Wall clock time and date at job start Tue Mar 31 2020 19:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00332 * 2 1 4 4 H 1.08998 * 109.51985 * 30.12942 * 3 2 1 5 5 C 1.53093 * 109.52274 * 270.00076 * 3 2 1 6 6 O 1.42905 * 109.41913 * 297.64313 * 5 3 2 7 7 C 1.42912 * 114.09337 * 298.84294 * 6 5 3 8 8 C 1.53089 * 109.41556 * 61.15470 * 7 6 5 9 9 C 1.53172 * 109.16478 * 302.39044 * 8 7 6 10 10 H 1.09000 * 109.61974 * 297.07010 * 9 8 7 11 11 C 1.53005 * 109.54229 * 176.84601 * 9 8 7 12 12 N 1.46499 * 109.46787 * 65.44633 * 11 9 8 13 13 C 1.34782 * 119.99963 * 179.97438 * 12 11 9 14 14 O 1.21588 * 119.99710 * 0.02562 * 13 12 11 15 15 C 1.47532 * 119.99932 * 179.97438 * 13 12 11 16 16 C 1.39664 * 120.20020 * 359.72717 * 15 13 12 17 17 C 1.37821 * 119.92121 * 179.76730 * 16 15 13 18 18 C 1.38575 * 120.32370 * 0.50842 * 17 16 15 19 19 C 1.38029 * 120.40169 * 359.74694 * 18 17 16 20 20 C 1.38833 * 120.07006 * 359.97438 * 19 18 17 21 21 O 1.35521 * 120.16343 * 180.02562 * 20 19 18 22 22 C 1.34812 * 116.99590 * 354.40473 * 21 20 19 23 23 H 1.07998 * 120.00475 * 5.05633 * 22 21 20 24 24 C 1.38701 * 119.99674 * 185.06723 * 22 21 20 25 25 N 1.31510 * 120.00345 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99768 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47140 * 59.99639 * 26 24 22 28 28 H 1.48499 * 109.46941 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47532 * 299.99798 * 26 24 22 30 30 H 1.09004 * 109.46307 * 299.99891 * 1 2 3 31 31 H 1.09000 * 109.46904 * 59.99401 * 1 2 3 32 32 H 1.08998 * 109.47678 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47990 * 57.62592 * 5 3 2 34 34 H 1.09000 * 109.47762 * 177.65428 * 5 3 2 35 35 H 1.08998 * 109.47476 * 301.17332 * 7 6 5 36 36 H 1.08999 * 109.48571 * 181.15019 * 7 6 5 37 37 H 1.09000 * 109.51902 * 182.47960 * 8 7 6 38 38 H 1.08996 * 109.51880 * 62.29886 * 8 7 6 39 39 H 1.09003 * 109.47221 * 185.44492 * 11 9 8 40 40 H 1.08996 * 109.47471 * 305.44604 * 11 9 8 41 41 H 0.96998 * 120.00390 * 359.97438 * 12 11 9 42 42 H 1.07998 * 120.03796 * 0.02562 * 16 15 13 43 43 H 1.08000 * 119.83970 * 180.23282 * 17 16 15 44 44 H 1.08004 * 119.80175 * 179.76833 * 18 17 16 45 45 H 1.07993 * 119.96549 * 180.02562 * 19 18 17 46 46 H 0.96997 * 120.00843 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3467 1.9996 0.5157 5 6 2.2184 1.7728 -1.4429 6 8 3.1339 0.8938 -2.0997 7 6 4.4315 0.8507 -1.5026 8 6 4.3124 0.3463 -0.0621 9 6 3.3642 1.2643 0.7153 10 1 3.7833 2.2695 0.7606 11 6 3.1770 0.7233 2.1343 12 7 4.4496 0.7962 2.8564 13 6 4.5250 0.3720 4.1335 14 8 3.5370 -0.0716 4.6860 15 6 5.8067 0.4449 4.8605 16 6 6.9458 0.9474 4.2276 17 6 8.1390 1.0173 4.9137 18 6 8.2177 0.5814 6.2268 19 6 7.1015 0.0775 6.8635 20 6 5.8898 0.0048 6.1899 21 8 4.7926 -0.4891 6.8134 22 6 4.9687 -1.0007 8.0482 23 1 5.9330 -0.9304 8.5293 24 6 3.9115 -1.6174 8.7006 25 7 2.7371 -1.7027 8.1149 26 14 4.1557 -2.3269 10.4113 27 1 4.5695 -1.2455 11.3412 28 1 2.8823 -2.9261 10.8850 29 1 5.2094 -3.3724 10.3679 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.2640 1.7631 -1.9694 34 1 2.6230 2.7849 -1.4423 35 1 4.8651 1.8507 -1.5028 36 1 5.0716 0.1768 -2.0720 37 1 5.2952 0.3544 0.4092 38 1 3.9165 -0.6693 -0.0634 39 1 2.4289 1.3209 2.6552 40 1 2.8450 -0.3137 2.0870 41 1 5.2379 1.1498 2.4155 42 1 6.8907 1.2847 3.2031 43 1 9.0182 1.4097 4.4242 44 1 9.1580 0.6366 6.7553 45 1 7.1707 -0.2599 7.8871 46 1 1.9976 -2.1337 8.5712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361469584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:26 Heat of formation + Delta-G solvation = -123.259324 kcal Electronic energy + Delta-G solvation = -29236.911390 eV Core-core repulsion = 25092.819980 eV Total energy + Delta-G solvation = -4144.091411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25308 -39.46445 -38.00701 -37.13630 -36.32534 -35.21539 -32.55353 -32.30857 -30.77258 -30.44413 -28.91504 -27.27198 -26.72968 -25.35714 -23.66742 -23.50293 -22.32581 -21.25913 -20.25671 -19.78972 -18.04051 -17.65208 -16.85228 -16.62515 -16.16583 -16.00447 -15.61564 -15.48339 -14.89714 -14.62982 -14.59484 -14.15188 -14.14291 -14.12743 -13.72657 -13.71328 -13.31107 -12.99483 -12.62866 -12.60271 -12.48351 -12.26955 -11.88890 -11.70452 -11.51229 -11.30790 -11.14514 -11.09777 -10.91167 -10.87760 -10.78052 -10.55885 -10.46940 -10.24658 -9.56269 -9.32175 -8.86662 -8.81303 -8.50250 -8.25486 -7.29849 -6.42935 -4.03145 1.73153 2.32751 3.12316 3.14550 3.16953 3.43690 3.68963 3.78477 3.79468 3.94614 4.44917 4.50844 4.62164 4.67268 4.70095 5.00920 5.05314 5.07749 5.15939 5.18667 5.19275 5.23601 5.29225 5.39463 5.43957 5.51087 5.55029 5.60963 5.63754 5.74026 5.77573 5.96623 6.02408 6.12621 6.16312 6.30141 6.57051 6.70257 6.85536 6.91962 6.99084 7.06748 7.12330 7.24862 7.30021 7.70324 7.93352 8.15546 8.96373 9.14033 9.68991 10.70752 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.002987 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.471433 B = 9370.757094 C =11159.847400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.061 3.939 4 H 0.073 0.927 5 C 0.043 3.957 6 O -0.373 6.373 7 C 0.061 3.939 8 C -0.148 4.148 9 C -0.097 4.097 10 H 0.087 0.913 11 C 0.136 3.864 12 N -0.744 5.744 13 C 0.553 3.447 14 O -0.500 6.500 15 C -0.227 4.227 16 C -0.039 4.039 17 C -0.231 4.231 18 C -0.051 4.051 19 C -0.238 4.238 20 C 0.189 3.811 21 O -0.123 6.123 22 C -0.405 4.405 23 H 0.093 0.907 24 C 0.045 3.955 25 N -0.832 5.832 26 Si 0.941 3.059 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.390 0.610 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 7.785 -16.810 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.002 3.998 4 H 0.091 0.909 5 C -0.035 4.035 6 O -0.291 6.291 7 C -0.016 4.016 8 C -0.186 4.186 9 C -0.116 4.116 10 H 0.105 0.895 11 C 0.012 3.988 12 N -0.400 5.400 13 C 0.343 3.657 14 O -0.374 6.374 15 C -0.231 4.231 16 C -0.057 4.057 17 C -0.250 4.250 18 C -0.070 4.070 19 C -0.257 4.257 20 C 0.129 3.871 21 O -0.021 6.021 22 C -0.481 4.481 23 H 0.111 0.889 24 C -0.163 4.163 25 N -0.464 5.464 26 Si 0.765 3.235 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.224 0.776 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.074 7.028 -16.537 18.000 hybrid contribution 0.492 0.298 0.925 1.089 sum 1.566 7.326 -15.612 17.316 Atomic orbital electron populations 1.22820 0.81181 1.03061 0.99664 1.88006 1.19378 1.26194 1.94851 1.22730 0.94921 0.86321 0.95792 0.90909 1.23055 0.94355 0.92956 0.93114 1.87959 1.22101 1.65589 1.53475 1.22617 0.84755 1.00461 0.93771 1.22199 0.99863 1.01201 0.95289 1.21545 0.94739 1.00280 0.94991 0.89486 1.21100 0.86483 1.02196 0.89064 1.45890 1.11948 1.68320 1.13858 1.18221 0.88863 0.77979 0.80668 1.90950 1.36829 1.43054 1.66607 1.18868 0.94154 1.16452 0.93671 1.20737 0.91901 0.95500 0.97609 1.20451 0.97457 1.11119 0.96017 1.20893 0.97077 0.94681 0.94335 1.21157 0.92981 1.09734 1.01867 1.19279 0.87073 0.90561 0.90151 1.84176 1.27081 1.62076 1.28813 1.21451 0.99014 1.37286 0.90310 0.88935 1.25379 0.94500 0.96437 0.99961 1.70114 1.00918 1.38012 1.37310 0.85803 0.78207 0.79298 0.80237 1.19389 1.20158 1.19358 0.93829 0.94357 0.89463 0.88822 0.92320 0.93370 0.88748 0.90662 0.89708 0.92151 0.90775 0.77576 0.87172 0.87314 0.87210 0.85100 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.37 -4.49 9.08 -42.66 -0.39 -4.87 16 3 C 0.06 0.62 2.43 -26.59 -0.06 0.55 16 4 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 5 C 0.04 0.38 6.48 37.21 0.24 0.62 16 6 O -0.37 -4.12 10.70 -42.66 -0.46 -4.57 16 7 C 0.06 0.55 6.84 37.20 0.25 0.80 16 8 C -0.15 -1.52 5.10 -26.60 -0.14 -1.65 16 9 C -0.10 -1.02 2.15 -90.43 -0.19 -1.22 16 10 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 11 C 0.14 2.01 4.82 -4.04 -0.02 1.99 16 12 N -0.74 -12.01 5.27 -61.35 -0.32 -12.33 16 13 C 0.55 12.30 7.76 -12.47 -0.10 12.20 16 14 O -0.50 -13.94 15.17 -16.57 -0.25 -14.19 16 15 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 16 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 17 C -0.23 -3.78 10.02 -39.61 -0.40 -4.17 16 18 C -0.05 -0.91 10.03 -39.53 -0.40 -1.30 16 19 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 20 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 21 O -0.12 -3.68 7.84 -21.05 -0.16 -3.84 16 22 C -0.40 -11.55 9.49 30.90 0.29 -11.25 16 23 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 24 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 25 N -0.83 -25.28 13.67 55.48 0.76 -24.52 16 26 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 29 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 30 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.04 0.29 7.83 -51.93 -0.41 -0.11 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.73 7.83 -51.93 -0.41 0.32 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.70 7.31 -51.93 -0.38 0.32 16 38 H 0.08 1.06 7.83 -51.93 -0.41 0.66 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 41 H 0.39 4.95 5.74 -40.82 -0.23 4.72 16 42 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 43 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 45 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -36.31 376.00 -7.79 -44.11 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.48 Total: 7.47 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.13 Total: -8.52 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.44 Total: -36.85 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.26 Total: -27.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.31 -7.79 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361469584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.151 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds