Wall clock time and date at job start Tue Mar 31 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99682 * 2 1 4 4 O 1.21684 * 120.00137 * 182.78753 * 3 2 1 5 5 C 1.46683 * 119.99988 * 2.78633 * 3 2 1 6 6 C 1.35665 * 126.12784 * 187.54729 * 5 3 2 7 7 N 1.30946 * 114.18562 * 179.78748 * 6 5 3 8 8 C 1.29428 * 117.36817 * 0.52115 * 7 6 5 9 9 C 1.50699 * 124.80845 * 179.73072 * 8 7 6 10 10 C 1.53005 * 117.49556 * 8.59895 * 9 8 7 11 11 C 1.53001 * 60.00050 * 252.51348 * 10 9 8 12 12 S 1.70950 * 110.38707 * 359.71078 * 8 7 6 13 13 C 1.46496 * 120.00284 * 179.97438 * 2 1 3 14 14 H 1.09003 * 109.47226 * 180.02562 * 13 2 1 15 15 C 1.53007 * 109.46806 * 60.00421 * 13 2 1 16 16 N 1.46496 * 109.47228 * 54.99760 * 15 13 2 17 17 C 1.36935 * 119.99941 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00227 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99745 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47137 * 89.99871 * 21 19 17 23 23 H 1.48506 * 109.47170 * 209.99729 * 21 19 17 24 24 H 1.48496 * 109.47332 * 329.99900 * 21 19 17 25 25 C 1.52992 * 109.47564 * 300.00317 * 13 2 1 26 26 C 1.53001 * 117.49942 * 231.25469 * 25 13 2 27 27 C 1.53002 * 117.50015 * 299.91222 * 25 13 2 28 28 H 1.09007 * 109.47278 * 274.78011 * 1 2 3 29 29 H 1.08994 * 109.47376 * 34.78243 * 1 2 3 30 30 H 1.09002 * 109.46795 * 154.78723 * 1 2 3 31 31 H 1.07990 * 122.90629 * 359.95769 * 6 5 3 32 32 H 1.08997 * 115.55019 * 154.30424 * 9 8 7 33 33 H 1.09006 * 117.49910 * 0.02562 * 10 9 8 34 34 H 1.08999 * 117.49915 * 145.01838 * 10 9 8 35 35 H 1.09000 * 117.49439 * 252.51582 * 11 10 9 36 36 H 1.08996 * 117.52104 * 107.48546 * 11 10 9 37 37 H 1.08999 * 109.46810 * 175.00344 * 15 13 2 38 38 H 1.09002 * 109.46566 * 294.99677 * 15 13 2 39 39 H 0.97001 * 119.99907 * 0.02562 * 16 15 13 40 40 H 0.96997 * 120.00305 * 179.97438 * 20 19 17 41 41 H 1.09000 * 115.55235 * 85.58005 * 25 13 2 42 42 H 1.08999 * 117.49495 * 214.99730 * 26 25 13 43 43 H 1.08998 * 117.49817 * 0.02562 * 26 25 13 44 44 H 1.09005 * 117.49531 * 359.97438 * 27 25 13 45 45 H 1.08996 * 117.50759 * 144.98900 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3546 1.1680 -0.0512 5 6 1.4066 2.4368 0.0618 6 6 1.9414 3.6761 -0.0747 7 7 1.0703 4.6494 0.0169 8 6 -0.1641 4.3249 0.2317 9 6 -1.2996 5.3057 0.3715 10 6 -1.0086 6.7735 0.0520 11 6 -1.2115 6.3319 1.5028 12 16 -0.3240 2.6259 0.3340 13 6 2.1975 -1.2687 0.0006 14 1 3.2692 -1.0694 0.0009 15 6 1.8279 -2.0715 -1.2484 16 7 2.0707 -1.2572 -2.4418 17 6 1.8113 -1.7699 -3.6848 18 1 1.4282 -2.7746 -3.7854 19 6 2.0408 -0.9982 -4.8157 20 7 1.7920 -1.4912 -6.0104 21 14 2.7041 0.7393 -4.6417 22 1 4.1886 0.7073 -4.6661 23 1 2.2085 1.5733 -5.7662 24 1 2.2427 1.3189 -3.3548 25 6 1.8279 -2.0705 1.2500 26 6 2.9742 -2.6049 2.1111 27 6 2.1227 -1.4349 2.6102 28 1 -0.3634 0.0856 1.0241 29 1 -0.3634 0.8440 -0.5862 30 1 -0.3633 -0.9298 -0.4378 31 1 2.9940 3.8451 -0.2469 32 1 -2.2871 4.9210 0.1166 33 1 0.0041 7.0295 -0.2596 34 1 -1.8047 7.3547 -0.4132 35 1 -2.1411 6.6227 1.9920 36 1 -0.3324 6.2974 2.1464 37 1 2.4377 -2.9738 -1.2939 38 1 0.7742 -2.3469 -1.2046 39 1 2.4158 -0.3552 -2.3516 40 1 1.9520 -0.9518 -6.8006 41 1 0.9324 -2.6861 1.1658 42 1 2.8327 -3.5722 2.5933 43 1 3.9915 -2.3849 1.7877 44 1 2.5804 -0.4456 2.6148 45 1 1.4212 -1.6322 3.4207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283554165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:49 Heat of formation + Delta-G solvation = 68.391419 kcal Electronic energy + Delta-G solvation = -27095.915094 eV Core-core repulsion = 23435.179906 eV Total energy + Delta-G solvation = -3660.735189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60003 -40.76955 -38.75683 -37.75146 -36.81274 -35.93259 -33.64896 -31.83002 -30.23101 -28.31462 -27.46603 -25.87212 -24.14900 -23.30188 -23.25979 -23.01822 -22.45364 -21.02037 -19.79052 -19.72955 -19.47247 -17.91414 -17.61107 -17.05894 -16.80684 -16.68269 -16.18495 -15.90422 -15.57493 -15.42737 -15.23001 -14.96753 -14.80117 -14.71630 -14.29119 -13.76813 -13.63284 -13.62292 -13.23167 -13.05493 -12.77389 -12.65694 -12.42867 -12.38203 -12.34511 -12.10623 -11.91267 -11.88447 -11.67084 -11.43877 -11.20331 -11.10574 -10.97368 -10.63595 -10.43071 -10.05142 -9.58848 -9.36126 -8.11281 -5.41424 -0.88376 0.07778 0.50504 1.22253 1.25967 1.27797 1.31569 1.70178 2.00467 2.35683 2.80725 2.94917 3.03845 3.21500 3.27850 3.49995 3.72140 3.82420 3.87678 3.93819 3.97158 4.03966 4.08299 4.14094 4.22217 4.28905 4.34074 4.47291 4.52514 4.66520 4.77948 4.78082 4.85979 4.87615 4.95126 5.01003 5.02359 5.13031 5.25989 5.26787 5.27547 5.39336 5.69960 6.11917 6.14096 6.53579 6.86815 6.99595 7.77073 7.94013 9.10293 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.004757 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.161500 B = 5884.740692 C = 7880.389124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.587 5.587 3 C 0.586 3.414 4 O -0.574 6.574 5 C -0.331 4.331 6 C 0.112 3.888 7 N -0.506 5.506 8 C 0.051 3.949 9 C -0.117 4.117 10 C -0.154 4.154 11 C -0.137 4.137 12 S 0.277 5.723 13 C 0.167 3.833 14 H 0.075 0.925 15 C 0.148 3.852 16 N -0.759 5.759 17 C -0.222 4.222 18 H 0.073 0.927 19 C -0.047 4.047 20 N -0.974 5.974 21 Si 0.934 3.066 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.276 1.276 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.161 4.161 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.359 0.641 40 H 0.258 0.742 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 9.871 23.106 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.317 5.317 3 C 0.375 3.625 4 O -0.456 6.456 5 C -0.456 4.456 6 C -0.047 4.047 7 N -0.221 5.221 8 C -0.221 4.221 9 C -0.138 4.138 10 C -0.193 4.193 11 C -0.176 4.176 12 S 0.539 5.461 13 C 0.064 3.936 14 H 0.094 0.906 15 C 0.021 3.979 16 N -0.404 5.404 17 C -0.353 4.353 18 H 0.090 0.910 19 C -0.240 4.240 20 N -0.625 5.625 21 Si 0.765 3.235 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.202 1.202 25 C -0.182 4.182 26 C -0.202 4.202 27 C -0.198 4.198 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.192 0.808 32 H 0.173 0.827 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.191 0.809 40 H 0.067 0.933 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.558 9.537 23.057 27.498 hybrid contribution 2.083 1.213 -1.096 2.648 sum -9.475 10.750 21.961 26.222 Atomic orbital electron populations 1.22213 0.78069 1.04236 1.03811 1.47618 1.08034 1.04824 1.71177 1.17123 0.86344 0.82996 0.76070 1.90783 1.14502 1.87286 1.53064 1.25708 0.99872 0.98509 1.21472 1.22096 1.01022 0.85880 0.95695 1.66217 1.01376 1.35994 1.18480 1.27627 0.95293 1.00745 0.98434 1.20910 0.94658 0.89170 1.09062 1.23065 1.03839 0.93347 0.99040 1.23125 1.04699 0.98729 0.91050 1.83791 1.00652 0.99309 1.62387 1.20885 0.96463 0.81950 0.94303 0.90634 1.21173 0.99480 0.93250 0.83953 1.42758 1.80024 1.15132 1.02444 1.19077 1.34210 0.98759 0.83259 0.90957 1.25158 1.02892 1.00818 0.95092 1.69807 1.56971 1.38221 0.97550 0.85737 0.78333 0.82797 0.76677 1.21586 1.21481 1.20170 1.22457 1.02350 1.03469 0.89896 1.23076 0.95202 0.99383 1.02548 1.22848 1.03607 0.96862 0.96470 0.88279 0.91588 0.87724 0.80791 0.82680 0.89645 0.85694 0.84740 0.89624 0.93929 0.93157 0.80909 0.93264 0.84887 0.86051 0.90037 0.91276 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.38 8.26 127.77 1.06 2.43 16 2 N -0.59 -18.00 2.12 -827.32 -1.76 -19.76 16 3 C 0.59 21.17 7.35 86.45 0.64 21.80 16 4 O -0.57 -24.97 16.21 -4.30 -0.07 -25.04 16 5 C -0.33 -10.36 6.22 23.88 0.15 -10.21 16 6 C 0.11 3.57 11.10 84.23 0.93 4.51 16 7 N -0.51 -14.53 9.98 -190.31 -1.90 -16.43 16 8 C 0.05 1.16 6.96 88.46 0.62 1.77 16 9 C -0.12 -1.77 6.28 -11.54 -0.07 -1.84 16 10 C -0.15 -2.21 10.12 30.60 0.31 -1.90 16 11 C -0.14 -1.62 10.23 30.60 0.31 -1.31 16 12 S 0.28 5.87 18.13 -56.49 -1.02 4.85 16 13 C 0.17 5.20 2.38 44.99 0.11 5.31 16 14 H 0.08 2.82 6.66 -2.39 -0.02 2.80 16 15 C 0.15 5.46 5.50 86.38 0.48 5.93 16 16 N -0.76 -36.90 5.24 -343.45 -1.80 -38.70 16 17 C -0.22 -12.79 10.47 84.03 0.88 -11.91 16 18 H 0.07 4.40 8.06 -2.91 -0.02 4.38 16 19 C -0.05 -2.87 5.50 84.86 0.47 -2.41 16 20 N -0.97 -63.15 13.97 21.65 0.30 -62.84 16 21 Si 0.93 50.06 27.73 68.60 1.90 51.96 16 22 H -0.29 -15.65 7.11 99.48 0.71 -14.94 16 23 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 24 H -0.28 -14.42 6.52 99.48 0.65 -13.77 16 25 C -0.16 -3.51 4.83 -10.79 -0.05 -3.57 16 26 C -0.16 -3.23 10.18 30.62 0.31 -2.91 16 27 C -0.16 -3.10 10.13 30.62 0.31 -2.79 16 28 H 0.10 1.55 7.75 -2.38 -0.02 1.53 16 29 H 0.07 1.59 4.74 -19.60 -0.09 1.50 16 30 H 0.10 2.30 6.53 -2.39 -0.02 2.28 16 31 H 0.18 5.62 8.06 -2.92 -0.02 5.60 16 32 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.66 7.84 -2.38 -0.02 1.64 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.69 6.86 -2.39 -0.02 1.68 16 39 H 0.36 18.23 4.93 -92.71 -0.46 17.77 16 40 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 41 H 0.13 2.33 8.11 -2.39 -0.02 2.31 16 42 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 44 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -78.84 380.67 2.51 -76.33 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.42 Total: 26.73 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.44 Total: 2.91 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -5.15 Total: -137.74 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.04 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.96 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.02 Total: 4.85 kcal Total: -78.84 2.51 -76.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283554165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.723 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds