Wall clock time and date at job start Tue Mar 31 2020 19:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00113 * 2 1 4 4 H 1.09000 * 109.57350 * 29.85104 * 3 2 1 5 5 C 1.53102 * 109.60026 * 269.72589 * 3 2 1 6 6 O 1.42902 * 109.48512 * 182.57586 * 5 3 2 7 7 C 1.42908 * 114.09659 * 61.11637 * 6 5 3 8 8 C 1.53087 * 109.41111 * 298.83981 * 7 6 5 9 9 C 1.53169 * 109.16804 * 57.61112 * 8 7 6 10 10 H 1.08998 * 109.54682 * 62.97102 * 9 8 7 11 11 C 1.53000 * 109.54678 * 183.15429 * 9 8 7 12 12 N 1.46500 * 109.46945 * 294.82032 * 11 9 8 13 13 C 1.34779 * 120.00399 * 180.02562 * 12 11 9 14 14 O 1.21588 * 119.99313 * 0.02562 * 13 12 11 15 15 C 1.47526 * 120.00126 * 179.97438 * 13 12 11 16 16 C 1.39664 * 120.20132 * 0.02562 * 15 13 12 17 17 C 1.37827 * 119.92349 * 179.72060 * 16 15 13 18 18 C 1.38572 * 120.32330 * 0.02562 * 17 16 15 19 19 C 1.38022 * 120.39963 * 0.02562 * 18 17 16 20 20 C 1.38835 * 120.07340 * 359.95700 * 19 18 17 21 21 O 1.35522 * 120.15960 * 180.02562 * 20 19 18 22 22 C 1.34817 * 117.00142 * 354.39545 * 21 20 19 23 23 H 1.07996 * 120.00199 * 5.07266 * 22 21 20 24 24 C 1.38699 * 119.99816 * 185.06119 * 22 21 20 25 25 N 1.31522 * 120.00229 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99739 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47019 * 60.00581 * 26 24 22 28 28 H 1.48501 * 109.46859 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47044 * 300.00612 * 26 24 22 30 30 H 1.09002 * 109.47025 * 299.99323 * 1 2 3 31 31 H 1.09002 * 109.47290 * 59.99349 * 1 2 3 32 32 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47930 * 62.55381 * 5 3 2 34 34 H 1.09003 * 109.41993 * 302.56681 * 5 3 2 35 35 H 1.09003 * 109.47843 * 178.85861 * 7 6 5 36 36 H 1.08999 * 109.48098 * 58.81872 * 7 6 5 37 37 H 1.09007 * 109.52372 * 297.70156 * 8 7 6 38 38 H 1.09005 * 109.52420 * 177.51547 * 8 7 6 39 39 H 1.09001 * 109.47429 * 174.82472 * 11 9 8 40 40 H 1.08990 * 109.47232 * 54.82017 * 11 9 8 41 41 H 0.97006 * 120.00203 * 359.97438 * 12 11 9 42 42 H 1.08002 * 120.03755 * 359.74636 * 16 15 13 43 43 H 1.07999 * 119.83746 * 179.97438 * 17 16 15 44 44 H 1.07997 * 119.80157 * 179.97438 * 18 17 16 45 45 H 1.08004 * 119.96331 * 179.97438 * 19 18 17 46 46 H 0.97002 * 119.99564 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5112 5 6 2.2254 1.7718 -1.4423 6 8 2.8615 3.0515 -1.4396 7 6 4.1493 3.0617 -0.8201 8 6 4.0111 2.6492 0.6476 9 6 3.3607 1.2645 0.7218 10 1 4.0086 0.5311 0.2418 11 6 3.1466 0.8773 2.1865 12 7 4.4457 0.7262 2.8465 13 6 4.5042 0.3854 4.1492 14 8 3.4787 0.2031 4.7764 15 6 5.8124 0.2327 4.8137 16 6 6.9930 0.4407 4.0970 17 6 8.2120 0.3021 4.7250 18 6 8.2732 -0.0436 6.0656 19 6 7.1149 -0.2533 6.7863 20 6 5.8781 -0.1178 6.1703 21 8 4.7397 -0.3228 6.8765 22 6 4.8759 -0.7689 8.1414 23 1 5.8596 -0.8686 8.5758 24 6 3.7527 -1.0998 8.8848 25 7 2.5547 -0.9787 8.3557 26 14 3.9415 -1.7173 10.6377 27 1 4.6216 -0.6820 11.4567 28 1 2.6007 -2.0000 11.2100 29 1 4.7524 -2.9614 10.6395 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2626 1.8456 -1.9480 34 1 2.8566 1.0532 -1.9652 35 1 4.5724 4.0646 -0.8777 36 1 4.8057 2.3599 -1.3346 37 1 3.3875 3.3732 1.1723 38 1 4.9974 2.6136 1.1104 39 1 2.6015 -0.0652 2.2372 40 1 2.5727 1.6564 2.6880 41 1 5.2639 0.8706 2.3458 42 1 6.9507 0.7102 3.0521 43 1 9.1241 0.4628 4.1694 44 1 9.2329 -0.1503 6.5491 45 1 7.1708 -0.5228 7.8307 46 1 1.7693 -1.2105 8.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361469585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:30 Heat of formation + Delta-G solvation = -125.583079 kcal Electronic energy + Delta-G solvation = -29130.140548 eV Core-core repulsion = 24985.948372 eV Total energy + Delta-G solvation = -4144.192176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25635 -39.46538 -38.01178 -37.50415 -36.32694 -35.25967 -32.60214 -32.31241 -30.73849 -30.43791 -28.91606 -27.30564 -26.81338 -25.36028 -23.58893 -23.41363 -22.35697 -21.27516 -20.53754 -19.81485 -18.04341 -17.67643 -17.07381 -16.72035 -16.24072 -15.79085 -15.74810 -15.52735 -14.87054 -14.76236 -14.61030 -14.21591 -14.15143 -14.04106 -13.71292 -13.63344 -13.43904 -13.16627 -12.64535 -12.58328 -12.48037 -12.40822 -11.85859 -11.70552 -11.58616 -11.34003 -11.17830 -11.10643 -11.01460 -10.87624 -10.79583 -10.65160 -10.47109 -10.32186 -9.56671 -9.46271 -8.86773 -8.81852 -8.51055 -8.25670 -7.29975 -6.43196 -4.03333 1.73011 2.32654 3.12174 3.14412 3.16770 3.26343 3.62543 3.78096 3.81350 3.94452 4.43446 4.45771 4.53486 4.66249 4.73334 4.87323 5.02288 5.07666 5.08917 5.18209 5.20125 5.22542 5.30988 5.38521 5.41556 5.50264 5.52914 5.56713 5.60275 5.70139 5.73705 5.84471 6.02571 6.08863 6.12542 6.22473 6.56913 6.69773 6.70949 6.91800 6.98201 7.03131 7.06640 7.24742 7.29881 7.70205 7.93181 8.15050 8.96190 9.13501 9.68805 10.70501 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002969 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.146214 B = 9429.153229 C =11150.836177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.064 3.936 4 H 0.074 0.926 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.151 4.151 9 C -0.098 4.098 10 H 0.086 0.914 11 C 0.134 3.866 12 N -0.743 5.743 13 C 0.554 3.446 14 O -0.501 6.501 15 C -0.227 4.227 16 C -0.039 4.039 17 C -0.231 4.231 18 C -0.051 4.051 19 C -0.238 4.238 20 C 0.189 3.811 21 O -0.124 6.124 22 C -0.405 4.405 23 H 0.093 0.907 24 C 0.045 3.955 25 N -0.833 5.833 26 Si 0.941 3.059 27 H -0.269 1.269 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.390 0.610 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 5.399 -17.539 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.005 3.995 4 H 0.092 0.908 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.019 4.019 8 C -0.188 4.188 9 C -0.117 4.117 10 H 0.105 0.895 11 C 0.010 3.990 12 N -0.399 5.399 13 C 0.343 3.657 14 O -0.375 6.375 15 C -0.231 4.231 16 C -0.057 4.057 17 C -0.250 4.250 18 C -0.070 4.070 19 C -0.257 4.257 20 C 0.129 3.871 21 O -0.022 6.022 22 C -0.480 4.480 23 H 0.111 0.889 24 C -0.163 4.163 25 N -0.464 5.464 26 Si 0.765 3.235 27 H -0.194 1.194 28 H -0.202 1.202 29 H -0.194 1.194 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.224 0.776 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.514 5.237 -17.092 17.940 hybrid contribution 0.551 -0.294 0.761 0.985 sum 2.065 4.944 -16.331 17.187 Atomic orbital electron populations 1.22854 0.80691 1.03127 1.00112 1.87945 1.19972 1.26542 1.94921 1.22705 0.95083 0.85648 0.96081 0.90825 1.23023 0.98588 0.85669 0.96128 1.87954 1.32420 1.30112 1.79192 1.22674 0.84791 1.02447 0.91998 1.22317 1.02478 0.96403 0.97641 1.21532 0.96025 0.97838 0.96299 0.89544 1.21124 0.86193 1.02044 0.89623 1.45871 1.08050 1.74625 1.11379 1.18221 0.89563 0.77084 0.80841 1.90948 1.35254 1.47698 1.63576 1.18861 0.92658 1.18919 0.92701 1.20739 0.91637 0.95825 0.97544 1.20452 0.96595 1.12394 0.95590 1.20890 0.97104 0.95032 0.93954 1.21158 0.91814 1.11276 1.01484 1.19278 0.87023 0.90923 0.89831 1.84177 1.25231 1.68013 1.24737 1.21451 0.94961 1.44922 0.86710 0.88933 1.25383 0.94249 0.96530 1.00129 1.70124 0.97728 1.41557 1.36964 0.85801 0.78089 0.79381 0.80258 1.19375 1.20159 1.19367 0.93488 0.94144 0.89330 0.88788 0.92196 0.88420 0.92825 0.90331 0.89808 0.90879 0.92047 0.77557 0.87171 0.87308 0.87205 0.85097 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.37 9.75 -35.23 -0.34 -4.71 16 3 C 0.06 0.66 2.21 -26.58 -0.06 0.61 16 4 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 5 C 0.04 0.39 6.47 37.21 0.24 0.63 16 6 O -0.38 -3.82 10.77 -35.23 -0.38 -4.20 16 7 C 0.06 0.47 6.84 37.20 0.25 0.72 16 8 C -0.15 -1.37 5.26 -26.60 -0.14 -1.51 16 9 C -0.10 -1.06 2.03 -90.44 -0.18 -1.24 16 10 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 11 C 0.13 2.00 5.01 -4.04 -0.02 1.98 16 12 N -0.74 -12.05 5.27 -61.35 -0.32 -12.37 16 13 C 0.55 12.32 7.76 -12.47 -0.10 12.22 16 14 O -0.50 -13.94 15.17 -16.56 -0.25 -14.19 16 15 C -0.23 -4.95 5.89 -104.82 -0.62 -5.57 16 16 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 17 C -0.23 -3.77 10.02 -39.61 -0.40 -4.17 16 18 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 19 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 20 C 0.19 4.73 6.66 -38.60 -0.26 4.48 16 21 O -0.12 -3.68 7.84 -21.07 -0.17 -3.84 16 22 C -0.40 -11.54 9.49 30.90 0.29 -11.24 16 23 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 24 C 0.04 1.26 5.49 -17.51 -0.10 1.17 16 25 N -0.83 -25.27 13.67 55.48 0.76 -24.51 16 26 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 28 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 30 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.04 0.29 7.96 -51.93 -0.41 -0.13 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.69 7.29 -51.93 -0.38 0.31 16 39 H 0.07 1.25 7.65 -51.93 -0.40 0.86 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.39 4.98 5.72 -40.82 -0.23 4.75 16 42 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 44 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -35.82 377.15 -7.67 -43.49 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.51 Total: 7.48 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.12 Total: -8.42 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.44 Total: -36.88 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.14 Total: -26.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.82 -7.67 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361469585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.093 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds