Wall clock time and date at job start Tue Mar 31 2020 18:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00095 * 2 1 4 4 H 1.08008 * 120.00010 * 136.70624 * 3 2 1 5 5 C 1.38813 * 120.00279 * 316.71101 * 3 2 1 6 6 N 1.31621 * 119.99601 * 356.87097 * 5 3 2 7 7 Si 1.86798 * 120.00105 * 176.87618 * 5 3 2 8 8 H 1.48490 * 109.47290 * 59.99660 * 7 5 3 9 9 H 1.48500 * 109.47008 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46996 * 299.99182 * 7 5 3 11 11 C 1.46503 * 120.00242 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46738 * 282.50031 * 11 2 1 13 13 H 1.09005 * 109.99900 * 62.37780 * 12 11 2 14 14 C 1.54316 * 109.77278 * 183.53417 * 12 11 2 15 15 C 1.55161 * 102.86482 * 141.88716 * 14 12 11 16 16 C 1.54913 * 101.57831 * 324.30197 * 15 14 12 17 17 N 1.47020 * 109.88479 * 301.28364 * 12 11 2 18 18 C 1.34778 * 125.65210 * 61.67813 * 17 12 11 19 19 O 1.21692 * 119.99391 * 5.43384 * 18 17 12 20 20 C 1.46682 * 120.00390 * 185.44269 * 18 17 12 21 21 C 1.35663 * 126.12959 * 7.45083 * 20 18 17 22 22 N 1.30939 * 114.18753 * 179.79098 * 21 20 18 23 23 C 1.29428 * 117.36617 * 0.52310 * 22 21 20 24 24 C 1.50697 * 124.80807 * 179.73147 * 23 22 21 25 25 C 1.53006 * 117.49468 * 8.72325 * 24 23 22 26 26 C 1.53003 * 117.49917 * 300.06600 * 24 23 22 27 27 S 1.70951 * 110.38942 * 359.71122 * 23 22 21 28 28 H 1.08991 * 109.47446 * 276.91311 * 1 2 3 29 29 H 1.09005 * 109.47302 * 36.91738 * 1 2 3 30 30 H 1.09005 * 109.47282 * 156.91064 * 1 2 3 31 31 H 0.97001 * 119.99956 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47346 * 162.50324 * 11 2 1 33 33 H 1.08996 * 109.47186 * 42.49839 * 11 2 1 34 34 H 1.08991 * 110.92798 * 23.46946 * 14 12 11 35 35 H 1.08998 * 110.59065 * 260.14210 * 14 12 11 36 36 H 1.08994 * 111.00295 * 206.23199 * 15 14 12 37 37 H 1.08997 * 111.00521 * 82.37232 * 15 14 12 38 38 H 1.08996 * 110.36860 * 278.17306 * 16 15 14 39 39 H 1.08999 * 110.46086 * 155.89440 * 16 15 14 40 40 H 1.07995 * 122.90198 * 0.02562 * 21 20 18 41 41 H 1.08994 * 115.55614 * 154.39151 * 24 23 22 42 42 H 1.09002 * 117.50307 * 0.02562 * 25 24 23 43 43 H 1.09002 * 117.49828 * 145.02226 * 25 24 23 44 44 H 1.08995 * 117.50009 * 214.97529 * 26 24 23 45 45 H 1.08999 * 117.49754 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0093 1.3132 0.6414 5 6 1.7389 2.2246 -0.8243 6 7 0.7295 2.0491 -1.6506 7 14 2.6188 3.8711 -0.7609 8 1 4.0498 3.6813 -1.1089 9 1 1.9932 4.8043 -1.7320 10 1 2.5130 4.4365 0.6082 11 6 2.1975 -1.2687 -0.0006 12 6 2.1821 -1.8671 1.4075 13 1 1.1574 -2.0853 1.7087 14 6 3.0264 -3.1585 1.4352 15 6 3.7257 -3.0844 2.8183 16 6 3.9794 -1.5625 2.9574 17 7 2.7927 -0.9258 2.3576 18 6 2.3394 0.3121 2.6380 19 8 1.2889 0.6981 2.1602 20 6 3.1123 1.1942 3.5191 21 6 4.3564 0.9512 4.0026 22 7 4.8298 1.9025 4.7678 23 6 4.0719 2.9307 4.9764 24 6 4.4447 4.1149 5.8307 25 6 5.8879 4.1980 6.3318 26 6 4.7582 3.8517 7.3050 27 16 2.5884 2.7556 4.1453 28 1 -0.3634 0.1237 1.0201 29 1 -0.3634 0.8216 -0.6173 30 1 -0.3634 -0.9454 -0.4030 31 1 0.4427 2.7747 -2.2268 32 1 3.2280 -1.0932 -0.3095 33 1 1.7230 -1.9619 -0.6951 34 1 3.7618 -3.1601 0.6309 35 1 2.3846 -4.0374 1.3743 36 1 4.6646 -3.6379 2.8115 37 1 3.0673 -3.4445 3.6088 38 1 4.8793 -1.2766 2.4128 39 1 4.0684 -1.2854 4.0078 40 1 4.9099 0.0527 3.7731 41 1 3.9437 5.0504 5.5820 42 1 6.5679 3.3964 6.0433 43 1 6.3362 5.1882 6.4131 44 1 4.4638 4.6142 8.0260 45 1 4.6944 2.8221 7.6570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281970190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:28 Heat of formation + Delta-G solvation = 105.080074 kcal Electronic energy + Delta-G solvation = -28041.562126 eV Core-core repulsion = 24382.417876 eV Total energy + Delta-G solvation = -3659.144249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15223 -39.19356 -36.99290 -36.58526 -34.95274 -31.85723 -31.25057 -29.76488 -28.91063 -26.40588 -25.67760 -25.10338 -23.29985 -22.53887 -22.21862 -21.28201 -20.77141 -19.57445 -18.51178 -17.61959 -16.86563 -16.37559 -15.88330 -15.61464 -14.92396 -14.65969 -14.38159 -14.28543 -14.18831 -13.62748 -13.41380 -12.98637 -12.94579 -12.83790 -12.30874 -12.00803 -11.94604 -11.67770 -11.57649 -11.30284 -11.26505 -10.92351 -10.88029 -10.75934 -10.72259 -10.65466 -10.47001 -10.35635 -9.91095 -9.79959 -9.74117 -9.62605 -9.09302 -8.82148 -8.53164 -8.41207 -7.86896 -6.11319 -5.40199 -3.18715 0.58203 1.42389 1.99618 2.73971 3.43807 3.47929 3.50239 3.63254 3.71715 3.99272 4.12202 4.59736 4.65948 4.69822 4.74123 4.80922 4.85952 5.06597 5.25386 5.33986 5.46148 5.49025 5.50227 5.59277 5.62971 5.64761 5.68314 5.83183 5.86151 5.96499 6.02787 6.10118 6.17434 6.23401 6.30821 6.38304 6.60842 6.94313 7.05753 7.10490 7.67497 7.83260 7.89571 8.17728 8.22666 8.82955 9.11300 9.47333 10.05742 10.65905 11.44187 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.005573 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.113884 B = 5022.881687 C = 7000.812869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.574 5.574 3 C -0.204 4.204 4 H 0.043 0.957 5 C 0.007 3.993 6 N -0.896 5.896 7 Si 0.887 3.113 8 H -0.285 1.285 9 H -0.289 1.289 10 H -0.281 1.281 11 C 0.140 3.860 12 C 0.120 3.880 13 H 0.064 0.936 14 C -0.127 4.127 15 C -0.131 4.131 16 C 0.090 3.910 17 N -0.602 5.602 18 C 0.582 3.418 19 O -0.440 6.440 20 C -0.255 4.255 21 C 0.048 3.952 22 N -0.478 5.478 23 C 0.043 3.957 24 C -0.094 4.094 25 C -0.150 4.150 26 C -0.156 4.156 27 S 0.232 5.768 28 H 0.003 0.997 29 H 0.092 0.908 30 H -0.005 1.005 31 H 0.251 0.749 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.188 0.812 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -4.256 15.403 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.294 5.294 3 C -0.335 4.335 4 H 0.061 0.939 5 C -0.191 4.191 6 N -0.541 5.541 7 Si 0.717 3.283 8 H -0.211 1.211 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.011 3.989 12 C 0.014 3.986 13 H 0.082 0.918 14 C -0.165 4.165 15 C -0.169 4.169 16 C -0.033 4.033 17 N -0.341 5.341 18 C 0.367 3.633 19 O -0.310 6.310 20 C -0.380 4.380 21 C -0.108 4.108 22 N -0.193 5.193 23 C -0.230 4.230 24 C -0.116 4.116 25 C -0.189 4.189 26 C -0.195 4.195 27 S 0.492 5.508 28 H 0.021 0.979 29 H 0.110 0.890 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.205 0.795 41 H 0.144 0.856 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.857 -3.131 15.129 16.903 hybrid contribution 1.104 0.094 -0.298 1.148 sum 7.961 -3.038 14.830 17.104 Atomic orbital electron populations 1.21302 0.83808 0.99199 0.97994 1.43399 1.01279 0.99652 1.85086 1.18680 1.09334 0.90735 1.14715 0.93913 1.25330 0.98457 0.98977 0.96290 1.69676 1.27718 1.31520 1.25231 0.86597 0.79512 0.84691 0.77513 1.21123 1.21528 1.20756 1.21206 0.96771 0.89593 0.91327 1.22484 0.95830 0.87195 0.93080 0.91839 1.22667 0.99378 0.97392 0.97092 1.22738 1.00979 0.95172 0.98018 1.22551 0.89762 0.92953 0.98066 1.47830 1.28522 1.14116 1.43597 1.15978 0.86057 0.79980 0.81286 1.91029 1.21354 1.71985 1.46601 1.26053 1.01068 1.01398 1.09518 1.22730 0.92848 0.99338 0.95891 1.65984 1.34587 1.01240 1.17443 1.26315 0.95909 0.98231 1.02578 1.20469 1.01716 0.94504 0.94880 1.22998 0.90476 1.03552 1.01875 1.23035 1.02722 1.03238 0.90548 1.84111 1.15633 1.12945 1.38130 0.97908 0.89025 0.98614 0.93875 0.93057 0.94746 0.90568 0.90703 0.90377 0.90994 0.91761 0.90794 0.79518 0.85634 0.87388 0.88239 0.88018 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.24 9.65 59.84 0.58 3.81 16 2 N -0.57 -15.02 1.58 -181.12 -0.29 -15.31 16 3 C -0.20 -5.79 6.54 -15.06 -0.10 -5.89 16 4 H 0.04 1.25 6.31 -52.48 -0.33 0.91 16 5 C 0.01 0.22 5.34 -17.43 -0.09 0.13 16 6 N -0.90 -27.25 10.81 55.49 0.60 -26.65 16 7 Si 0.89 23.04 29.55 -169.99 -5.02 18.01 16 8 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 10 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 11 C 0.14 2.99 5.26 -4.04 -0.02 2.97 16 12 C 0.12 2.11 3.22 -66.96 -0.22 1.89 16 13 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.13 -1.58 6.47 -24.90 -0.16 -1.74 16 15 C -0.13 -1.39 7.08 -24.58 -0.17 -1.56 16 16 C 0.09 1.18 5.08 -2.52 -0.01 1.16 16 17 N -0.60 -10.79 3.07 -164.54 -0.50 -11.29 16 18 C 0.58 12.28 5.35 -12.85 -0.07 12.21 16 19 O -0.44 -11.08 10.54 5.20 0.05 -11.03 16 20 C -0.26 -4.78 6.42 -37.10 -0.24 -5.02 16 21 C 0.05 0.78 9.83 -18.85 -0.19 0.60 16 22 N -0.48 -7.59 9.98 -11.50 -0.11 -7.71 16 23 C 0.04 0.65 6.96 -13.29 -0.09 0.56 16 24 C -0.09 -1.08 6.28 -91.77 -0.58 -1.66 16 25 C -0.15 -1.47 10.12 -26.69 -0.27 -1.74 16 26 C -0.16 -1.44 10.24 -26.69 -0.27 -1.71 16 27 S 0.23 4.01 23.02 -107.50 -2.47 1.53 16 28 H 0.00 0.08 6.42 -51.93 -0.33 -0.26 16 29 H 0.09 2.73 5.17 -51.93 -0.27 2.46 16 30 H 0.00 -0.12 7.97 -51.93 -0.41 -0.54 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.05 1.12 7.91 -51.93 -0.41 0.71 16 33 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 39 H 0.07 0.88 5.97 -51.93 -0.31 0.57 16 40 H 0.19 2.58 4.37 -52.49 -0.23 2.35 16 41 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.11 1.20 7.84 -51.93 -0.41 0.79 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -34.11 362.68 -10.63 -44.75 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.44 Total: -1.79 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.90 Total: 4.02 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.31 Total: -60.96 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.05 Total: -11.03 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -2.47 Total: 1.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.11 -10.63 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281970190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.826 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds