20332 1.15612 1.21675 0.93740 0.82611 0.80857 1.93306 0.94853 1.93869 1.78068 1.42070 1.10048 1.01573 1.71232 1.17548 0.97109 0.85225 1.00746 1.20998 1.01506 0.92437 0.95817 1.20712 0.95362 0.98401 1.01057 1.19090 0.93811 0.90972 0.94938 1.59492 1.08794 1.01632 1.50690 1.23005 0.93156 1.00618 0.94931 1.22769 0.92132 0.83426 1.02769 1.87978 1.36198 1.48111 1.59912 1.22891 0.87094 0.96723 0.94913 1.23052 0.96232 0.89682 1.01602 1.21128 1.02725 0.94308 1.01607 1.21285 0.93975 0.95439 0.97524 0.87910 0.88958 0.89092 0.91787 0.93132 0.92354 0.73546 0.82485 0.82549 0.89209 0.93231 0.86641 0.91620 0.85961 0.91447 0.93709 0.86942 0.85569 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.20 10.24 127.77 1.31 2.51 16 2 N -0.54 -19.89 2.86 -739.20 -2.11 -22.00 16 3 C 0.22 9.95 3.99 85.63 0.34 10.29 16 4 C -0.52 -29.27 9.94 25.60 0.25 -29.01 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.02 1.09 5.47 84.65 0.46 1.55 16 7 N -0.94 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 9 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 12 C 0.57 22.13 7.56 179.05 1.35 23.48 16 13 S -0.73 -36.50 24.22 -56.49 -1.37 -37.86 16 14 N -0.62 -17.39 5.20 -189.83 -0.99 -18.37 16 15 C 0.09 2.48 5.94 38.11 0.23 2.70 16 16 C -0.09 -1.77 9.96 22.38 0.22 -1.55 16 17 C -0.13 -2.57 9.20 22.38 0.21 -2.37 16 18 C 0.11 2.52 5.64 38.16 0.22 2.74 16 19 N -0.49 -9.43 4.78 -694.10 -3.32 -12.75 16 20 C 0.01 0.19 4.33 86.31 0.37 0.57 16 21 C 0.07 1.02 7.01 72.01 0.50 1.52 16 22 O -0.40 -7.07 10.83 -148.98 -1.61 -8.68 16 23 C 0.06 0.74 7.01 72.02 0.50 1.25 16 24 C 0.02 0.28 5.41 86.32 0.47 0.74 16 25 C -0.18 -4.98 8.81 22.38 0.20 -4.78 16 26 C -0.06 -1.97 7.86 22.38 0.18 -1.79 16 27 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.09 1.54 6.31 -2.39 -0.02 1.53 16 30 H 0.06 2.61 7.13 -2.38 -0.02 2.60 16 31 H 0.05 2.56 6.01 -2.39 -0.01 2.55 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.42 8.07 6.52 -92.71 -0.60 7.47 16 34 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.16 2.01 7.20 -2.91 -0.02 1.99 16 36 H 0.09 1.79 7.21 -2.38 -0.02 1.77 16 37 H 0.05 1.00 7.55 -2.39 -0.02 0.98 16 38 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 1.11 6.86 -2.39 -0.02 1.09 16 44 H 0.13 3.45 5.81 -2.91 -0.02 3.43 16 45 H 0.11 4.70 6.08 -8.27 -0.05 4.65 16 Total: -1.00 -83.13 366.46 -0.08 -83.20 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.32 Total: 21.69 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 6.81 Total: 7.85 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -6.12 Total: -112.27 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -1.61 Total: -8.68 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 16 Polarization: -36.50 SS G_CDS: -1.37 Total: -37.86 kcal Total: -83.13 -0.08 -83.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247181993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.629 kcal (2) G-P(sol) polarization free energy of solvation -83.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds