Wall clock time and date at job start Tue Mar 31 2020 18:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00188 * 2 1 4 4 C 1.38736 * 120.05468 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.06059 * 0.02719 * 5 4 3 7 7 C 1.50698 * 119.94795 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46984 * 89.99926 * 7 6 5 9 9 C 1.42897 * 113.99740 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46848 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46965 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49098 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11565 * 155.35611 * 14 13 11 16 16 O 1.42899 * 113.73966 * 269.25861 * 15 14 13 17 17 C 1.50697 * 113.73728 * 137.95278 * 15 14 13 18 18 H 1.08000 * 120.00521 * 359.97438 * 17 15 14 19 19 C 1.37881 * 119.99910 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99824 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00457 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46931 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47476 * 210.00446 * 21 19 17 24 24 H 1.48504 * 109.46989 * 330.00238 * 21 19 17 25 25 C 1.47576 * 134.49404 * 359.97438 * 13 11 10 26 26 C 1.38271 * 120.10800 * 0.24996 * 6 5 4 27 27 C 1.38145 * 120.05335 * 359.44782 * 26 6 5 28 28 H 1.08996 * 109.47790 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47493 * 300.00465 * 1 2 3 30 30 H 1.09005 * 109.46827 * 59.99865 * 1 2 3 31 31 H 1.08000 * 120.02506 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97382 * 180.02562 * 5 4 3 33 33 H 1.08991 * 109.47059 * 329.99775 * 7 6 5 34 34 H 1.09000 * 109.47232 * 209.99901 * 7 6 5 35 35 H 1.09000 * 109.47427 * 60.00126 * 9 8 7 36 36 H 1.09002 * 109.47365 * 299.99940 * 9 8 7 37 37 H 1.08998 * 109.47574 * 60.00123 * 10 9 8 38 38 H 1.09001 * 109.47249 * 299.99590 * 10 9 8 39 39 H 1.09001 * 113.76908 * 41.05531 * 14 13 11 40 40 H 1.08997 * 113.76763 * 269.65793 * 14 13 11 41 41 H 0.96703 * 113.99221 * 180.02562 * 16 15 14 42 42 H 0.97003 * 120.00094 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.77250 * 90.33955 * 25 13 11 44 44 H 1.09001 * 113.87174 * 318.95113 * 25 13 11 45 45 H 1.07998 * 119.97080 * 179.70965 * 26 6 5 46 46 H 1.08008 * 120.02891 * 180.24927 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3022 3.6757 0.0016 7 6 3.9864 5.0184 0.0028 8 8 4.2031 5.4437 -1.3441 9 6 4.8494 6.7132 -1.4558 10 6 5.0285 7.0660 -2.9338 11 6 5.7107 8.4046 -3.0517 12 8 6.0224 9.0165 -2.0520 13 7 5.9733 8.9223 -4.2680 14 6 6.6063 10.1661 -4.7479 15 6 6.9255 9.3835 -6.0346 16 8 8.1925 8.7232 -6.0069 17 6 6.7007 10.1746 -7.2973 18 1 6.3465 11.1933 -7.2406 19 6 6.9472 9.5979 -8.5252 20 7 7.3780 8.3572 -8.5944 21 14 6.6678 10.5781 -10.0906 22 1 7.9161 11.2953 -10.4549 23 1 6.2876 9.6561 -11.1909 24 1 5.5777 11.5622 -9.8705 25 6 5.7436 8.4731 -5.6548 26 6 1.9213 3.6047 0.0069 27 6 1.2917 2.3751 0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0208 0.3798 0.0005 32 1 5.1346 2.5748 0.0011 33 1 4.9440 4.9376 0.5169 34 1 3.3582 5.7458 0.5169 35 1 5.8250 6.6681 -0.9719 36 1 4.2388 7.4757 -0.9721 37 1 4.0527 7.1113 -3.4174 38 1 5.6390 6.3037 -3.4179 39 1 7.4900 10.4569 -4.1799 40 1 5.9049 10.9873 -4.8957 41 1 8.3969 8.2307 -6.8137 42 1 7.5517 7.9515 -9.4582 43 1 4.7887 8.7970 -6.0691 44 1 5.9378 7.4123 -5.8128 45 1 1.3345 4.5114 0.0121 46 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344391116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:28 Heat of formation + Delta-G solvation = -108.688755 kcal Electronic energy + Delta-G solvation = -27433.093849 eV Core-core repulsion = 23289.634266 eV Total energy + Delta-G solvation = -4143.459583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45277 -39.57792 -38.51814 -37.60462 -36.94914 -33.96303 -32.25372 -32.20403 -31.39176 -30.71151 -28.53754 -27.91923 -25.78985 -25.27216 -25.22522 -22.95677 -22.92563 -21.47678 -19.96442 -18.50216 -18.23836 -17.49505 -16.84870 -16.76710 -16.14864 -16.09261 -15.96062 -15.69719 -15.32527 -14.85132 -14.80680 -14.60651 -14.15400 -14.05485 -13.79271 -13.44156 -13.29038 -12.95752 -12.79161 -12.49076 -12.32986 -12.21621 -11.96171 -11.59179 -11.57029 -11.50187 -11.28525 -11.11036 -11.06765 -11.04960 -11.02216 -10.52748 -10.29774 -9.67234 -9.63769 -9.27718 -9.22389 -8.77992 -8.46866 -8.42715 -7.86469 -6.40833 -4.51391 1.03927 1.08290 2.91460 3.14039 3.15172 3.17378 3.22430 3.25116 3.53237 4.05331 4.17944 4.44656 4.55945 4.70089 4.72124 4.75578 4.83086 4.96572 5.00590 5.05512 5.07895 5.18187 5.22548 5.30788 5.34938 5.42610 5.57269 5.65196 5.74600 5.93003 5.95710 5.96049 5.99871 6.04769 6.17422 6.35822 6.36973 6.44532 6.50756 6.61656 6.67335 7.04365 7.09067 7.14447 7.61845 7.79706 8.46136 8.51896 8.70928 9.19963 9.45195 10.65667 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.001811 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.800218 B =15458.481554 C =16408.902648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.155 4.155 5 C -0.058 4.058 6 C -0.124 4.124 7 C 0.108 3.892 8 O -0.385 6.385 9 C 0.081 3.919 10 C -0.132 4.132 11 C 0.533 3.467 12 O -0.570 6.570 13 N -0.631 5.631 14 C 0.111 3.889 15 C 0.238 3.762 16 O -0.573 6.573 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.076 3.924 26 C -0.058 4.058 27 C -0.212 4.212 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.393 0.607 42 H 0.274 0.726 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -13.599 14.685 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.125 4.125 7 C 0.032 3.968 8 O -0.305 6.305 9 C 0.004 3.996 10 C -0.172 4.172 11 C 0.322 3.678 12 O -0.451 6.451 13 N -0.364 5.364 14 C -0.011 4.011 15 C 0.196 3.804 16 O -0.386 6.386 17 C -0.575 4.575 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.046 4.046 26 C -0.076 4.076 27 C -0.230 4.230 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.249 0.751 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.145 0.855 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.200 -13.553 15.676 24.047 hybrid contribution -0.520 0.359 -1.320 1.463 sum -12.721 -13.194 14.356 23.281 Atomic orbital electron populations 1.23067 0.78312 1.03981 1.01465 1.86069 1.21478 1.27021 1.88640 1.19086 0.92435 0.84129 0.95929 1.20425 0.91357 0.98686 1.06844 1.20912 1.00100 0.90830 0.95731 1.19548 0.93558 0.94315 1.05048 1.21198 0.98813 0.92293 0.84528 1.87904 1.80283 1.36732 1.25569 1.22136 0.97157 0.84351 0.95971 1.21358 1.02732 0.95913 0.97182 1.19904 0.78855 0.86959 0.82084 1.90634 1.55290 1.63317 1.35901 1.50155 1.58164 1.22906 1.05171 1.23476 0.95934 0.87855 0.93787 1.19844 0.81364 0.88115 0.91052 1.86055 1.36079 1.70488 1.45979 1.21509 1.45697 1.00233 0.90064 0.91021 1.25080 0.93417 0.94841 0.99757 1.69314 1.45364 1.12639 1.26528 0.86323 0.78837 0.79725 0.81589 1.20253 1.20917 1.19570 1.24343 1.02214 1.01240 0.76842 1.20865 0.93854 0.97199 0.95680 1.21213 1.00062 0.92250 1.09503 0.88207 0.92628 0.92504 0.85011 0.85011 0.92363 0.92506 0.92385 0.92550 0.88582 0.88329 0.91125 0.89636 0.75108 0.91600 0.89937 0.91209 0.85549 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.99 10.50 -19.42 -0.20 -3.20 16 3 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16 5 C -0.06 -0.58 9.69 -39.61 -0.38 -0.96 16 6 C -0.12 -1.33 5.51 -104.60 -0.58 -1.90 16 7 C 0.11 1.17 6.06 36.00 0.22 1.39 16 8 O -0.39 -5.29 10.33 -35.23 -0.36 -5.66 16 9 C 0.08 1.16 5.23 37.16 0.19 1.36 16 10 C -0.13 -2.10 5.82 -27.88 -0.16 -2.26 16 11 C 0.53 10.65 8.06 -10.98 -0.09 10.56 16 12 O -0.57 -12.80 16.71 5.55 0.09 -12.71 16 13 N -0.63 -13.26 3.61 -178.31 -0.64 -13.90 16 14 C 0.11 2.42 8.22 -2.97 -0.02 2.39 16 15 C 0.24 5.65 1.45 -90.84 -0.13 5.52 16 16 O -0.57 -14.67 13.50 -35.23 -0.48 -15.14 16 17 C -0.54 -13.29 8.62 -34.44 -0.30 -13.59 16 18 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 20 N -0.90 -22.50 11.08 55.43 0.61 -21.88 16 21 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C 0.08 1.62 8.00 -2.98 -0.02 1.59 16 26 C -0.06 -0.57 9.69 -39.60 -0.38 -0.95 16 27 C -0.21 -1.94 9.04 -39.43 -0.36 -2.30 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 41 H 0.39 10.14 6.42 45.56 0.29 10.43 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 43 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 44 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -29.80 391.45 -8.16 -37.96 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.28 Total: 11.64 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.78 Total: 2.76 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.03 Total: -35.78 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.95 Total: -36.71 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.80 -8.16 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344391116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.728 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds