Wall clock time and date at job start Tue Mar 31 2020 18:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00677 * 2 1 4 4 O 1.21277 * 120.00514 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99523 * 0.02562 * 3 2 1 6 6 S 1.80999 * 109.47146 * 179.97438 * 5 3 2 7 7 C 1.76202 * 99.99965 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00077 * 359.97438 * 7 6 5 9 9 C 1.38801 * 119.99857 * 179.97438 * 7 6 5 10 10 N 1.31637 * 120.00023 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47188 * 60.00427 * 11 9 7 13 13 H 1.48506 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47350 * 300.00112 * 11 9 7 15 15 C 1.46506 * 120.00144 * 180.02562 * 2 1 3 16 16 C 1.53777 * 113.61445 * 59.99377 * 15 2 1 17 17 C 1.53776 * 87.08434 * 220.02332 * 16 15 2 18 18 N 1.46908 * 113.61428 * 139.98251 * 17 16 15 19 19 C 1.46893 * 110.99946 * 156.53264 * 18 17 16 20 20 C 1.50702 * 109.47171 * 180.02562 * 19 18 17 21 21 C 1.38225 * 119.61833 * 94.99516 * 20 19 18 22 22 C 1.38635 * 119.15939 * 180.02562 * 21 20 19 23 23 C 1.38675 * 118.41956 * 0.02562 * 22 21 20 24 24 C 1.38186 * 119.16332 * 0.27967 * 23 22 21 25 25 N 1.31860 * 119.61626 * 275.02194 * 20 19 18 26 26 C 1.53779 * 87.17205 * 25.39151 * 17 16 15 27 27 H 1.08996 * 109.47026 * 270.00094 * 1 2 3 28 28 H 1.09006 * 109.46789 * 29.99387 * 1 2 3 29 29 H 1.08994 * 109.47677 * 149.99661 * 1 2 3 30 30 H 1.09002 * 109.46727 * 299.99724 * 5 3 2 31 31 H 1.09003 * 109.47621 * 59.99197 * 5 3 2 32 32 H 0.97001 * 120.00021 * 179.97438 * 10 9 7 33 33 H 1.08991 * 112.91215 * 191.25390 * 15 2 1 34 34 H 1.09004 * 113.61579 * 105.47514 * 16 15 2 35 35 H 1.09001 * 113.61630 * 334.57560 * 16 15 2 36 36 H 1.08990 * 113.61676 * 270.80106 * 17 16 15 37 37 H 1.00890 * 110.99781 * 32.57365 * 18 17 16 38 38 H 1.09001 * 109.47499 * 60.00227 * 19 18 17 39 39 H 1.08999 * 109.46922 * 299.99706 * 19 18 17 40 40 H 1.07997 * 120.42090 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.78847 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.41399 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.61418 * 179.70216 * 24 23 22 44 44 H 1.09007 * 113.61445 * 89.15927 * 26 17 16 45 45 H 1.08999 * 113.61690 * 220.05917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 16 2.5618 3.8480 0.0012 7 6 1.4417 5.2082 0.0010 8 1 0.3764 5.0305 0.0002 9 6 1.9285 6.5080 0.0019 10 7 3.2269 6.7246 0.0024 11 14 0.7411 7.9500 0.0010 12 1 -0.1152 7.8869 1.2126 13 1 1.5073 9.2222 0.0016 14 1 -0.1126 7.8875 -1.2123 15 6 2.1975 -1.2688 -0.0006 16 6 1.8953 -2.1540 -1.2211 17 6 1.9128 -3.3524 -0.2577 18 7 0.8686 -4.3473 -0.5370 19 6 1.2422 -5.6655 -0.0071 20 6 0.1498 -6.6577 -0.3125 21 6 0.2420 -7.4492 -1.4420 22 6 -0.7686 -8.3584 -1.7140 23 6 -1.8392 -8.4373 -0.8362 24 6 -1.8660 -7.6090 0.2695 25 7 -0.8833 -6.7603 0.5005 26 6 1.5384 -2.3632 0.8586 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.7586 2.5302 -0.8892 31 1 0.7591 2.5299 0.8907 32 1 3.5671 7.6330 0.0027 33 1 3.2624 -1.1440 0.1954 34 1 2.6996 -2.1732 -1.9565 35 1 0.9182 -1.9656 -1.6660 36 1 2.8996 -3.7982 -0.1332 37 1 0.6719 -4.3973 -1.5253 38 1 1.3805 -5.5975 1.0719 39 1 2.1714 -5.9941 -0.4726 40 1 1.0906 -7.3605 -2.1041 41 1 -0.7231 -8.9901 -2.5888 42 1 -2.6444 -9.1340 -1.0172 43 1 -2.6986 -7.6610 0.9553 44 1 0.4635 -2.2321 0.9834 45 1 2.0551 -2.5510 1.7998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333037812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:30 Heat of formation + Delta-G solvation = 5.496242 kcal Electronic energy + Delta-G solvation = -24911.730015 eV Core-core repulsion = 21248.267487 eV Total energy + Delta-G solvation = -3663.462528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40133 -41.01043 -39.47610 -36.47241 -34.89553 -34.57965 -33.29951 -31.95836 -30.61279 -28.01970 -27.68600 -27.07462 -26.49009 -24.38338 -24.14476 -22.64249 -21.00278 -20.07301 -19.56522 -18.30176 -17.74796 -17.44508 -17.20046 -16.87468 -16.81691 -16.53896 -16.37688 -15.87482 -15.77962 -15.40166 -14.60278 -14.55493 -14.46463 -14.25674 -14.11128 -14.03083 -13.66063 -13.29817 -13.20767 -13.17260 -13.12295 -12.90560 -12.84168 -12.65547 -12.55074 -12.13149 -11.81387 -11.69444 -11.50175 -11.12473 -10.85115 -10.77153 -10.29550 -10.27191 -9.96746 -9.61880 -9.38814 -8.67225 -8.33997 -6.12678 0.17706 0.41304 1.26175 1.44312 1.46165 1.55892 1.56777 2.12564 2.28200 2.79786 2.99836 3.26116 3.29588 3.42488 3.54920 3.63414 3.76189 3.86170 3.94928 4.03265 4.06744 4.20433 4.21306 4.28197 4.31918 4.46278 4.47508 4.56213 4.60507 4.66936 4.79118 4.81204 4.83506 4.91057 4.94157 5.02494 5.06885 5.22171 5.24665 5.31350 5.41645 5.64382 5.82234 6.04825 6.19898 6.32158 6.39962 7.06806 7.14188 7.15261 8.75028 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.001689 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.890343 B =16570.364601 C =17085.456252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.530 3.470 4 O -0.568 6.568 5 C -0.124 4.124 6 S -0.153 6.153 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.262 1.262 13 H -0.278 1.278 14 H -0.262 1.262 15 C 0.108 3.892 16 C -0.141 4.141 17 C 0.078 3.922 18 N -0.669 5.669 19 C 0.111 3.889 20 C 0.113 3.887 21 C -0.171 4.171 22 C -0.080 4.080 23 C -0.174 4.174 24 C 0.081 3.919 25 N -0.502 5.502 26 C -0.125 4.125 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.271 0.729 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.348 0.652 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.098 0.902 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 -33.681 -4.058 35.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.318 3.682 4 O -0.446 6.446 5 C -0.275 4.275 6 S 0.074 5.926 7 C -0.695 4.695 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.186 1.186 15 C 0.004 3.996 16 C -0.180 4.180 17 C -0.032 4.032 18 N -0.301 5.301 19 C -0.018 4.018 20 C -0.025 4.025 21 C -0.192 4.192 22 C -0.105 4.105 23 C -0.194 4.194 24 C -0.076 4.076 25 N -0.212 5.212 26 C -0.164 4.164 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.186 0.814 44 H 0.116 0.884 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.512 -32.880 -2.762 34.629 hybrid contribution -0.921 0.311 -1.147 1.503 sum -11.433 -32.569 -3.909 34.738 Atomic orbital electron populations 1.22010 0.77330 1.04511 1.03158 1.47777 1.08101 1.04363 1.72705 1.20176 0.87305 0.85545 0.75176 1.90658 1.15674 1.87526 1.50790 1.23387 1.02718 0.95073 1.06290 1.85560 1.12690 0.97269 1.97032 1.23170 0.94628 0.92669 1.59055 0.89933 1.26136 0.97620 1.01663 0.93679 1.70184 1.14125 1.22524 1.47902 0.84999 0.77594 0.75859 0.79512 1.18668 1.20332 1.18611 1.22551 0.97097 0.81168 0.98771 1.23609 1.03344 0.94331 0.96682 1.22654 0.93908 0.90316 0.96320 1.60432 1.42659 1.05547 1.21501 1.20822 0.92987 0.86627 1.01394 1.21289 0.93976 0.95675 0.91581 1.22257 1.01319 0.97406 0.98186 1.21988 0.92594 0.96576 0.99378 1.22500 1.00343 1.00962 0.95592 1.23174 0.96427 0.91226 0.96750 1.67467 1.02043 1.20136 1.31589 1.23495 1.02134 0.93211 0.97598 0.91404 0.90483 0.88492 0.87399 0.87662 0.91986 0.88714 0.90774 0.88197 0.89558 0.83209 0.90475 0.91641 0.83076 0.82212 0.82281 0.81437 0.88382 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 8.85 127.77 1.13 2.57 16 2 N -0.60 -16.85 3.08 -819.33 -2.53 -19.38 16 3 C 0.53 20.89 7.69 87.66 0.67 21.56 16 4 O -0.57 -27.46 15.35 -3.02 -0.05 -27.51 16 5 C -0.12 -5.13 4.71 71.24 0.34 -4.80 16 6 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 7 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 C 0.01 0.79 5.49 84.86 0.47 1.26 16 10 N -0.91 -56.57 13.22 21.65 0.29 -56.29 16 11 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 15 C 0.11 2.61 4.20 45.58 0.19 2.81 16 16 C -0.14 -2.47 7.20 31.12 0.22 -2.25 16 17 C 0.08 1.17 4.12 45.44 0.19 1.36 16 18 N -0.67 -9.34 6.54 -492.87 -3.22 -12.56 16 19 C 0.11 1.49 5.85 85.56 0.50 1.99 16 20 C 0.11 1.70 6.29 42.55 0.27 1.96 16 21 C -0.17 -1.78 9.72 22.36 0.22 -1.56 16 22 C -0.08 -0.65 10.18 22.47 0.23 -0.42 16 23 C -0.17 -1.55 10.11 22.36 0.23 -1.32 16 24 C 0.08 1.08 11.18 84.67 0.95 2.03 16 25 N -0.50 -9.32 10.27 -183.88 -1.89 -11.21 16 26 C -0.13 -2.36 7.32 31.18 0.23 -2.13 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.54 6.44 -2.38 -0.02 1.53 16 29 H 0.10 1.49 6.34 -2.39 -0.02 1.48 16 30 H 0.11 4.04 7.40 -2.39 -0.02 4.03 16 31 H 0.11 4.01 8.11 -2.39 -0.02 3.99 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.09 2.78 7.24 -2.39 -0.02 2.76 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.63 6.92 -2.39 -0.02 1.61 16 36 H 0.09 1.18 7.88 -2.39 -0.02 1.16 16 37 H 0.35 4.15 8.55 -89.70 -0.77 3.39 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 0.62 8.03 -2.39 -0.02 0.60 16 40 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 42 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16 43 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 44 H 0.10 1.85 6.74 -2.38 -0.02 1.83 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -80.76 386.90 0.17 -80.59 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.23 Total: 18.25 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.47 Total: -8.04 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -7.35 Total: -99.44 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -80.76 0.17 -80.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333037812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.086 kcal (2) G-P(sol) polarization free energy of solvation -80.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds