Wall clock time and date at job start Tue Mar 31 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34748 * 117.00609 * 2 1 4 4 O 1.21518 * 119.99645 * 359.97438 * 3 2 1 5 5 C 1.47387 * 120.00356 * 179.97438 * 3 2 1 6 6 C 1.39767 * 120.19847 * 0.02562 * 5 3 2 7 7 C 1.37769 * 119.90417 * 179.72287 * 6 5 3 8 8 C 1.38566 * 120.30832 * 0.51014 * 7 6 5 9 9 C 1.50694 * 119.80116 * 179.76044 * 8 7 6 10 10 N 1.46499 * 109.47550 * 269.72911 * 9 8 7 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 C 1.52996 * 109.47159 * 179.72352 * 13 11 10 15 15 C 1.52994 * 109.47118 * 179.97438 * 14 13 11 16 16 C 1.50708 * 109.47076 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99591 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99904 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99726 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47174 * 90.00163 * 20 18 16 22 22 H 1.48503 * 109.46751 * 209.99925 * 20 18 16 23 23 H 1.48499 * 109.47051 * 329.99766 * 20 18 16 24 24 C 1.38053 * 120.39826 * 359.48832 * 8 7 6 25 25 C 1.38708 * 120.09196 * 0.25121 * 24 8 7 26 26 O 1.35641 * 120.15275 * 179.97438 * 25 24 8 27 27 C 1.42901 * 117.00257 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47068 * 300.01022 * 1 2 3 30 30 H 1.09002 * 109.46372 * 59.99879 * 1 2 3 31 31 H 1.07998 * 120.04869 * 359.97438 * 6 5 3 32 32 H 1.07994 * 119.84572 * 180.27285 * 7 6 5 33 33 H 1.08998 * 109.47333 * 149.72505 * 9 8 7 34 34 H 1.09002 * 109.47271 * 29.72939 * 9 8 7 35 35 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 36 36 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 37 37 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 38 38 H 1.09004 * 109.47066 * 299.99797 * 14 13 11 39 39 H 1.09000 * 109.47234 * 59.99288 * 14 13 11 40 40 H 1.08998 * 109.46965 * 299.99512 * 15 14 13 41 41 H 1.09003 * 109.47184 * 60.00331 * 15 14 13 42 42 H 0.96996 * 119.99509 * 179.97438 * 19 18 16 43 43 H 1.08000 * 119.95208 * 180.23369 * 24 8 7 44 44 H 1.09007 * 109.46720 * 299.99755 * 27 26 25 45 45 H 1.09000 * 109.47051 * 59.99224 * 27 26 25 46 46 H 1.08996 * 109.47060 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2005 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2776 0.0006 6 6 4.3010 0.1080 0.0006 7 6 5.6764 0.1871 -0.0047 8 6 6.3059 1.4216 0.0007 9 6 7.8110 1.4947 0.0003 10 7 8.2992 1.5186 1.3814 11 6 9.6228 1.5835 1.6273 12 8 10.4097 1.6217 0.7052 13 6 10.1252 1.6019 3.0480 14 6 11.6536 1.6712 3.0476 15 6 12.1636 1.6905 4.4899 16 6 13.6691 1.7581 4.4895 17 1 14.2081 1.7851 3.5540 18 6 14.3583 1.7866 5.6833 19 7 13.7017 1.7552 6.8224 20 14 16.2244 1.8712 5.6827 21 1 16.6555 3.2922 5.6859 22 1 16.7510 1.1915 6.8935 23 1 16.7500 1.1970 4.4685 24 6 5.5624 2.5848 0.0007 25 6 4.1766 2.5245 0.0006 26 8 3.4450 3.6667 0.0012 27 6 4.1671 4.8998 0.0013 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 3.8148 -0.8563 0.0006 32 1 6.2667 -0.7172 -0.0091 33 1 8.1306 2.4012 -0.5137 34 1 8.2171 0.6234 -0.5135 35 1 7.6697 1.4885 2.1188 36 1 9.7221 2.4729 3.5647 37 1 9.8027 0.6948 3.5591 38 1 12.0566 0.8001 2.5309 39 1 11.9760 2.5783 2.5363 40 1 11.7606 2.5617 5.0061 41 1 11.8412 0.7835 5.0014 42 1 14.1866 1.7749 7.6623 43 1 6.0605 3.5431 0.0011 44 1 4.7944 4.9534 0.8912 45 1 4.7939 4.9538 -0.8888 46 1 3.4639 5.7326 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356367404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:53 Heat of formation + Delta-G solvation = -148.497423 kcal Electronic energy + Delta-G solvation = -27321.318748 eV Core-core repulsion = 23176.132932 eV Total energy + Delta-G solvation = -4145.185817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23912 -40.08087 -39.49873 -38.08169 -36.65221 -35.06166 -34.16393 -32.34904 -31.87920 -30.72406 -28.74208 -28.24611 -27.60876 -26.39461 -23.91185 -22.88249 -22.72422 -21.27343 -20.69918 -19.82251 -18.69202 -17.85397 -17.36708 -16.89761 -16.76385 -16.33566 -16.19249 -16.06037 -15.82093 -15.49432 -15.10995 -14.69269 -14.42940 -14.28151 -13.78567 -13.73810 -13.62253 -13.41953 -12.89873 -12.71337 -12.56606 -12.41122 -12.26870 -12.00155 -11.85221 -11.66114 -11.55591 -11.33883 -11.13965 -10.80882 -10.72536 -10.61736 -10.53742 -9.87840 -9.68772 -9.52663 -9.25831 -9.13509 -9.01950 -8.77345 -8.32142 -5.97806 -3.99224 0.15453 0.87936 2.12440 2.30565 2.72766 2.86476 3.09059 3.34694 3.40551 3.45042 3.50210 4.01764 4.24239 4.40536 4.49208 4.50316 4.70874 4.72423 4.73897 4.75720 4.80829 4.96318 5.06225 5.10859 5.13778 5.18154 5.28106 5.38317 5.50932 5.56862 5.68953 5.70079 5.71077 5.99386 6.00732 6.13426 6.23070 6.34530 6.71624 6.81307 6.92072 7.15441 7.45211 7.51155 7.70733 7.83306 8.02812 8.37954 8.46772 9.07878 9.64768 11.13646 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.001667 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.305958 B =16796.453368 C =16997.542287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.489 6.489 5 C -0.162 4.162 6 C -0.024 4.024 7 C -0.154 4.154 8 C -0.025 4.025 9 C 0.154 3.846 10 N -0.737 5.737 11 C 0.514 3.486 12 O -0.536 6.536 13 C -0.138 4.138 14 C -0.095 4.095 15 C 0.020 3.980 16 C -0.518 4.518 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.205 4.205 25 C 0.191 3.809 26 O -0.285 6.285 27 C 0.019 3.981 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.142 0.858 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.282 -1.471 -15.410 32.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.352 3.648 4 O -0.376 6.376 5 C -0.165 4.165 6 C -0.042 4.042 7 C -0.172 4.172 8 C -0.026 4.026 9 C 0.030 3.970 10 N -0.391 5.391 11 C 0.302 3.698 12 O -0.412 6.412 13 C -0.178 4.178 14 C -0.133 4.133 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.224 4.224 25 C 0.143 3.857 26 O -0.196 6.196 27 C -0.076 4.076 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.160 0.840 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.109 -1.095 -15.906 32.316 hybrid contribution 0.641 0.267 0.463 0.834 sum -27.468 -0.828 -15.443 31.523 Atomic orbital electron populations 1.23263 0.75906 1.03726 1.02644 1.86529 1.23584 1.32738 1.84779 1.20862 0.88725 0.81600 0.73570 1.90894 1.66382 1.35652 1.44720 1.18446 0.89644 0.91980 1.16387 1.21334 0.93478 0.97281 0.92083 1.21043 0.94215 0.97697 1.04266 1.20014 0.95470 0.92771 0.94300 1.20234 0.87903 1.03685 0.85161 1.46158 1.07938 1.77564 1.07455 1.21320 0.81046 0.74531 0.92882 1.90688 1.55147 1.48546 1.46771 1.21853 1.00780 1.03861 0.91281 1.21451 0.89315 1.01682 1.00865 1.19140 0.95824 0.97151 0.89634 1.21274 0.91994 1.50054 0.92334 0.92570 1.25022 0.98440 0.95395 0.95666 1.69961 1.35396 1.51145 0.97202 0.86590 0.85818 0.78115 0.77476 1.20696 1.21268 1.19838 1.21176 0.91716 1.00048 1.09487 1.18968 0.89685 0.85907 0.91110 1.86325 1.34416 1.12395 1.86450 1.23245 0.98439 0.84116 1.01798 0.87950 0.91823 0.91874 0.83521 0.84422 0.90418 0.90049 0.76424 0.89321 0.89235 0.92662 0.92709 0.96603 0.96567 0.93076 0.84043 0.92047 0.92194 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.36 -3.12 9.82 -40.62 -0.40 -3.52 16 3 C 0.51 5.48 7.89 34.45 0.27 5.75 16 4 O -0.49 -6.55 14.95 -26.60 -0.40 -6.95 16 5 C -0.16 -1.56 5.88 -104.87 -0.62 -2.18 16 6 C -0.02 -0.17 9.61 -39.18 -0.38 -0.55 16 7 C -0.15 -1.09 9.67 -39.63 -0.38 -1.47 16 8 C -0.02 -0.20 5.25 -104.57 -0.55 -0.74 16 9 C 0.15 1.43 5.79 -5.20 -0.03 1.40 16 10 N -0.74 -7.84 5.55 -61.47 -0.34 -8.18 16 11 C 0.51 7.74 7.83 -10.98 -0.09 7.65 16 12 O -0.54 -10.22 15.98 5.55 0.09 -10.13 16 13 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 14 C -0.10 -2.01 4.44 -26.74 -0.12 -2.13 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.21 -1.65 8.67 -39.48 -0.34 -1.99 16 25 C 0.19 1.84 6.70 -38.67 -0.26 1.58 16 26 O -0.29 -2.93 8.57 -40.51 -0.35 -3.27 16 27 C 0.02 0.12 9.81 101.05 0.99 1.11 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.15 0.81 7.61 -52.49 -0.40 0.41 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.40 3.39 8.46 -40.82 -0.35 3.04 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 44 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 45 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -36.50 395.66 -7.76 -44.25 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.90 Total: -2.85 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.14 Total: -5.99 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.40 Total: -34.41 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.05 Total: -23.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.50 -7.76 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356367404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.247 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds