Wall clock time and date at job start Tue Mar 31 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00325 * 2 1 4 4 H 1.07991 * 120.00237 * 154.07442 * 3 2 1 5 5 C 1.38809 * 119.99437 * 334.07327 * 3 2 1 6 6 N 1.31619 * 120.00583 * 352.05788 * 5 3 2 7 7 Si 1.86802 * 119.99653 * 172.05849 * 5 3 2 8 8 H 1.48497 * 109.47381 * 275.00038 * 7 5 3 9 9 H 1.48505 * 109.47289 * 35.00439 * 7 5 3 10 10 H 1.48498 * 109.47032 * 155.00001 * 7 5 3 11 11 C 1.46497 * 119.99572 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47473 * 264.11143 * 11 2 1 13 13 H 1.08994 * 109.87490 * 306.90484 * 12 11 2 14 14 C 1.54324 * 109.88059 * 68.08058 * 12 11 2 15 15 C 1.55153 * 102.94288 * 141.60891 * 14 12 11 16 16 C 1.54900 * 101.58336 * 324.49790 * 15 14 12 17 17 N 1.47020 * 109.88746 * 185.88584 * 12 11 2 18 18 C 1.34782 * 125.64563 * 61.60651 * 17 12 11 19 19 O 1.21684 * 119.99776 * 5.49932 * 18 17 12 20 20 C 1.46679 * 120.00286 * 185.49673 * 18 17 12 21 21 S 1.76220 * 126.12712 * 7.11485 * 20 18 17 22 22 C 1.70953 * 90.31236 * 179.97438 * 21 20 18 23 23 N 1.29429 * 110.39502 * 359.97438 * 22 21 20 24 24 C 1.30951 * 117.35829 * 359.74041 * 23 22 21 25 25 C 1.50702 * 122.90348 * 180.30672 * 24 23 22 26 26 C 1.53002 * 117.49757 * 8.80412 * 25 24 23 27 27 C 1.52998 * 60.00250 * 252.51447 * 26 25 24 28 28 H 1.09007 * 109.46724 * 93.50555 * 1 2 3 29 29 H 1.09000 * 109.47448 * 213.50072 * 1 2 3 30 30 H 1.08994 * 109.46989 * 333.50999 * 1 2 3 31 31 H 0.96998 * 120.00450 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47485 * 24.11982 * 11 2 1 33 33 H 1.09010 * 109.47181 * 144.11564 * 11 2 1 34 34 H 1.09000 * 110.72450 * 259.97850 * 14 12 11 35 35 H 1.09004 * 110.72211 * 23.24786 * 14 12 11 36 36 H 1.09005 * 111.00314 * 206.42097 * 15 14 12 37 37 H 1.09000 * 111.00047 * 82.57550 * 15 14 12 38 38 H 1.08998 * 110.36969 * 278.16890 * 16 15 14 39 39 H 1.09009 * 110.46187 * 155.89194 * 16 15 14 40 40 H 1.08003 * 124.80171 * 180.02562 * 22 21 20 41 41 H 1.08992 * 115.55253 * 154.51840 * 25 24 23 42 42 H 1.09000 * 117.50098 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49759 * 145.02295 * 26 25 24 44 44 H 1.08997 * 117.49860 * 252.51110 * 27 26 25 45 45 H 1.09006 * 117.49713 * 107.48679 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1482 1.2329 0.4089 5 6 1.5605 2.3274 -0.5256 6 7 0.4122 2.2415 -1.1632 7 14 2.3971 3.9859 -0.3280 8 1 2.0287 4.5729 0.9853 9 1 3.8700 3.8085 -0.3953 10 1 1.9578 4.8948 -1.4171 11 6 2.1974 -1.2688 0.0006 12 6 2.5806 -1.6359 1.4356 13 1 3.1076 -0.8041 1.9028 14 6 1.3129 -1.9796 2.2457 15 6 1.7779 -3.1646 3.1327 16 6 2.7501 -3.9036 2.1797 17 7 3.4354 -2.8320 1.4345 18 6 4.6450 -2.9325 0.8485 19 8 5.1596 -1.9524 0.3433 20 6 5.3413 -4.2232 0.8199 21 16 4.6802 -5.7720 1.3393 22 6 6.1492 -6.5460 0.9323 23 7 6.9973 -5.6871 0.4653 24 6 6.6070 -4.4398 0.3827 25 6 7.4894 -3.3394 -0.1480 26 6 8.8156 -3.7465 -0.7933 27 6 8.8080 -3.0771 0.5824 28 1 -0.3633 -0.0628 -1.0258 29 1 -0.3634 -0.8569 0.5672 30 1 -0.3633 0.9197 0.4584 31 1 0.0006 3.0392 -1.5309 32 1 1.5668 -2.0525 -0.4190 33 1 3.1002 -1.1674 -0.6019 34 1 1.0074 -1.1336 2.8614 35 1 0.5038 -2.2879 1.5835 36 1 0.9369 -3.8026 3.4046 37 1 2.2982 -2.8069 4.0212 38 1 2.1957 -4.5465 1.4959 39 1 3.4708 -4.4898 2.7500 40 1 6.3418 -7.6024 1.0477 41 1 6.9675 -2.4799 -0.5686 42 1 9.0497 -4.8102 -0.8344 43 1 9.1663 -3.1549 -1.6389 44 1 9.1537 -2.0451 0.6419 45 1 9.0372 -3.7005 1.4468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328766112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:37 Heat of formation + Delta-G solvation = 73.958207 kcal Electronic energy + Delta-G solvation = -27244.128507 eV Core-core repulsion = 23583.634712 eV Total energy + Delta-G solvation = -3660.493795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58664 -39.64765 -37.25182 -36.48319 -35.28288 -32.03933 -31.35936 -30.52800 -29.00465 -26.39336 -25.97404 -25.15107 -23.50333 -22.73927 -22.32978 -21.46872 -21.01927 -19.80145 -18.49099 -18.14359 -16.69735 -16.51218 -16.40994 -15.80685 -15.36239 -14.81521 -14.69404 -14.42263 -14.29899 -13.91203 -13.68130 -13.34564 -13.23879 -12.94930 -12.78891 -12.40603 -12.00424 -11.91417 -11.64306 -11.52405 -11.31102 -11.09885 -10.86912 -10.80757 -10.79346 -10.65458 -10.42325 -10.36810 -10.13443 -9.96794 -9.85137 -9.76397 -9.60919 -9.48325 -8.90063 -8.54481 -8.33989 -6.62809 -5.68112 -3.15453 0.12416 1.03955 1.41495 2.31146 3.04379 3.22282 3.43473 3.49339 3.52731 3.86411 4.04588 4.46096 4.55183 4.60239 4.65268 4.79904 4.93982 5.02956 5.05924 5.14666 5.35896 5.38600 5.42076 5.53464 5.61128 5.64316 5.72835 5.77767 5.82531 5.97734 5.98875 6.14275 6.19256 6.20816 6.31712 6.45710 6.53109 6.73893 6.85155 7.03149 7.41376 7.43520 7.66978 7.74646 7.90257 8.28826 8.49725 9.31801 9.92344 10.42028 11.38449 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.003734 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.822854 B = 7496.818415 C = 9113.658674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.595 5.595 3 C -0.250 4.250 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.911 5.911 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.279 1.279 10 H -0.291 1.291 11 C 0.146 3.854 12 C 0.118 3.882 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.088 3.912 17 N -0.607 5.607 18 C 0.605 3.395 19 O -0.508 6.508 20 C -0.276 4.276 21 S 0.173 5.827 22 C 0.012 3.988 23 N -0.472 5.472 24 C 0.169 3.831 25 C -0.099 4.099 26 C -0.163 4.163 27 C -0.158 4.158 28 H 0.016 0.984 29 H -0.006 1.006 30 H 0.057 0.943 31 H 0.252 0.748 32 H 0.036 0.964 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.201 0.799 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -20.106 8.387 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.318 5.318 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.557 5.557 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.204 1.204 10 H -0.217 1.217 11 C 0.018 3.982 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.168 4.168 16 C -0.037 4.037 17 N -0.341 5.341 18 C 0.391 3.609 19 O -0.385 6.385 20 C -0.400 4.400 21 S 0.429 5.571 22 C -0.283 4.283 23 N -0.186 5.186 24 C 0.032 3.968 25 C -0.119 4.119 26 C -0.200 4.200 27 C -0.196 4.196 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.165 0.835 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.373 -20.050 8.245 22.899 hybrid contribution 0.844 1.246 -0.189 1.516 sum 8.217 -18.805 8.056 22.046 Atomic orbital electron populations 1.20852 0.82623 0.97028 0.97701 1.43782 1.01686 1.00357 1.85952 1.19215 0.99779 0.86023 1.32951 0.91392 1.25076 0.97683 0.98727 0.97958 1.70044 1.18350 1.27703 1.39575 0.86272 0.79233 0.83950 0.77125 1.21480 1.20422 1.21726 1.20981 0.96528 0.88725 0.92009 1.22671 0.89302 0.85644 1.01071 0.90217 1.22661 0.97105 0.97718 0.97804 1.22770 0.98459 0.97844 0.97726 1.22475 0.95678 0.90753 0.94769 1.48489 1.17152 1.15214 1.53259 1.16220 0.79760 0.85884 0.79030 1.90836 1.64985 1.36726 1.45908 1.25518 1.00170 0.98226 1.16037 1.84136 1.17234 0.98491 1.57262 1.28819 0.94544 1.04416 1.00566 1.66016 1.34630 1.01191 1.16756 1.19705 0.90871 0.90793 0.95399 1.20987 0.88325 0.97579 1.05037 1.22965 0.99029 1.01886 0.96125 1.22911 0.98720 1.01951 0.96023 0.96557 0.98721 0.92447 0.93807 0.94572 0.92608 0.89873 0.90417 0.89913 0.90724 0.90930 0.90849 0.78208 0.83499 0.87955 0.88422 0.88101 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.73 59.85 0.52 4.48 16 2 N -0.59 -15.14 2.80 -181.12 -0.51 -15.65 16 3 C -0.25 -7.07 9.64 -15.06 -0.15 -7.21 16 4 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 5 C 0.00 0.10 5.14 -17.43 -0.09 0.01 16 6 N -0.91 -26.97 10.67 55.49 0.59 -26.38 16 7 Si 0.90 22.54 29.56 -169.99 -5.02 17.52 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 C 0.15 3.19 5.13 -4.04 -0.02 3.17 16 12 C 0.12 2.13 3.05 -66.95 -0.20 1.92 16 13 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 14 C -0.11 -1.67 5.65 -24.90 -0.14 -1.81 16 15 C -0.13 -1.38 7.08 -24.59 -0.17 -1.55 16 16 C 0.09 0.99 5.30 -2.54 -0.01 0.97 16 17 N -0.61 -9.52 3.07 -164.55 -0.50 -10.03 16 18 C 0.60 10.41 7.51 -12.85 -0.10 10.32 16 19 O -0.51 -10.56 13.51 5.20 0.07 -10.49 16 20 C -0.28 -3.92 6.34 -37.10 -0.24 -4.15 16 21 S 0.17 1.63 18.95 -107.50 -2.04 -0.41 16 22 C 0.01 0.11 12.22 51.75 0.63 0.74 16 23 N -0.47 -5.88 9.81 -11.53 -0.11 -5.99 16 24 C 0.17 2.41 6.41 -83.89 -0.54 1.87 16 25 C -0.10 -1.41 5.51 -91.77 -0.51 -1.92 16 26 C -0.16 -1.90 10.08 -26.73 -0.27 -2.17 16 27 C -0.16 -1.91 10.23 -26.73 -0.27 -2.18 16 28 H 0.02 0.43 7.78 -51.93 -0.40 0.02 16 29 H -0.01 -0.11 6.16 -51.93 -0.32 -0.43 16 30 H 0.06 1.51 6.81 -51.93 -0.35 1.16 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.74 7.88 -51.93 -0.41 0.33 16 33 H 0.06 1.37 6.82 -51.92 -0.35 1.02 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 1.14 6.37 -51.93 -0.33 0.81 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 39 H 0.07 0.71 5.83 -41.50 -0.24 0.47 16 40 H 0.20 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.15 2.44 6.07 -51.93 -0.32 2.12 16 42 H 0.10 1.18 7.74 -51.93 -0.40 0.78 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -33.22 368.35 -10.00 -43.22 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.47 Total: 0.18 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.55 Total: 2.47 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.53 Total: -58.05 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.04 Total: -0.41 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.22 -10.00 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328766112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.180 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds