Wall clock time and date at job start Tue Mar 31 2020 18:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00677 * 2 1 4 4 O 1.21277 * 120.00514 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99523 * 0.02562 * 3 2 1 6 6 S 1.80999 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.76202 * 99.99965 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00077 * 359.97438 * 7 6 5 9 9 C 1.38801 * 119.99857 * 179.97438 * 7 6 5 10 10 N 1.31637 * 120.00023 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47188 * 60.00427 * 11 9 7 13 13 H 1.48506 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47350 * 300.00112 * 11 9 7 15 15 C 1.46506 * 120.00144 * 180.02562 * 2 1 3 16 16 C 1.53777 * 113.61445 * 59.99377 * 15 2 1 17 17 C 1.53776 * 87.08434 * 220.02332 * 16 15 2 18 18 N 1.46908 * 113.61428 * 139.98251 * 17 16 15 19 19 C 1.46893 * 110.99946 * 156.53264 * 18 17 16 20 20 C 1.50702 * 109.47171 * 180.02562 * 19 18 17 21 21 C 1.38225 * 119.61833 * 94.99516 * 20 19 18 22 22 C 1.38635 * 119.15939 * 180.02562 * 21 20 19 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61626 * 275.02194 * 20 19 18 26 26 C 1.53779 * 87.17205 * 25.39151 * 17 16 15 27 27 H 1.08996 * 109.47026 * 270.00094 * 1 2 3 28 28 H 1.09006 * 109.46789 * 29.99387 * 1 2 3 29 29 H 1.08994 * 109.47677 * 149.99661 * 1 2 3 30 30 H 1.09002 * 109.46727 * 299.99724 * 5 3 2 31 31 H 1.09003 * 109.47621 * 59.99197 * 5 3 2 32 32 H 0.97001 * 120.00021 * 179.97438 * 10 9 7 33 33 H 1.08991 * 112.91215 * 191.25390 * 15 2 1 34 34 H 1.09004 * 113.61579 * 105.47514 * 16 15 2 35 35 H 1.09001 * 113.61630 * 334.57560 * 16 15 2 36 36 H 1.08990 * 113.61676 * 270.80106 * 17 16 15 37 37 H 1.00890 * 110.99781 * 32.57365 * 18 17 16 38 38 H 1.09001 * 109.47499 * 60.00227 * 19 18 17 39 39 H 1.08999 * 109.46922 * 299.99706 * 19 18 17 40 40 H 1.07997 * 120.42090 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.78847 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 44 44 H 1.09007 * 113.61445 * 89.15927 * 26 17 16 45 45 H 1.08999 * 113.61690 * 220.05917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5618 3.8480 0.0012 7 6 1.4417 5.2082 0.0010 8 1 0.3764 5.0305 0.0002 9 6 1.9285 6.5080 0.0019 10 7 3.2269 6.7246 0.0024 11 14 0.7411 7.9500 0.0010 12 1 -0.1152 7.8869 1.2126 13 1 1.5073 9.2222 0.0016 14 1 -0.1126 7.8875 -1.2123 15 6 2.1975 -1.2688 -0.0006 16 6 1.8953 -2.1540 -1.2211 17 6 1.9128 -3.3524 -0.2577 18 7 0.8686 -4.3473 -0.5370 19 6 1.2422 -5.6655 -0.0071 20 6 0.1498 -6.6577 -0.3125 21 6 0.2420 -7.4492 -1.4420 22 6 -0.7686 -8.3584 -1.7140 23 6 -1.8392 -8.4373 -0.8362 24 6 -1.8660 -7.6090 0.2695 25 7 -0.8833 -6.7603 0.5005 26 6 1.5384 -2.3632 0.8586 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.7586 2.5302 -0.8892 31 1 0.7591 2.5299 0.8907 32 1 3.5671 7.6330 0.0027 33 1 3.2624 -1.1440 0.1954 34 1 2.6996 -2.1732 -1.9565 35 1 0.9182 -1.9656 -1.6660 36 1 2.8996 -3.7982 -0.1332 37 1 0.6719 -4.3973 -1.5253 38 1 1.3805 -5.5975 1.0719 39 1 2.1714 -5.9941 -0.4726 40 1 1.0906 -7.3605 -2.1041 41 1 -0.7231 -8.9901 -2.5888 42 1 -2.6444 -9.1340 -1.0172 43 1 -2.6986 -7.6610 0.9553 44 1 0.4635 -2.2321 0.9834 45 1 2.0551 -2.5510 1.7998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333037812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:31 Heat of formation + Delta-G solvation = 30.128538 kcal Electronic energy + Delta-G solvation = -24910.661879 eV Core-core repulsion = 21248.267487 eV Total energy + Delta-G solvation = -3662.394392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.65184 -40.16116 -38.27993 -35.54911 -33.92126 -32.83620 -32.40182 -31.34167 -29.10374 -27.03125 -26.38322 -25.71694 -25.45972 -23.93865 -23.17716 -22.13196 -19.87028 -18.96406 -17.65044 -17.32680 -17.01828 -16.79823 -16.17818 -15.91882 -15.61171 -15.41823 -15.06455 -14.78279 -14.66251 -14.07843 -13.75323 -13.68574 -13.63713 -13.24483 -12.96453 -12.67648 -12.62557 -12.52163 -12.20016 -12.13042 -12.05564 -11.77584 -11.33982 -11.02192 -11.01938 -10.92061 -10.74529 -10.66312 -10.31184 -9.80609 -9.77972 -9.50278 -9.29161 -9.03348 -8.80417 -8.40439 -8.19734 -6.47077 -6.18912 -3.89331 0.62983 0.84791 2.97214 3.08293 3.25362 3.25842 3.29797 3.32645 3.64007 3.80480 4.02555 4.23015 4.23837 4.39025 4.41263 4.50963 4.59211 4.67634 4.73722 4.79458 4.98932 5.01760 5.04085 5.15906 5.20622 5.22296 5.37863 5.40630 5.49821 5.60885 5.62660 5.65853 5.67875 5.71981 5.79510 5.83159 5.93170 5.95590 6.12026 6.18013 6.24141 6.70510 6.75509 6.95868 7.61061 7.62108 7.63014 8.37635 8.61243 9.26151 10.88449 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.001689 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.890343 B =16570.364601 C =17085.456252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.534 3.466 4 O -0.519 6.519 5 C -0.150 4.150 6 S -0.062 6.062 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.126 3.874 16 C -0.154 4.154 17 C 0.062 3.938 18 N -0.665 5.665 19 C 0.107 3.893 20 C 0.133 3.867 21 C -0.169 4.169 22 C -0.075 4.075 23 C -0.176 4.176 24 C 0.101 3.899 25 N -0.464 5.464 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.341 0.659 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.096 0.904 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -31.913 -3.059 33.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C 0.322 3.678 4 O -0.393 6.393 5 C -0.301 4.301 6 S 0.164 5.836 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.021 3.979 16 C -0.193 4.193 17 C -0.048 4.048 18 N -0.297 5.297 19 C -0.022 4.022 20 C -0.005 4.005 21 C -0.190 4.190 22 C -0.101 4.101 23 C -0.197 4.197 24 C -0.056 4.056 25 N -0.174 5.174 26 C -0.173 4.173 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.173 0.827 44 H 0.115 0.885 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.818 -31.052 -1.759 32.069 hybrid contribution -1.681 -0.041 -1.462 2.228 sum -9.498 -31.092 -3.221 32.670 Atomic orbital electron populations 1.21732 0.79750 1.03058 1.01847 1.47766 1.06642 1.05177 1.75008 1.20364 0.87933 0.84627 0.74893 1.90677 1.13797 1.86855 1.47976 1.23564 1.04519 0.97251 1.04718 1.85377 1.08139 0.93356 1.96705 1.22827 0.94296 0.92244 1.58979 0.90999 1.24987 0.95663 0.98346 0.94558 1.70014 1.11736 1.21719 1.46840 0.86230 0.80198 0.80313 0.78790 1.19937 1.20821 1.19965 1.22325 0.98133 0.81666 0.95771 1.23698 1.02980 0.95010 0.97599 1.22837 0.93310 0.90615 0.98049 1.60518 1.42964 1.05265 1.20926 1.20858 0.92210 0.86933 1.02193 1.21156 0.93906 0.94748 0.90718 1.22018 1.00465 0.97841 0.98640 1.21587 0.93128 0.96737 0.98692 1.22190 0.99661 1.01348 0.96454 1.22831 0.96321 0.90923 0.95572 1.67526 1.00905 1.18637 1.30292 1.23547 1.02436 0.93917 0.97361 0.92677 0.90747 0.91073 0.89281 0.89249 0.92162 0.86347 0.90926 0.88980 0.90482 0.84010 0.88979 0.93442 0.84979 0.84846 0.84800 0.82674 0.88546 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 8.85 59.84 0.53 1.42 16 2 N -0.61 -8.90 3.08 -172.90 -0.53 -9.43 16 3 C 0.53 10.41 7.69 -10.98 -0.08 10.32 16 4 O -0.52 -12.04 15.35 5.56 0.09 -11.96 16 5 C -0.15 -3.12 4.71 36.00 0.17 -2.95 16 6 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 10 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 11 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 15 C 0.13 1.56 4.20 -67.02 -0.28 1.27 16 16 C -0.15 -1.48 7.20 -25.92 -0.19 -1.67 16 17 C 0.06 0.52 4.12 -66.90 -0.28 0.24 16 18 N -0.67 -5.29 6.54 -107.14 -0.70 -5.99 16 19 C 0.11 0.80 5.85 -4.98 -0.03 0.77 16 20 C 0.13 1.09 6.29 -82.58 -0.52 0.57 16 21 C -0.17 -1.06 9.72 -39.44 -0.38 -1.44 16 22 C -0.08 -0.41 10.18 -39.27 -0.40 -0.81 16 23 C -0.18 -0.98 10.11 -39.44 -0.40 -1.38 16 24 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 25 N -0.46 -4.46 10.27 -9.47 -0.10 -4.56 16 26 C -0.13 -1.34 7.32 -25.83 -0.19 -1.53 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 29 H 0.07 0.66 6.34 -51.93 -0.33 0.33 16 30 H 0.09 1.71 7.40 -51.92 -0.38 1.33 16 31 H 0.09 1.74 8.11 -51.91 -0.42 1.32 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.12 1.68 7.24 -51.93 -0.38 1.30 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.87 6.92 -51.93 -0.36 0.52 16 36 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 37 H 0.34 2.44 8.55 -39.30 -0.34 2.11 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.27 8.03 -51.93 -0.42 -0.14 16 40 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 43 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.10 1.01 6.74 -51.92 -0.35 0.66 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -35.72 386.90 -10.61 -46.32 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.64 Total: 0.54 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.05 Total: -7.73 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.60 Total: -45.61 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.72 -10.61 -46.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333037812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.451 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds