Wall clock time and date at job start Tue Mar 31 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 117.00188 * 2 1 4 4 C 1.38736 * 120.05468 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.06059 * 0.02719 * 5 4 3 7 7 C 1.50698 * 119.94795 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46984 * 89.99926 * 7 6 5 9 9 C 1.42897 * 113.99740 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46848 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46965 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00171 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99842 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49098 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11565 * 155.35611 * 14 13 11 16 16 O 1.42899 * 113.73966 * 269.25861 * 15 14 13 17 17 C 1.50697 * 113.73728 * 137.95278 * 15 14 13 18 18 H 1.08000 * 120.00521 * 359.97438 * 17 15 14 19 19 C 1.37881 * 119.99910 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99824 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00457 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46931 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47476 * 210.00446 * 21 19 17 24 24 H 1.48504 * 109.46989 * 330.00238 * 21 19 17 25 25 C 1.47576 * 134.49404 * 359.97438 * 13 11 10 26 26 C 1.38271 * 120.10800 * 0.24996 * 6 5 4 27 27 C 1.38145 * 120.05335 * 359.44782 * 26 6 5 28 28 H 1.08996 * 109.47790 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47493 * 300.00465 * 1 2 3 30 30 H 1.09005 * 109.46827 * 59.99865 * 1 2 3 31 31 H 1.08000 * 120.02506 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97382 * 180.02562 * 5 4 3 33 33 H 1.08991 * 109.47059 * 329.99775 * 7 6 5 34 34 H 1.09000 * 109.47232 * 209.99901 * 7 6 5 35 35 H 1.09000 * 109.47427 * 60.00126 * 9 8 7 36 36 H 1.09002 * 109.47365 * 299.99940 * 9 8 7 37 37 H 1.08998 * 109.47574 * 60.00123 * 10 9 8 38 38 H 1.09001 * 109.47249 * 299.99590 * 10 9 8 39 39 H 1.09001 * 113.76908 * 41.05531 * 14 13 11 40 40 H 1.08997 * 113.76763 * 269.65793 * 14 13 11 41 41 H 0.96703 * 113.99221 * 180.02562 * 16 15 14 42 42 H 0.97003 * 120.00094 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.77250 * 90.33955 * 25 13 11 44 44 H 1.09001 * 113.87174 * 318.95113 * 25 13 11 45 45 H 1.07998 * 119.97080 * 179.70965 * 26 6 5 46 46 H 1.08008 * 120.02891 * 180.24927 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3022 3.6757 0.0016 7 6 3.9864 5.0184 0.0028 8 8 4.2031 5.4437 -1.3441 9 6 4.8494 6.7132 -1.4558 10 6 5.0285 7.0660 -2.9338 11 6 5.7107 8.4046 -3.0517 12 8 6.0224 9.0165 -2.0520 13 7 5.9733 8.9223 -4.2680 14 6 6.6063 10.1661 -4.7479 15 6 6.9255 9.3835 -6.0346 16 8 8.1925 8.7232 -6.0069 17 6 6.7007 10.1746 -7.2973 18 1 6.3465 11.1933 -7.2406 19 6 6.9472 9.5979 -8.5252 20 7 7.3780 8.3572 -8.5944 21 14 6.6678 10.5781 -10.0906 22 1 7.9161 11.2953 -10.4549 23 1 6.2876 9.6561 -11.1909 24 1 5.5777 11.5622 -9.8705 25 6 5.7436 8.4731 -5.6548 26 6 1.9213 3.6047 0.0069 27 6 1.2917 2.3751 0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0208 0.3798 0.0005 32 1 5.1346 2.5748 0.0011 33 1 4.9440 4.9376 0.5169 34 1 3.3582 5.7458 0.5169 35 1 5.8250 6.6681 -0.9719 36 1 4.2388 7.4757 -0.9721 37 1 4.0527 7.1113 -3.4174 38 1 5.6390 6.3037 -3.4179 39 1 7.4900 10.4569 -4.1799 40 1 5.9049 10.9873 -4.8957 41 1 8.3969 8.2307 -6.8137 42 1 7.5517 7.9515 -9.4582 43 1 4.7887 8.7970 -6.0691 44 1 5.9378 7.4123 -5.8128 45 1 1.3345 4.5114 0.0121 46 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344391116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:27 Heat of formation + Delta-G solvation = -128.051929 kcal Electronic energy + Delta-G solvation = -27433.933499 eV Core-core repulsion = 23289.634266 eV Total energy + Delta-G solvation = -4144.299234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25039 -41.11441 -39.54942 -38.98571 -37.96017 -35.82291 -34.12172 -33.32578 -32.12647 -31.70566 -30.14969 -28.49476 -27.30853 -26.99850 -26.23096 -24.23580 -23.64409 -22.22047 -21.67420 -19.91086 -19.27237 -19.12884 -18.25893 -17.60191 -17.41338 -17.08192 -17.02590 -16.76812 -16.63799 -16.30241 -16.11107 -15.89138 -15.43329 -15.08861 -14.77131 -14.55042 -14.36097 -14.25542 -14.08052 -13.81838 -13.57183 -13.51131 -13.40736 -12.84718 -12.81774 -12.78479 -12.53854 -12.38358 -12.25456 -12.21740 -12.18107 -11.87476 -11.75133 -11.41815 -10.96908 -10.64628 -10.63361 -10.24996 -9.99207 -9.58950 -9.18642 -8.26144 -6.43197 0.29170 0.36473 1.47406 1.50843 1.58185 1.60172 1.82508 2.34990 2.40933 2.53080 2.95529 3.03127 3.57062 3.77631 3.78741 3.84684 3.93084 3.99192 4.15201 4.17054 4.22287 4.33549 4.38182 4.38839 4.41630 4.48980 4.51113 4.59307 4.60789 4.72160 4.73935 4.76276 4.79183 4.82883 4.92534 4.96748 5.05615 5.23720 5.25585 5.33427 5.61836 5.73769 5.75674 5.92460 6.14424 6.40970 6.62560 6.82489 7.08850 7.30609 7.47800 8.79646 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.001811 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.800218 B =15458.481554 C =16408.902648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.120 3.880 4 C -0.168 4.168 5 C -0.065 4.065 6 C -0.142 4.142 7 C 0.104 3.896 8 O -0.397 6.397 9 C 0.089 3.911 10 C -0.123 4.123 11 C 0.529 3.471 12 O -0.597 6.597 13 N -0.634 5.634 14 C 0.111 3.889 15 C 0.216 3.784 16 O -0.588 6.588 17 C -0.555 4.555 18 H 0.073 0.927 19 C 0.032 3.968 20 N -0.917 5.917 21 Si 0.969 3.031 22 H -0.279 1.279 23 H -0.281 1.281 24 H -0.266 1.266 25 C 0.091 3.909 26 C -0.065 4.065 27 C -0.214 4.214 28 H 0.119 0.881 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.389 0.611 42 H 0.276 0.724 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.141 0.859 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 -13.944 14.625 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.187 4.187 5 C -0.083 4.083 6 C -0.142 4.142 7 C 0.028 3.972 8 O -0.317 6.317 9 C 0.012 3.988 10 C -0.163 4.163 11 C 0.320 3.680 12 O -0.480 6.480 13 N -0.367 5.367 14 C -0.011 4.011 15 C 0.175 3.825 16 O -0.400 6.400 17 C -0.593 4.593 18 H 0.091 0.909 19 C -0.169 4.169 20 N -0.557 5.557 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.031 4.031 26 C -0.083 4.083 27 C -0.232 4.232 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.158 0.842 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.895 -13.909 15.632 25.117 hybrid contribution -0.015 0.409 -1.250 1.316 sum -13.909 -13.500 14.381 24.135 Atomic orbital electron populations 1.23353 0.76409 1.05627 1.02295 1.86049 1.23537 1.26844 1.88523 1.19295 0.92730 0.84767 0.95795 1.20633 0.91855 0.99063 1.07120 1.21088 1.00733 0.90857 0.95652 1.19661 0.94143 0.94253 1.06129 1.21372 0.99694 0.92777 0.83318 1.87875 1.80166 1.36140 1.27510 1.21959 0.97098 0.84971 0.94737 1.21313 1.03011 0.93287 0.98644 1.20581 0.78288 0.87975 0.81156 1.90617 1.56405 1.64377 1.36582 1.50189 1.58320 1.22654 1.05577 1.23475 0.96158 0.88663 0.92818 1.20149 0.81426 0.89176 0.91755 1.86041 1.37518 1.70700 1.45778 1.21735 1.46175 1.00538 0.90821 0.90861 1.25756 0.93168 0.95662 1.02271 1.69377 1.45608 1.13567 1.27182 0.85384 0.78534 0.78448 0.78236 1.20532 1.20659 1.18998 1.24142 1.01617 1.00652 0.76718 1.21107 0.93769 0.98064 0.95328 1.21462 1.01223 0.91731 1.08814 0.86305 0.91494 0.91897 0.84207 0.84092 0.91487 0.91172 0.92953 0.92303 0.86893 0.87960 0.92250 0.87829 0.75618 0.91408 0.88669 0.91274 0.84164 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.94 10.50 -92.40 -0.97 -6.91 16 3 C 0.12 2.30 6.69 22.51 0.15 2.45 16 4 C -0.17 -3.26 9.99 22.37 0.22 -3.03 16 5 C -0.07 -1.27 9.69 22.25 0.22 -1.06 16 6 C -0.14 -2.87 5.51 -19.85 -0.11 -2.98 16 7 C 0.10 2.12 6.06 71.24 0.43 2.55 16 8 O -0.40 -10.34 10.33 -148.98 -1.54 -11.88 16 9 C 0.09 2.46 5.23 71.98 0.38 2.84 16 10 C -0.12 -3.74 5.82 29.85 0.17 -3.56 16 11 C 0.53 20.69 8.06 87.66 0.71 21.40 16 12 O -0.60 -26.52 16.71 -3.04 -0.05 -26.57 16 13 N -0.63 -26.18 3.61 -840.27 -3.03 -29.21 16 14 C 0.11 4.79 8.22 86.48 0.71 5.50 16 15 C 0.22 10.21 1.45 -10.88 -0.02 10.20 16 16 O -0.59 -30.38 13.50 -148.98 -2.01 -32.39 16 17 C -0.55 -27.14 8.62 25.60 0.22 -26.92 16 18 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 19 C 0.03 1.55 5.39 84.66 0.46 2.00 16 20 N -0.92 -45.57 11.08 21.45 0.24 -45.33 16 21 Si 0.97 38.77 29.54 68.60 2.03 40.80 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 25 C 0.09 3.78 8.00 86.48 0.69 4.47 16 26 C -0.06 -1.17 9.69 22.26 0.22 -0.96 16 27 C -0.21 -3.61 9.04 22.37 0.20 -3.40 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.06 0.50 7.66 -2.38 -0.02 0.48 16 31 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 32 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.07 1.22 8.08 -2.39 -0.02 1.21 16 34 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 35 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.10 4.03 8.09 -2.39 -0.02 4.01 16 41 H 0.39 20.33 6.42 -74.05 -0.48 19.86 16 42 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 43 H 0.10 3.68 8.09 -2.39 -0.02 3.66 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 Total: -1.00 -62.11 391.45 0.94 -61.17 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: 0.51 Total: 39.57 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.76 Total: 10.76 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.79 Total: -74.54 kcal Atomic # 8 Polarization: -73.18 SS G_CDS: -4.57 Total: -77.75 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -62.11 0.94 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344391116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.885 kcal (2) G-P(sol) polarization free energy of solvation -62.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds