Wall clock time and date at job start Tue Mar 31 2020 19:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00113 * 2 1 4 4 H 1.09000 * 109.57350 * 29.85104 * 3 2 1 5 5 C 1.53102 * 109.60026 * 269.72589 * 3 2 1 6 6 O 1.42902 * 109.48512 * 182.57586 * 5 3 2 7 7 C 1.42908 * 114.09659 * 61.11637 * 6 5 3 8 8 C 1.53087 * 109.41111 * 298.83981 * 7 6 5 9 9 C 1.53169 * 109.16804 * 57.61112 * 8 7 6 10 10 H 1.08998 * 109.54682 * 62.97102 * 9 8 7 11 11 C 1.53000 * 109.54678 * 183.15429 * 9 8 7 12 12 N 1.46500 * 109.46945 * 294.82032 * 11 9 8 13 13 C 1.34779 * 120.00399 * 180.02562 * 12 11 9 14 14 O 1.21588 * 119.99313 * 0.02562 * 13 12 11 15 15 C 1.47526 * 120.00126 * 179.97438 * 13 12 11 16 16 C 1.39664 * 120.20132 * 0.02562 * 15 13 12 17 17 C 1.37827 * 119.92349 * 179.72060 * 16 15 13 18 18 C 1.38572 * 120.32330 * 0.02562 * 17 16 15 19 19 C 1.38022 * 120.39963 * 0.02562 * 18 17 16 20 20 C 1.38835 * 120.07340 * 359.95700 * 19 18 17 21 21 O 1.35522 * 120.15960 * 180.02562 * 20 19 18 22 22 C 1.34817 * 117.00142 * 354.39545 * 21 20 19 23 23 H 1.07996 * 120.00199 * 5.07266 * 22 21 20 24 24 C 1.38699 * 119.99816 * 185.06119 * 22 21 20 25 25 N 1.31522 * 120.00229 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99739 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47019 * 60.00581 * 26 24 22 28 28 H 1.48501 * 109.46859 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47044 * 300.00612 * 26 24 22 30 30 H 1.09002 * 109.47025 * 299.99323 * 1 2 3 31 31 H 1.09002 * 109.47290 * 59.99349 * 1 2 3 32 32 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47930 * 62.55381 * 5 3 2 34 34 H 1.09003 * 109.41993 * 302.56681 * 5 3 2 35 35 H 1.09003 * 109.47843 * 178.85861 * 7 6 5 36 36 H 1.08999 * 109.48098 * 58.81872 * 7 6 5 37 37 H 1.09007 * 109.52372 * 297.70156 * 8 7 6 38 38 H 1.09005 * 109.52420 * 177.51547 * 8 7 6 39 39 H 1.09001 * 109.47429 * 174.82472 * 11 9 8 40 40 H 1.08990 * 109.47232 * 54.82017 * 11 9 8 41 41 H 0.97006 * 120.00203 * 359.97438 * 12 11 9 42 42 H 1.08002 * 120.03755 * 359.74636 * 16 15 13 43 43 H 1.07999 * 119.83746 * 179.97438 * 17 16 15 44 44 H 1.07997 * 119.80157 * 179.97438 * 18 17 16 45 45 H 1.08004 * 119.96331 * 179.97438 * 19 18 17 46 46 H 0.97002 * 119.99564 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5112 5 6 2.2254 1.7718 -1.4423 6 8 2.8615 3.0515 -1.4396 7 6 4.1493 3.0617 -0.8201 8 6 4.0111 2.6492 0.6476 9 6 3.3607 1.2645 0.7218 10 1 4.0086 0.5311 0.2418 11 6 3.1466 0.8773 2.1865 12 7 4.4457 0.7262 2.8465 13 6 4.5042 0.3854 4.1492 14 8 3.4787 0.2031 4.7764 15 6 5.8124 0.2327 4.8137 16 6 6.9930 0.4407 4.0970 17 6 8.2120 0.3021 4.7250 18 6 8.2732 -0.0436 6.0656 19 6 7.1149 -0.2533 6.7863 20 6 5.8781 -0.1178 6.1703 21 8 4.7397 -0.3228 6.8765 22 6 4.8759 -0.7689 8.1414 23 1 5.8596 -0.8686 8.5758 24 6 3.7527 -1.0998 8.8848 25 7 2.5547 -0.9787 8.3557 26 14 3.9415 -1.7173 10.6377 27 1 4.6216 -0.6820 11.4567 28 1 2.6007 -2.0000 11.2100 29 1 4.7524 -2.9614 10.6395 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2626 1.8456 -1.9480 34 1 2.8566 1.0532 -1.9652 35 1 4.5724 4.0646 -0.8777 36 1 4.8057 2.3599 -1.3346 37 1 3.3875 3.3732 1.1723 38 1 4.9974 2.6136 1.1104 39 1 2.6015 -0.0652 2.2372 40 1 2.5727 1.6564 2.6880 41 1 5.2639 0.8706 2.3458 42 1 6.9507 0.7102 3.0521 43 1 9.1241 0.4628 4.1694 44 1 9.2329 -0.1503 6.5491 45 1 7.1708 -0.5228 7.8307 46 1 1.7693 -1.2105 8.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361469585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:29 Heat of formation + Delta-G solvation = -152.311794 kcal Electronic energy + Delta-G solvation = -29131.299592 eV Core-core repulsion = 24985.948372 eV Total energy + Delta-G solvation = -4145.351220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41582 -40.86833 -39.71022 -38.29665 -38.02427 -36.56760 -34.34087 -33.88071 -31.98993 -31.41187 -30.56619 -28.47363 -27.56841 -27.32431 -24.91138 -24.17404 -23.69335 -22.84697 -21.62637 -21.22510 -19.85082 -19.30189 -18.05128 -17.77496 -17.53627 -17.05545 -16.69807 -16.50438 -16.34217 -16.07331 -16.03268 -15.81004 -15.49801 -15.44814 -15.25473 -14.93976 -14.39528 -14.33687 -14.21280 -14.04079 -13.62743 -13.55001 -13.44403 -12.98932 -12.73597 -12.69445 -12.50221 -12.35902 -12.33308 -12.16003 -12.11078 -11.81400 -11.47764 -11.43539 -11.04854 -10.82650 -10.66106 -10.23346 -10.11619 -9.77965 -9.03329 -8.44631 -6.15969 0.12687 0.73470 1.31604 1.44832 1.49705 2.09726 2.15732 2.22564 2.52210 2.87790 3.07327 3.22761 3.46988 3.50627 3.62380 3.72546 3.93767 4.02010 4.07448 4.10974 4.24974 4.29648 4.34616 4.41864 4.45093 4.51336 4.54105 4.63730 4.69585 4.71371 4.77732 4.80395 4.83138 4.94344 4.99937 5.04795 5.07474 5.14613 5.20482 5.48521 5.51154 5.61591 5.70190 5.95754 5.98319 6.17776 6.28911 6.68824 6.94416 7.48026 7.80600 8.75733 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002969 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.146214 B = 9429.153229 C =11150.836177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.061 3.939 4 H 0.065 0.935 5 C 0.050 3.950 6 O -0.393 6.393 7 C 0.057 3.943 8 C -0.147 4.147 9 C -0.087 4.087 10 H 0.099 0.901 11 C 0.137 3.863 12 N -0.713 5.713 13 C 0.546 3.454 14 O -0.571 6.571 15 C -0.245 4.245 16 C -0.029 4.029 17 C -0.200 4.200 18 C -0.040 4.040 19 C -0.259 4.259 20 C 0.148 3.852 21 O -0.190 6.190 22 C -0.429 4.429 23 H 0.107 0.893 24 C -0.022 4.022 25 N -0.906 5.906 26 Si 1.022 2.978 27 H -0.253 1.253 28 H -0.273 1.273 29 H -0.254 1.254 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.412 0.588 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.154 0.846 45 H 0.123 0.877 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 6.195 -20.189 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.002 3.998 4 H 0.083 0.917 5 C -0.027 4.027 6 O -0.312 6.312 7 C -0.019 4.019 8 C -0.185 4.185 9 C -0.106 4.106 10 H 0.117 0.883 11 C 0.013 3.987 12 N -0.369 5.369 13 C 0.336 3.664 14 O -0.450 6.450 15 C -0.250 4.250 16 C -0.047 4.047 17 C -0.218 4.218 18 C -0.058 4.058 19 C -0.278 4.278 20 C 0.093 3.907 21 O -0.092 6.092 22 C -0.505 4.505 23 H 0.124 0.876 24 C -0.222 4.222 25 N -0.541 5.541 26 Si 0.840 3.160 27 H -0.177 1.177 28 H -0.198 1.198 29 H -0.178 1.178 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.250 0.750 42 H 0.179 0.821 43 H 0.183 0.817 44 H 0.172 0.828 45 H 0.140 0.860 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.095 6.067 -19.836 21.620 hybrid contribution -0.505 -0.430 1.228 1.396 sum 5.590 5.637 -18.607 20.230 Atomic orbital electron populations 1.22991 0.79634 1.03851 1.00799 1.87904 1.21285 1.27321 1.95115 1.22774 0.94554 0.85170 0.97252 0.91656 1.23000 0.99456 0.85553 0.94738 1.87946 1.33406 1.30527 1.79308 1.22823 0.84343 1.03984 0.90742 1.22323 1.02650 0.94595 0.98940 1.21492 0.96984 0.99376 0.92737 0.88286 1.21125 0.85090 1.00110 0.92342 1.45571 1.09648 1.72201 1.09492 1.18585 0.89116 0.76404 0.82253 1.90930 1.37523 1.50977 1.65585 1.19298 0.94321 1.19194 0.92204 1.21305 0.90010 0.93798 0.99608 1.21187 0.98178 1.07471 0.94941 1.21443 0.97247 0.92442 0.94679 1.21306 0.92173 1.12549 1.01749 1.20103 0.87532 0.91669 0.91364 1.84182 1.27674 1.71794 1.25600 1.22010 0.95888 1.45339 0.87263 0.87569 1.26774 0.93512 0.96555 1.05320 1.70327 0.98870 1.45564 1.39388 0.84624 0.78341 0.79329 0.73669 1.17719 1.19813 1.17816 0.94418 0.91818 0.88696 0.87663 0.91325 0.86712 0.91075 0.91578 0.88338 0.93724 0.93874 0.74996 0.82100 0.81660 0.82828 0.85953 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.40 -9.28 9.75 -148.98 -1.45 -10.73 16 3 C 0.06 1.24 2.21 30.69 0.07 1.31 16 4 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 5 C 0.05 0.80 6.47 72.02 0.47 1.27 16 6 O -0.39 -6.94 10.77 -148.98 -1.60 -8.54 16 7 C 0.06 0.73 6.84 72.01 0.49 1.23 16 8 C -0.15 -2.34 5.26 30.68 0.16 -2.18 16 9 C -0.09 -1.78 2.03 -10.68 -0.02 -1.80 16 10 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 11 C 0.14 4.24 5.01 86.38 0.43 4.67 16 12 N -0.71 -22.87 5.27 -466.29 -2.46 -25.33 16 13 C 0.55 25.30 7.76 86.69 0.67 25.97 16 14 O -0.57 -34.65 15.17 16.90 0.26 -34.39 16 15 C -0.25 -10.72 5.89 -19.99 -0.12 -10.84 16 16 C -0.03 -0.85 9.53 22.52 0.21 -0.64 16 17 C -0.20 -5.19 10.02 22.25 0.22 -4.97 16 18 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 19 C -0.26 -11.09 9.16 22.36 0.20 -10.89 16 20 C 0.15 7.73 6.66 22.91 0.15 7.88 16 21 O -0.19 -12.27 7.84 0.79 0.01 -12.26 16 22 C -0.43 -26.30 9.49 67.93 0.64 -25.65 16 23 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 24 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 25 N -0.91 -60.02 13.67 21.62 0.30 -59.72 16 26 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 27 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 30 H 0.04 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.06 0.85 7.96 -2.39 -0.02 0.83 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 1.45 7.96 -2.39 -0.02 1.43 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.10 1.25 7.29 -2.38 -0.02 1.24 16 39 H 0.04 1.65 7.65 -2.39 -0.02 1.63 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.41 9.22 5.72 -92.70 -0.53 8.69 16 42 H 0.16 3.06 6.40 -2.91 -0.02 3.05 16 43 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 46 H 0.27 16.43 8.31 -92.71 -0.77 15.66 16 Total: -1.00 -91.53 377.15 3.06 -88.47 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.48 Total: 30.67 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.51 Total: -14.86 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.16 Total: -85.05 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -2.79 Total: -65.92 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -91.53 3.06 -88.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361469585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.841 kcal (2) G-P(sol) polarization free energy of solvation -91.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds