Wall clock time and date at job start Tue Mar 31 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99682 * 2 1 4 4 O 1.21684 * 120.00137 * 182.78753 * 3 2 1 5 5 C 1.46683 * 119.99988 * 2.78633 * 3 2 1 6 6 C 1.35665 * 126.12784 * 187.54729 * 5 3 2 7 7 N 1.30946 * 114.18562 * 179.78748 * 6 5 3 8 8 C 1.29428 * 117.36817 * 0.52115 * 7 6 5 9 9 C 1.50699 * 124.80845 * 179.73072 * 8 7 6 10 10 C 1.53005 * 117.49556 * 8.59895 * 9 8 7 11 11 C 1.53001 * 60.00050 * 252.51348 * 10 9 8 12 12 S 1.70950 * 110.38707 * 359.71078 * 8 7 6 13 13 C 1.46496 * 120.00284 * 179.97438 * 2 1 3 14 14 H 1.09003 * 109.47226 * 180.02562 * 13 2 1 15 15 C 1.53007 * 109.46806 * 60.00421 * 13 2 1 16 16 N 1.46496 * 109.47228 * 54.99760 * 15 13 2 17 17 C 1.36935 * 119.99941 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00227 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99745 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47137 * 89.99871 * 21 19 17 23 23 H 1.48506 * 109.47170 * 209.99729 * 21 19 17 24 24 H 1.48496 * 109.47332 * 329.99900 * 21 19 17 25 25 C 1.52992 * 109.47564 * 300.00317 * 13 2 1 26 26 C 1.53001 * 117.49942 * 231.25469 * 25 13 2 27 27 C 1.53002 * 117.50015 * 299.91222 * 25 13 2 28 28 H 1.09007 * 109.47278 * 274.78011 * 1 2 3 29 29 H 1.08994 * 109.47376 * 34.78243 * 1 2 3 30 30 H 1.09002 * 109.46795 * 154.78723 * 1 2 3 31 31 H 1.07990 * 122.90629 * 359.95769 * 6 5 3 32 32 H 1.08997 * 115.55019 * 154.30424 * 9 8 7 33 33 H 1.09006 * 117.49910 * 0.02562 * 10 9 8 34 34 H 1.08999 * 117.49915 * 145.01838 * 10 9 8 35 35 H 1.09000 * 117.49439 * 252.51582 * 11 10 9 36 36 H 1.08996 * 117.52104 * 107.48546 * 11 10 9 37 37 H 1.08999 * 109.46810 * 175.00344 * 15 13 2 38 38 H 1.09002 * 109.46566 * 294.99677 * 15 13 2 39 39 H 0.97001 * 119.99907 * 0.02562 * 16 15 13 40 40 H 0.96997 * 120.00305 * 179.97438 * 20 19 17 41 41 H 1.09000 * 115.55235 * 85.58005 * 25 13 2 42 42 H 1.08999 * 117.49495 * 214.99730 * 26 25 13 43 43 H 1.08998 * 117.49817 * 0.02562 * 26 25 13 44 44 H 1.09005 * 117.49531 * 359.97438 * 27 25 13 45 45 H 1.08996 * 117.50759 * 144.98900 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3546 1.1680 -0.0512 5 6 1.4066 2.4368 0.0618 6 6 1.9414 3.6761 -0.0747 7 7 1.0703 4.6494 0.0169 8 6 -0.1641 4.3249 0.2317 9 6 -1.2996 5.3057 0.3715 10 6 -1.0086 6.7735 0.0520 11 6 -1.2115 6.3319 1.5028 12 16 -0.3240 2.6259 0.3340 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0694 0.0009 15 6 1.8279 -2.0715 -1.2484 16 7 2.0707 -1.2572 -2.4418 17 6 1.8113 -1.7699 -3.6848 18 1 1.4282 -2.7746 -3.7854 19 6 2.0408 -0.9982 -4.8157 20 7 1.7920 -1.4912 -6.0104 21 14 2.7041 0.7393 -4.6417 22 1 4.1886 0.7073 -4.6661 23 1 2.2085 1.5733 -5.7662 24 1 2.2427 1.3189 -3.3548 25 6 1.8279 -2.0705 1.2500 26 6 2.9742 -2.6049 2.1111 27 6 2.1227 -1.4349 2.6102 28 1 -0.3634 0.0856 1.0241 29 1 -0.3634 0.8440 -0.5862 30 1 -0.3633 -0.9298 -0.4378 31 1 2.9940 3.8451 -0.2469 32 1 -2.2871 4.9210 0.1166 33 1 0.0041 7.0295 -0.2596 34 1 -1.8047 7.3547 -0.4132 35 1 -2.1411 6.6227 1.9920 36 1 -0.3324 6.2974 2.1464 37 1 2.4377 -2.9738 -1.2939 38 1 0.7742 -2.3469 -1.2046 39 1 2.4158 -0.3552 -2.3516 40 1 1.9520 -0.9518 -6.8006 41 1 0.9324 -2.6861 1.1658 42 1 2.8327 -3.5722 2.5933 43 1 3.9915 -2.3849 1.7877 44 1 2.5804 -0.4456 2.6148 45 1 1.4212 -1.6322 3.4207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283554165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:50 Heat of formation + Delta-G solvation = 90.586431 kcal Electronic energy + Delta-G solvation = -27094.952646 eV Core-core repulsion = 23435.179906 eV Total energy + Delta-G solvation = -3659.772741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39988 -39.69398 -37.64773 -36.96943 -35.40681 -34.26106 -31.66102 -30.52467 -28.77418 -27.20833 -26.35848 -24.16481 -23.01379 -22.67366 -22.38813 -21.66665 -21.21482 -19.80389 -18.71770 -18.40011 -17.70691 -16.82935 -16.46657 -15.90991 -15.73322 -15.07777 -14.89891 -14.69160 -14.49337 -14.19874 -14.01558 -13.65416 -13.42695 -13.08310 -12.71547 -12.54029 -12.50890 -12.24088 -11.90947 -11.83389 -11.60088 -11.52067 -11.20370 -11.12257 -11.00627 -10.93595 -10.80141 -10.44848 -10.21775 -10.11223 -9.85926 -9.63145 -9.59303 -9.40677 -8.94640 -8.90618 -8.46656 -7.23895 -5.77683 -3.12741 0.18103 1.08777 1.52639 2.38607 2.89186 3.22177 3.40667 3.46358 3.50292 3.53518 3.85340 3.90747 4.44142 4.48017 4.51471 4.60867 4.65146 4.68263 4.89815 4.96617 5.04332 5.11038 5.21054 5.23741 5.31382 5.38283 5.47465 5.49590 5.56779 5.60337 5.65928 5.69060 5.74993 5.85210 5.87958 5.89124 6.04269 6.10221 6.17995 6.30438 6.51846 6.72900 7.35375 7.57645 7.97688 8.15816 8.41477 9.20804 9.93878 10.13524 11.40446 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.004757 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.161500 B = 5884.740692 C = 7880.389124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.587 5.587 3 C 0.595 3.405 4 O -0.528 6.528 5 C -0.292 4.292 6 C 0.120 3.880 7 N -0.483 5.483 8 C 0.054 3.946 9 C -0.101 4.101 10 C -0.150 4.150 11 C -0.154 4.154 12 S 0.206 5.794 13 C 0.159 3.841 14 H 0.105 0.895 15 C 0.152 3.848 16 N -0.752 5.752 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.933 5.933 21 Si 0.879 3.121 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.279 1.279 25 C -0.160 4.160 26 C -0.167 4.167 27 C -0.173 4.173 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.185 0.815 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.030 0.970 39 H 0.363 0.637 40 H 0.259 0.741 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 9.460 20.552 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.319 5.319 3 C 0.382 3.618 4 O -0.407 6.407 5 C -0.416 4.416 6 C -0.038 4.038 7 N -0.197 5.197 8 C -0.219 4.219 9 C -0.122 4.122 10 C -0.189 4.189 11 C -0.193 4.193 12 S 0.466 5.534 13 C 0.057 3.943 14 H 0.123 0.877 15 C 0.024 3.976 16 N -0.398 5.398 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.187 4.187 20 N -0.580 5.580 21 Si 0.710 3.290 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.180 4.180 26 C -0.205 4.205 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.202 0.798 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.196 0.804 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.695 9.151 20.446 24.029 hybrid contribution 1.264 1.373 -0.375 1.904 sum -7.431 10.525 20.071 23.850 Atomic orbital electron populations 1.21950 0.80060 1.04130 1.01528 1.47502 1.06758 1.05472 1.72119 1.16764 0.86598 0.81896 0.76579 1.90827 1.12542 1.86512 1.50807 1.25764 0.96910 0.99542 1.19389 1.22083 1.00850 0.85278 0.95540 1.66156 1.00512 1.36141 1.16892 1.26917 0.95141 0.99262 1.00572 1.20560 0.94879 0.89386 1.07414 1.23017 1.04261 0.93675 0.97911 1.23036 1.03818 1.00709 0.91744 1.84270 1.04663 1.00532 1.63892 1.21086 0.97847 0.81667 0.93735 0.87737 1.20934 0.98467 0.93505 0.84701 1.42655 1.80224 1.14842 1.02113 1.19022 1.36829 0.99850 0.81657 0.89115 1.24605 1.01250 0.97696 0.95111 1.69692 1.54585 1.36885 0.96887 0.86631 0.79472 0.86197 0.76741 1.20887 1.21719 1.20578 1.22570 1.00930 1.03097 0.91358 1.22981 0.96241 0.98127 1.03146 1.22843 1.03549 0.97926 0.96694 0.91908 0.91116 0.88263 0.79773 0.85370 0.87313 0.88018 0.87808 0.88328 0.94007 0.95204 0.80350 0.93055 0.87175 0.88574 0.88524 0.89128 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.26 59.84 0.49 1.36 16 2 N -0.59 -9.28 2.12 -175.48 -0.37 -9.65 16 3 C 0.59 10.59 7.35 -12.85 -0.09 10.49 16 4 O -0.53 -10.96 16.21 5.20 0.08 -10.87 16 5 C -0.29 -4.57 6.22 -37.09 -0.23 -4.80 16 6 C 0.12 1.86 11.10 -18.85 -0.21 1.65 16 7 N -0.48 -6.95 9.98 -11.50 -0.11 -7.07 16 8 C 0.05 0.66 6.96 -13.29 -0.09 0.57 16 9 C -0.10 -0.91 6.28 -91.77 -0.58 -1.49 16 10 C -0.15 -1.24 10.12 -26.73 -0.27 -1.51 16 11 C -0.15 -1.14 10.23 -26.73 -0.27 -1.42 16 12 S 0.21 2.41 18.13 -107.50 -1.95 0.47 16 13 C 0.16 2.54 2.38 -67.93 -0.16 2.38 16 14 H 0.10 1.89 6.66 -51.93 -0.35 1.55 16 15 C 0.15 2.88 5.50 -4.04 -0.02 2.85 16 16 N -0.75 -18.35 5.24 -59.91 -0.31 -18.67 16 17 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 21 Si 0.88 23.69 27.73 -169.99 -4.71 18.97 16 22 H -0.28 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.28 -7.38 6.52 56.52 0.37 -7.01 16 25 C -0.16 -1.93 4.83 -90.62 -0.44 -2.36 16 26 C -0.17 -1.82 10.18 -26.69 -0.27 -2.09 16 27 C -0.17 -1.88 10.13 -26.69 -0.27 -2.15 16 28 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 29 H 0.07 0.94 4.74 -24.86 -0.12 0.82 16 30 H 0.10 1.25 6.53 -51.93 -0.34 0.91 16 31 H 0.19 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.09 7.84 -51.93 -0.41 0.68 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 39 H 0.36 9.20 4.93 -40.82 -0.20 8.99 16 40 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 41 H 0.11 1.19 8.11 -51.93 -0.42 0.77 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -35.07 380.67 -9.94 -45.02 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.41 Total: 8.51 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.67 Total: -3.48 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -0.03 Total: -64.35 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.71 Total: 18.97 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.95 Total: 0.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.07 -9.94 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283554165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.602 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds