Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 120.00019 * 2 1 4 4 H 1.08001 * 120.00392 * 324.26412 * 3 2 1 5 5 C 1.38808 * 119.99501 * 144.26472 * 3 2 1 6 6 N 1.31625 * 120.00007 * 158.32833 * 5 3 2 7 7 Si 1.86799 * 120.00197 * 338.32634 * 5 3 2 8 8 H 1.48500 * 109.46946 * 95.46329 * 7 5 3 9 9 H 1.48496 * 109.47036 * 215.46189 * 7 5 3 10 10 H 1.48493 * 109.47054 * 335.46518 * 7 5 3 11 11 C 1.46497 * 119.99409 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47561 * 89.99866 * 11 2 1 13 13 H 1.09000 * 110.88355 * 51.11199 * 12 11 2 14 14 C 1.55153 * 111.00421 * 174.99731 * 12 11 2 15 15 C 1.54328 * 102.94119 * 153.57776 * 14 12 11 16 16 N 1.47025 * 107.26830 * 337.80365 * 15 14 12 17 17 C 1.34775 * 125.64522 * 178.96165 * 16 15 14 18 18 O 1.21685 * 119.99963 * 185.14493 * 17 16 15 19 19 C 1.46687 * 120.00082 * 5.14350 * 17 16 15 20 20 C 1.35659 * 126.12853 * 174.44679 * 19 17 16 21 21 N 1.30951 * 114.19025 * 179.78552 * 20 19 17 22 22 C 1.29432 * 117.35921 * 0.52879 * 21 20 19 23 23 C 1.50695 * 124.80126 * 179.68824 * 22 21 20 24 24 C 1.53009 * 117.50135 * 8.64142 * 23 22 21 25 25 C 1.52998 * 117.49846 * 300.02015 * 23 22 21 26 26 S 1.70952 * 110.39313 * 359.70285 * 22 21 20 27 27 C 1.47424 * 108.70562 * 358.94241 * 16 15 14 28 28 H 1.08993 * 109.46973 * 265.82709 * 1 2 3 29 29 H 1.08997 * 109.47294 * 145.81593 * 1 2 3 30 30 H 1.09007 * 109.46997 * 25.82178 * 1 2 3 31 31 H 0.96993 * 120.00284 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46557 * 209.99929 * 11 2 1 33 33 H 1.09000 * 109.47228 * 329.99621 * 11 2 1 34 34 H 1.08998 * 110.71838 * 271.93833 * 14 12 11 35 35 H 1.08996 * 110.72332 * 35.03469 * 14 12 11 36 36 H 1.09000 * 109.88119 * 97.22340 * 15 14 12 37 37 H 1.08998 * 109.87876 * 218.23284 * 15 14 12 38 38 H 1.08002 * 122.90491 * 359.96525 * 20 19 17 39 39 H 1.08996 * 115.54977 * 154.35010 * 23 22 21 40 40 H 1.09002 * 117.49521 * 0.02562 * 24 23 22 41 41 H 1.08997 * 117.49801 * 145.01588 * 24 23 22 42 42 H 1.09004 * 117.49964 * 214.97593 * 25 23 22 43 43 H 1.08997 * 117.49992 * 359.97438 * 25 23 22 44 44 H 1.08995 * 110.36836 * 265.29403 * 27 16 15 45 45 H 1.08999 * 110.36521 * 142.96370 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7623 2.0332 -0.5462 5 6 3.3418 1.2989 0.7021 6 7 4.2064 2.2391 0.3840 7 14 3.7191 0.1169 2.0985 8 1 4.5488 -1.0038 1.5877 9 1 4.4596 0.8339 3.1675 10 1 2.4489 -0.4190 2.6501 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 2.9023 -0.9036 -2.0224 14 6 3.3345 -2.9855 -1.4870 15 6 2.9275 -3.6415 -2.8234 16 7 1.5944 -3.1294 -3.1727 17 6 0.8968 -3.4468 -4.2814 18 8 -0.1598 -2.8904 -4.5154 19 6 1.4113 -4.4628 -5.2059 20 6 0.7676 -4.9525 -6.2950 21 7 1.4472 -5.8526 -6.9603 22 6 2.6176 -6.1691 -6.5073 23 6 3.5367 -7.1854 -7.1345 24 6 3.1427 -7.7447 -8.5031 25 6 3.0242 -8.6219 -7.2552 26 16 2.9730 -5.2715 -5.0965 27 6 1.1469 -2.2116 -2.1094 28 1 -0.3633 -0.0748 1.0249 29 1 -0.3634 -0.8501 -0.5774 30 1 -0.3633 0.9251 -0.4477 31 1 5.0392 2.3183 0.8748 32 1 3.1499 -1.1387 0.5133 33 1 1.6083 -2.0286 0.5130 34 1 4.3924 -2.7228 -1.4929 35 1 3.1062 -3.6414 -0.6470 36 1 3.6430 -3.3738 -3.6008 37 1 2.8927 -4.7249 -2.7090 38 1 -0.2189 -4.6260 -6.5896 39 1 4.5990 -7.0452 -6.9346 40 1 2.2189 -7.3772 -8.9500 41 1 3.9459 -7.9723 -9.2040 42 1 3.7494 -9.4268 -7.1352 43 1 2.0224 -8.8320 -6.8806 44 1 0.5309 -2.7430 -1.3840 45 1 0.5941 -1.3755 -2.5377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267593838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = 71.057989 kcal Electronic energy + Delta-G solvation = -26340.854884 eV Core-core repulsion = 22680.235327 eV Total energy + Delta-G solvation = -3660.619557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45503 -39.76923 -37.78516 -37.11270 -35.63802 -32.30960 -31.43934 -30.56113 -29.11514 -27.30285 -26.51779 -25.36564 -23.52383 -22.84148 -22.70678 -21.27341 -21.00656 -20.13697 -18.74090 -18.47313 -16.94239 -16.93203 -16.45135 -15.97050 -15.67895 -15.35382 -14.80517 -14.69595 -14.50146 -14.24828 -13.89635 -13.51086 -13.24887 -12.98966 -12.73448 -12.61044 -12.50575 -12.37535 -11.95678 -11.88580 -11.76837 -11.56176 -11.27947 -11.17342 -11.06083 -10.92153 -10.80175 -10.37285 -10.33431 -10.18160 -9.92513 -9.76091 -9.67375 -9.52199 -9.13049 -8.61179 -8.56316 -6.90121 -6.02294 -3.42820 -0.00203 0.89605 1.34836 2.20153 2.87529 3.05973 3.22745 3.39427 3.42433 3.46887 3.69658 4.31470 4.35884 4.39199 4.46971 4.52637 4.63082 4.77791 4.93129 4.97282 5.05415 5.15947 5.20582 5.32296 5.34068 5.36525 5.45485 5.56082 5.72545 5.74278 5.85553 5.90267 5.91993 6.02442 6.08487 6.19331 6.28182 6.35670 6.48513 6.65149 6.71520 6.84475 7.32518 7.44663 8.00158 8.01390 8.33572 8.93895 9.67180 10.06662 11.13568 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.002649 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.628734 B =10566.604886 C =11237.367391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.612 5.612 3 C -0.267 4.267 4 H 0.080 0.920 5 C 0.032 3.968 6 N -0.901 5.901 7 Si 0.880 3.120 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.271 1.271 11 C 0.150 3.850 12 C -0.115 4.115 13 H 0.096 0.904 14 C -0.126 4.126 15 C 0.089 3.911 16 N -0.611 5.611 17 C 0.607 3.393 18 O -0.528 6.528 19 C -0.289 4.289 20 C 0.119 3.881 21 N -0.482 5.482 22 C 0.068 3.932 23 C -0.103 4.103 24 C -0.148 4.148 25 C -0.154 4.154 26 S 0.194 5.806 27 C 0.120 3.880 28 H 0.007 0.993 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.188 0.812 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 -22.476 -12.528 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.335 5.335 3 C -0.395 4.395 4 H 0.098 0.902 5 C -0.168 4.168 6 N -0.543 5.543 7 Si 0.711 3.289 8 H -0.213 1.213 9 H -0.230 1.230 10 H -0.196 1.196 11 C 0.023 3.977 12 C -0.137 4.137 13 H 0.114 0.886 14 C -0.165 4.165 15 C -0.035 4.035 16 N -0.344 5.344 17 C 0.394 3.606 18 O -0.406 6.406 19 C -0.413 4.413 20 C -0.039 4.039 21 N -0.196 5.196 22 C -0.206 4.206 23 C -0.125 4.125 24 C -0.187 4.187 25 C -0.193 4.193 26 S 0.453 5.547 27 C -0.001 4.001 28 H 0.026 0.974 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.204 0.796 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.024 -22.281 -12.432 25.535 hybrid contribution -0.386 -0.273 0.545 0.721 sum 0.638 -22.554 -11.888 25.503 Atomic orbital electron populations 1.21148 0.84353 0.99357 0.97524 1.44069 1.00881 1.01904 1.86696 1.18836 1.04386 0.90236 1.26068 0.90217 1.25434 0.96940 0.96600 0.97837 1.69864 1.08508 1.35363 1.40536 0.86906 0.77901 0.80257 0.83876 1.21331 1.23035 1.19557 1.21116 0.96701 0.87992 0.91892 1.23157 0.93372 0.96165 1.00962 0.88559 1.22678 1.01329 0.97593 0.94861 1.22181 0.84222 0.98362 0.98710 1.48449 1.18588 1.46217 1.21127 1.16302 0.83801 0.81121 0.79394 1.90849 1.22633 1.53028 1.74096 1.25777 1.00302 1.09439 1.05795 1.22113 1.00773 0.91495 0.89471 1.66156 1.05889 1.15796 1.31712 1.26695 0.95332 1.00796 0.97743 1.20578 0.96895 0.92640 1.02355 1.23027 1.04188 1.01724 0.89788 1.23059 1.03092 0.91230 1.01894 1.84205 1.15512 1.31618 1.23348 1.22454 0.97729 0.92201 0.87756 0.97438 0.95187 0.93533 0.92714 0.92293 0.93871 0.89564 0.90442 0.90981 0.91177 0.79550 0.85277 0.87269 0.87929 0.87683 0.88235 0.91523 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.39 10.55 59.85 0.63 3.03 16 2 N -0.61 -14.07 2.49 -181.12 -0.45 -14.52 16 3 C -0.27 -7.28 9.92 -15.06 -0.15 -7.43 16 4 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 5 C 0.03 0.90 5.33 -17.43 -0.09 0.80 16 6 N -0.90 -26.90 13.97 55.49 0.78 -26.12 16 7 Si 0.88 21.45 24.91 -169.99 -4.23 17.22 16 8 H -0.28 -6.54 6.68 56.52 0.38 -6.16 16 9 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.15 2.99 4.02 -4.04 -0.02 2.97 16 12 C -0.11 -1.98 3.26 -88.47 -0.29 -2.26 16 13 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 14 C -0.13 -1.66 6.42 -24.90 -0.16 -1.82 16 15 C 0.09 1.08 5.19 -3.06 -0.02 1.06 16 16 N -0.61 -9.15 3.33 -172.06 -0.57 -9.72 16 17 C 0.61 9.65 7.81 -12.85 -0.10 9.55 16 18 O -0.53 -10.04 17.10 5.20 0.09 -9.95 16 19 C -0.29 -3.79 6.40 -37.09 -0.24 -4.02 16 20 C 0.12 1.49 11.10 -18.85 -0.21 1.28 16 21 N -0.48 -5.68 9.98 -11.50 -0.11 -5.80 16 22 C 0.07 0.68 6.96 -13.29 -0.09 0.58 16 23 C -0.10 -0.74 6.28 -91.77 -0.58 -1.31 16 24 C -0.15 -0.94 10.12 -26.73 -0.27 -1.21 16 25 C -0.15 -0.91 10.23 -26.73 -0.27 -1.19 16 26 S 0.19 1.90 18.68 -107.50 -2.01 -0.11 16 27 C 0.12 1.95 5.00 -2.53 -0.01 1.94 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.03 0.52 6.30 -51.93 -0.33 0.19 16 30 H 0.05 0.92 8.01 -51.92 -0.42 0.50 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.29 2.97 -51.93 -0.15 1.14 16 33 H 0.04 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.07 0.81 7.08 -51.93 -0.37 0.44 16 37 H 0.07 0.71 6.84 -51.93 -0.36 0.36 16 38 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.03 7.66 -51.93 -0.40 0.64 16 45 H 0.08 1.57 7.75 -51.93 -0.40 1.16 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -32.50 371.72 -9.40 -41.90 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.62 Total: -0.48 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.86 Total: 1.98 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.36 Total: -56.16 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.23 Total: 17.22 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.01 Total: -0.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.50 -9.40 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267593838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.954 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds