Wall clock time and date at job start Tue Mar 31 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36938 * 120.00095 * 2 1 4 4 H 1.08008 * 120.00010 * 136.70624 * 3 2 1 5 5 C 1.38813 * 120.00279 * 316.71101 * 3 2 1 6 6 N 1.31621 * 119.99601 * 356.87097 * 5 3 2 7 7 Si 1.86798 * 120.00105 * 176.87618 * 5 3 2 8 8 H 1.48490 * 109.47290 * 59.99660 * 7 5 3 9 9 H 1.48500 * 109.47008 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46996 * 299.99182 * 7 5 3 11 11 C 1.46503 * 120.00242 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46738 * 282.50031 * 11 2 1 13 13 H 1.09005 * 109.99900 * 62.37780 * 12 11 2 14 14 C 1.54316 * 109.77278 * 183.53417 * 12 11 2 15 15 C 1.55161 * 102.86482 * 141.88716 * 14 12 11 16 16 C 1.54913 * 101.57831 * 324.30197 * 15 14 12 17 17 N 1.47020 * 109.88479 * 301.28364 * 12 11 2 18 18 C 1.34778 * 125.65210 * 61.67813 * 17 12 11 19 19 O 1.21692 * 119.99391 * 5.43384 * 18 17 12 20 20 C 1.46682 * 120.00390 * 185.44269 * 18 17 12 21 21 C 1.35663 * 126.12959 * 7.45083 * 20 18 17 22 22 N 1.30939 * 114.18753 * 179.79098 * 21 20 18 23 23 C 1.29428 * 117.36617 * 0.52310 * 22 21 20 24 24 C 1.50697 * 124.80807 * 179.73147 * 23 22 21 25 25 C 1.53006 * 117.49468 * 8.72325 * 24 23 22 26 26 C 1.53003 * 117.49917 * 300.06600 * 24 23 22 27 27 S 1.70951 * 110.38942 * 359.71122 * 23 22 21 28 28 H 1.08991 * 109.47446 * 276.91311 * 1 2 3 29 29 H 1.09005 * 109.47302 * 36.91738 * 1 2 3 30 30 H 1.09005 * 109.47282 * 156.91064 * 1 2 3 31 31 H 0.97001 * 119.99956 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47346 * 162.50324 * 11 2 1 33 33 H 1.08996 * 109.47186 * 42.49839 * 11 2 1 34 34 H 1.08991 * 110.92798 * 23.46946 * 14 12 11 35 35 H 1.08998 * 110.59065 * 260.14210 * 14 12 11 36 36 H 1.08994 * 111.00295 * 206.23199 * 15 14 12 37 37 H 1.08997 * 111.00521 * 82.37232 * 15 14 12 38 38 H 1.08996 * 110.36860 * 278.17306 * 16 15 14 39 39 H 1.08999 * 110.46086 * 155.89440 * 16 15 14 40 40 H 1.07995 * 122.90198 * 0.02562 * 21 20 18 41 41 H 1.08994 * 115.55614 * 154.39151 * 24 23 22 42 42 H 1.09002 * 117.50307 * 0.02562 * 25 24 23 43 43 H 1.09002 * 117.49828 * 145.02226 * 25 24 23 44 44 H 1.08995 * 117.50009 * 214.97529 * 26 24 23 45 45 H 1.08999 * 117.49754 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.0093 1.3132 0.6414 5 6 1.7389 2.2246 -0.8243 6 7 0.7295 2.0491 -1.6506 7 14 2.6188 3.8711 -0.7609 8 1 4.0498 3.6813 -1.1089 9 1 1.9932 4.8043 -1.7320 10 1 2.5130 4.4365 0.6082 11 6 2.1975 -1.2687 -0.0006 12 6 2.1821 -1.8671 1.4075 13 1 1.1574 -2.0853 1.7087 14 6 3.0264 -3.1585 1.4352 15 6 3.7257 -3.0844 2.8183 16 6 3.9794 -1.5625 2.9574 17 7 2.7927 -0.9258 2.3576 18 6 2.3394 0.3121 2.6380 19 8 1.2889 0.6981 2.1602 20 6 3.1123 1.1942 3.5191 21 6 4.3564 0.9512 4.0026 22 7 4.8298 1.9025 4.7678 23 6 4.0719 2.9307 4.9764 24 6 4.4447 4.1149 5.8307 25 6 5.8879 4.1980 6.3318 26 6 4.7582 3.8517 7.3050 27 16 2.5884 2.7556 4.1453 28 1 -0.3634 0.1237 1.0201 29 1 -0.3634 0.8216 -0.6173 30 1 -0.3634 -0.9454 -0.4030 31 1 0.4427 2.7747 -2.2268 32 1 3.2280 -1.0932 -0.3095 33 1 1.7230 -1.9619 -0.6951 34 1 3.7618 -3.1601 0.6309 35 1 2.3846 -4.0374 1.3743 36 1 4.6646 -3.6379 2.8115 37 1 3.0673 -3.4445 3.6088 38 1 4.8793 -1.2766 2.4128 39 1 4.0684 -1.2854 4.0078 40 1 4.9099 0.0527 3.7731 41 1 3.9437 5.0504 5.5820 42 1 6.5679 3.3964 6.0433 43 1 6.3362 5.1882 6.4131 44 1 4.4638 4.6142 8.0260 45 1 4.6944 2.8221 7.6570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281970190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:27 Heat of formation + Delta-G solvation = 84.112153 kcal Electronic energy + Delta-G solvation = -28042.471363 eV Core-core repulsion = 24382.417876 eV Total energy + Delta-G solvation = -3660.053486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50362 -40.49949 -38.17648 -37.79116 -36.88846 -33.59938 -32.79691 -31.13703 -30.37954 -27.85267 -27.61316 -26.67766 -24.69738 -23.43771 -23.26902 -22.83053 -22.12632 -20.92254 -19.81216 -18.91458 -18.85224 -17.62997 -17.26370 -16.90493 -16.63673 -16.21873 -15.72104 -15.56178 -15.43693 -15.28315 -14.91360 -14.69726 -14.40218 -13.98295 -13.55929 -13.46140 -13.31538 -13.16531 -13.03296 -12.84107 -12.60832 -12.42496 -12.36567 -12.31516 -11.97590 -11.91448 -11.81902 -11.70712 -11.67844 -11.58692 -11.51127 -10.95957 -10.60583 -10.41154 -10.38219 -9.78504 -9.46047 -8.20957 -7.53146 -5.39391 -0.71983 0.11853 0.70375 1.33410 1.36358 1.41918 1.46623 2.23855 2.48707 2.49652 2.84164 3.05533 3.39686 3.60605 3.69601 3.74921 3.85560 3.93185 4.05762 4.10784 4.16571 4.19307 4.31842 4.33219 4.52917 4.59108 4.74269 4.78523 4.85118 4.89547 4.95824 4.97097 5.01410 5.04563 5.15220 5.17316 5.24984 5.29224 5.42927 5.45453 5.62125 5.78469 5.95628 6.52951 6.62665 6.77811 7.30645 7.57529 7.98396 8.52587 9.25642 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010341 B = 0.005573 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.113884 B = 5022.881687 C = 7000.812869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.586 5.586 3 C -0.188 4.188 4 H 0.033 0.967 5 C -0.051 4.051 6 N -0.930 5.930 7 Si 0.937 3.063 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.283 1.283 11 C 0.138 3.862 12 C 0.122 3.878 13 H 0.043 0.957 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.080 3.920 17 N -0.606 5.606 18 C 0.580 3.420 19 O -0.503 6.503 20 C -0.295 4.295 21 C 0.074 3.926 22 N -0.489 5.489 23 C 0.076 3.924 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.136 4.136 27 S 0.185 5.815 28 H -0.012 1.012 29 H 0.062 0.938 30 H 0.011 0.989 31 H 0.244 0.756 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.213 0.787 41 H 0.141 0.859 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.247 -5.304 17.872 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.307 5.307 3 C -0.320 4.320 4 H 0.050 0.950 5 C -0.245 4.245 6 N -0.578 5.578 7 Si 0.766 3.234 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.209 1.209 11 C 0.011 3.989 12 C 0.016 3.984 13 H 0.061 0.939 14 C -0.154 4.154 15 C -0.153 4.153 16 C -0.042 4.042 17 N -0.342 5.342 18 C 0.366 3.634 19 O -0.377 6.377 20 C -0.420 4.420 21 C -0.083 4.083 22 N -0.203 5.203 23 C -0.198 4.198 24 C -0.146 4.146 25 C -0.179 4.179 26 C -0.175 4.175 27 S 0.445 5.555 28 H 0.006 0.994 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.229 0.771 41 H 0.159 0.841 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.103 -4.247 17.617 20.748 hybrid contribution 0.226 0.370 -0.828 0.935 sum 10.329 -3.877 16.789 20.089 Atomic orbital electron populations 1.20978 0.84810 0.98637 0.96494 1.43512 1.01060 1.00846 1.85269 1.18672 1.08420 0.91815 1.13075 0.94957 1.25922 0.99656 1.01954 0.96997 1.69838 1.29366 1.31928 1.26672 0.85789 0.78824 0.81641 0.77154 1.20322 1.21464 1.20919 1.21397 0.95694 0.87727 0.94091 1.22327 0.96408 0.89294 0.90341 0.93853 1.22644 0.99155 0.94788 0.98836 1.22750 1.02639 0.93210 0.96678 1.22890 0.88078 0.94641 0.98598 1.48004 1.29626 1.13383 1.43192 1.16421 0.85491 0.80862 0.80610 1.90996 1.23818 1.73503 1.49371 1.25858 1.02379 1.02035 1.11735 1.23140 0.91648 0.99694 0.93827 1.66136 1.34356 1.01664 1.18177 1.27029 0.93900 0.98495 1.00376 1.20815 1.03836 0.93672 0.96291 1.23108 0.89264 1.04592 1.00974 1.23157 1.01178 1.03846 0.89310 1.84244 1.18011 1.13610 1.39586 0.99367 0.92066 0.97080 0.94608 0.93605 0.94044 0.89633 0.88545 0.86692 0.90237 0.90706 0.89470 0.77112 0.84122 0.88641 0.85664 0.85100 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.61 9.65 127.77 1.23 8.85 16 2 N -0.59 -31.72 1.58 -726.94 -1.15 -32.86 16 3 C -0.19 -11.06 6.54 84.03 0.55 -10.51 16 4 H 0.03 1.95 6.31 -2.91 -0.02 1.94 16 5 C -0.05 -3.13 5.34 84.86 0.45 -2.67 16 6 N -0.93 -59.10 10.81 21.65 0.23 -58.87 16 7 Si 0.94 48.90 29.55 68.60 2.03 50.93 16 8 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 9 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 10 H -0.28 -14.61 7.11 99.48 0.71 -13.90 16 11 C 0.14 5.92 5.26 86.38 0.45 6.38 16 12 C 0.12 4.20 3.22 45.34 0.15 4.34 16 13 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 14 C -0.12 -2.49 6.47 31.78 0.21 -2.29 16 15 C -0.11 -1.92 7.08 31.99 0.23 -1.69 16 16 C 0.08 1.84 5.08 86.86 0.44 2.29 16 17 N -0.61 -21.32 3.07 -792.70 -2.43 -23.75 16 18 C 0.58 25.05 5.35 86.45 0.46 25.52 16 19 O -0.50 -26.66 10.54 -4.32 -0.05 -26.71 16 20 C -0.30 -11.15 6.42 23.88 0.15 -11.00 16 21 C 0.07 2.28 9.83 84.23 0.83 3.11 16 22 N -0.49 -14.64 9.98 -190.31 -1.90 -16.54 16 23 C 0.08 2.19 6.96 88.46 0.62 2.80 16 24 C -0.12 -2.55 6.28 -11.54 -0.07 -2.62 16 25 C -0.14 -2.27 10.12 30.62 0.31 -1.96 16 26 C -0.14 -2.02 10.24 30.62 0.31 -1.71 16 27 S 0.19 6.54 23.02 -56.49 -1.30 5.24 16 28 H -0.01 -0.68 6.42 -2.39 -0.02 -0.70 16 29 H 0.06 3.87 5.17 -2.38 -0.01 3.86 16 30 H 0.01 0.54 7.97 -2.38 -0.02 0.52 16 31 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.05 1.99 7.91 -2.39 -0.02 1.97 16 33 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 39 H 0.09 1.80 5.97 -2.39 -0.01 1.79 16 40 H 0.21 5.25 4.37 -2.91 -0.01 5.24 16 41 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.10 1.83 7.84 -2.39 -0.02 1.81 16 43 H 0.13 1.41 8.14 -2.39 -0.02 1.40 16 44 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -79.66 362.68 2.77 -76.89 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.01 Total: 6.84 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 6.32 Total: 18.83 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -5.24 Total: -132.02 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.93 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.30 Total: 5.24 kcal Total: -79.66 2.77 -76.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281970190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.000 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds