Wall clock time and date at job start Tue Mar 31 2020 18:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00312 * 2 1 4 4 C 1.34778 * 119.99543 * 180.02562 * 2 1 3 5 5 O 1.21507 * 120.00432 * 0.02562 * 4 2 1 6 6 O 1.34634 * 119.99640 * 180.02562 * 4 2 1 7 7 C 1.45197 * 117.00047 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47246 * 179.97438 * 7 6 4 9 9 O 1.45201 * 109.46637 * 65.00383 * 8 7 6 10 10 C 1.34234 * 116.99588 * 179.97438 * 9 8 7 11 11 O 1.20824 * 119.99958 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99948 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07996 * 119.99568 * 330.07534 * 15 13 12 17 17 C 1.37877 * 119.99831 * 150.08226 * 15 13 12 18 18 N 1.31508 * 120.00174 * 6.54999 * 17 15 13 19 19 Si 1.86806 * 119.99365 * 186.55534 * 17 15 13 20 20 H 1.48503 * 109.46588 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.46990 * 299.99410 * 19 17 15 22 22 H 1.48496 * 109.47189 * 59.99915 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38238 * 119.99714 * 64.29653 * 23 13 12 25 25 C 1.38234 * 119.99537 * 179.80946 * 24 23 13 26 26 C 1.38238 * 120.00115 * 0.39931 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.86107 * 26 25 24 28 28 C 1.38229 * 119.99861 * 359.94762 * 27 26 25 29 29 H 1.08996 * 109.47478 * 270.00341 * 1 2 3 30 30 H 1.09007 * 109.46754 * 29.99689 * 1 2 3 31 31 H 1.08995 * 109.47607 * 149.99613 * 1 2 3 32 32 H 1.08997 * 109.47084 * 270.00448 * 3 2 1 33 33 H 1.09001 * 109.47048 * 29.99996 * 3 2 1 34 34 H 1.08996 * 109.47226 * 149.99574 * 3 2 1 35 35 H 1.09005 * 109.47404 * 59.99790 * 7 6 4 36 36 H 1.09003 * 109.47094 * 300.00140 * 7 6 4 37 37 H 1.08997 * 109.47399 * 304.99826 * 8 7 6 38 38 H 1.09002 * 109.47136 * 184.99745 * 8 7 6 39 39 H 1.08999 * 109.46642 * 59.99918 * 12 10 9 40 40 H 1.09002 * 109.46876 * 299.99811 * 12 10 9 41 41 H 0.96995 * 120.00004 * 354.73307 * 18 17 15 42 42 H 1.08000 * 120.00129 * 0.02562 * 24 23 13 43 43 H 1.08004 * 120.00058 * 180.23627 * 25 24 23 44 44 H 1.08006 * 119.99774 * 179.82823 * 26 25 24 45 45 H 1.07995 * 119.99599 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5313 -2.2195 -0.0015 6 8 3.4852 -1.1673 0.0000 7 6 4.1443 -2.4610 0.0000 8 6 5.6612 -2.2606 0.0000 9 8 6.0651 -1.6237 1.2407 10 6 7.3747 -1.3762 1.4004 11 8 8.1575 -1.6820 0.5323 12 6 7.8686 -0.7169 2.6624 13 6 9.3879 -0.5516 2.5904 14 1 9.6528 -0.0218 1.6754 15 6 10.0416 -1.9094 2.5918 16 1 9.5673 -2.7365 3.0990 17 6 11.2453 -2.0957 1.9456 18 7 11.8862 -1.0650 1.4393 19 14 11.9655 -3.8123 1.7893 20 1 13.2557 -3.7428 1.0573 21 1 12.1936 -4.3785 3.1430 22 1 11.0194 -4.6799 1.0427 23 6 9.8645 0.2366 3.7832 24 6 9.7202 -0.2817 5.0565 25 6 10.1610 0.4396 6.1503 26 6 10.7385 1.6827 5.9714 27 6 10.8778 2.2033 4.6984 28 6 10.4407 1.4803 3.6044 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 2.3792 1.5833 -1.0276 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5139 35 1 3.8518 -3.0179 -0.8903 36 1 3.8511 -3.0182 0.8897 37 1 5.9442 -1.6287 -0.8418 38 1 6.1555 -3.2279 -0.0896 39 1 7.6112 -1.3371 3.5209 40 1 7.4008 0.2620 2.7679 41 1 11.4775 -0.1855 1.4526 42 1 9.2664 -1.2517 5.1965 43 1 10.0518 0.0330 7.1449 44 1 11.0803 2.2475 6.8262 45 1 11.3286 3.1747 4.5587 46 1 10.5499 1.8869 2.6098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256400969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:14 Heat of formation + Delta-G solvation = -141.354808 kcal Electronic energy + Delta-G solvation = -28513.113039 eV Core-core repulsion = 24368.236949 eV Total energy + Delta-G solvation = -4144.876090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69155 -39.84774 -38.52790 -37.29774 -36.01049 -35.71978 -34.32689 -31.54542 -30.88035 -30.15406 -29.05009 -28.39924 -26.49270 -25.36653 -23.41201 -22.67270 -21.73865 -21.00705 -20.65764 -19.62591 -18.31074 -17.34068 -17.30319 -16.90485 -16.71977 -16.13103 -15.81608 -15.58700 -14.92544 -14.80385 -14.43008 -14.18340 -13.76808 -13.71414 -13.43995 -13.09671 -12.96353 -12.81672 -12.73721 -12.58750 -12.47693 -12.36830 -12.24721 -11.90610 -11.69987 -11.55250 -11.07700 -10.82483 -10.76411 -10.74781 -10.48706 -10.27465 -10.22197 -10.09878 -9.75696 -9.63646 -9.13340 -8.73447 -8.36966 -8.17956 -7.70519 -6.32232 -4.01722 1.89986 2.14962 2.19068 2.59612 3.01448 3.11318 3.45636 3.50076 3.60620 3.66022 4.54576 4.61100 4.68501 4.78611 4.85101 4.95341 4.99853 5.07188 5.26675 5.32663 5.36197 5.41931 5.47616 5.49670 5.56408 5.58961 5.71799 5.75777 5.92501 5.97102 6.01772 6.10352 6.11890 6.26677 6.34769 6.53525 6.72933 6.84499 6.98025 6.99713 7.09882 7.18406 7.32343 7.63373 7.80301 8.03863 8.11021 8.41029 8.54342 8.88114 9.68405 11.07923 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011567 B = 0.002842 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.139721 B = 9849.770758 C =11565.611302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.606 5.606 3 C 0.082 3.918 4 C 0.648 3.352 5 O -0.575 6.575 6 O -0.358 6.358 7 C 0.091 3.909 8 C 0.066 3.934 9 O -0.368 6.368 10 C 0.458 3.542 11 O -0.470 6.470 12 C -0.089 4.089 13 C 0.069 3.931 14 H 0.053 0.947 15 C -0.577 4.577 16 H 0.048 0.952 17 C 0.034 3.966 18 N -0.902 5.902 19 Si 1.063 2.937 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.288 1.288 23 C -0.032 4.032 24 C -0.107 4.107 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.943 5.388 -0.093 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.347 5.347 3 C -0.061 4.061 4 C 0.403 3.597 5 O -0.465 6.465 6 O -0.272 6.272 7 C 0.017 3.983 8 C -0.008 4.008 9 O -0.287 6.287 10 C 0.300 3.700 11 O -0.353 6.353 12 C -0.127 4.127 13 C 0.050 3.950 14 H 0.071 0.929 15 C -0.615 4.615 16 H 0.066 0.934 17 C -0.172 4.172 18 N -0.537 5.537 19 Si 0.892 3.108 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.033 4.033 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.169 4.169 27 C -0.142 4.142 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.485 4.078 -0.951 17.008 hybrid contribution -1.199 0.689 0.473 1.462 sum -17.684 4.767 -0.478 18.321 Atomic orbital electron populations 1.21665 0.76488 1.03533 1.02314 1.46493 1.06866 1.04470 1.76862 1.21831 0.97738 0.84189 1.02338 1.18060 0.81244 0.84143 0.76268 1.90986 1.69023 1.30405 1.56046 1.86310 1.18518 1.35885 1.86471 1.23122 0.89683 0.81629 1.03893 1.22961 0.91532 0.99556 0.86750 1.86576 1.28872 1.73353 1.39871 1.23952 0.79008 0.77012 0.90064 1.90715 1.55243 1.46667 1.42674 1.21498 0.99510 0.99362 0.92326 1.17942 0.87872 0.96962 0.92247 0.92900 1.21575 1.09455 0.93003 1.37445 0.93389 1.25621 0.94181 1.04495 0.92950 1.70765 1.38006 1.00879 1.44049 0.83633 0.76238 0.74645 0.76303 1.20855 1.21612 1.21473 1.20701 0.94594 0.91930 0.96068 1.20933 1.00367 0.99109 0.92098 1.21020 1.00152 0.95276 0.98244 1.20845 1.02778 0.96714 0.96572 1.20965 1.00750 0.99486 0.93037 1.21055 1.00516 0.94998 0.98104 0.92333 0.90558 0.90206 0.92356 0.90755 0.89870 0.89050 0.89872 0.90358 0.88656 0.89073 0.90369 0.91806 0.86618 0.87349 0.87508 0.87380 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 10.44 59.85 0.62 1.34 16 2 N -0.61 -6.03 3.27 -195.41 -0.64 -6.67 16 3 C 0.08 0.61 10.44 59.85 0.62 1.23 16 4 C 0.65 8.57 8.40 54.06 0.45 9.03 16 5 O -0.58 -8.96 15.71 -19.28 -0.30 -9.26 16 6 O -0.36 -4.76 9.02 -42.75 -0.39 -5.15 16 7 C 0.09 1.11 5.86 37.16 0.22 1.32 16 8 C 0.07 0.92 5.85 37.16 0.22 1.14 16 9 O -0.37 -6.25 10.20 -41.69 -0.43 -6.68 16 10 C 0.46 9.22 7.71 36.01 0.28 9.50 16 11 O -0.47 -11.18 14.77 -18.75 -0.28 -11.45 16 12 C -0.09 -1.73 5.05 -27.88 -0.14 -1.87 16 13 C 0.07 1.60 1.31 -92.92 -0.12 1.47 16 14 H 0.05 1.37 6.23 -51.93 -0.32 1.05 16 15 C -0.58 -15.28 6.41 -34.44 -0.22 -15.51 16 16 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 17 C 0.03 0.95 5.45 -17.82 -0.10 0.85 16 18 N -0.90 -26.85 13.63 55.43 0.76 -26.09 16 19 Si 1.06 25.60 29.91 -169.99 -5.08 20.52 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.03 -0.70 4.77 -104.62 -0.50 -1.20 16 24 C -0.11 -2.14 8.88 -39.58 -0.35 -2.49 16 25 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 26 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.12 -2.22 10.05 -39.59 -0.40 -2.62 16 28 C -0.13 -2.61 9.67 -39.59 -0.38 -3.00 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.08 0.65 7.42 -51.93 -0.39 0.26 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.08 0.73 7.37 -51.93 -0.38 0.34 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 38 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.09 1.67 7.87 -51.93 -0.41 1.26 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.27 7.93 6.68 -40.82 -0.27 7.66 16 42 H 0.12 2.25 7.80 -52.49 -0.41 1.84 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 44 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 46 H 0.11 2.21 7.95 -52.49 -0.42 1.79 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -34.65 394.64 -7.87 -42.52 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.87 Total: 2.73 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.59 Total: -6.41 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.12 Total: -32.77 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.39 Total: -32.54 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.65 -7.87 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256400969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.834 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds