Wall clock time and date at job start Tue Mar 31 2020 19:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99622 * 2 1 4 4 C 1.53000 * 109.46759 * 180.02562 * 3 2 1 5 5 C 1.52997 * 110.30762 * 60.72005 * 4 3 2 6 6 O 1.42894 * 109.47217 * 300.70207 * 5 4 3 7 7 C 1.54288 * 110.34343 * 183.01054 * 4 3 2 8 8 C 1.54388 * 104.96126 * 118.86770 * 7 4 3 9 9 N 1.48140 * 104.61954 * 336.13442 * 8 7 4 10 10 C 1.34780 * 127.83951 * 219.60400 * 9 8 7 11 11 O 1.21597 * 119.99657 * 176.58137 * 10 9 8 12 12 C 1.47530 * 120.00126 * 356.58395 * 10 9 8 13 13 C 1.39670 * 120.19519 * 338.43959 * 12 10 9 14 14 C 1.37827 * 119.92026 * 179.72110 * 13 12 10 15 15 C 1.38572 * 120.32149 * 0.55730 * 14 13 12 16 16 C 1.38023 * 120.40312 * 359.71908 * 15 14 13 17 17 C 1.38839 * 120.07258 * 0.02562 * 16 15 14 18 18 O 1.35521 * 120.16355 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99972 * 5.60915 * 18 17 16 20 20 H 1.08000 * 119.99656 * 354.92774 * 19 18 17 21 21 C 1.38693 * 119.99978 * 174.92391 * 19 18 17 22 22 N 1.31514 * 120.00140 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99926 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47269 * 89.99766 * 23 21 19 25 25 H 1.48505 * 109.47138 * 209.99813 * 23 21 19 26 26 H 1.48493 * 109.47377 * 329.99704 * 23 21 19 27 27 C 1.48150 * 104.32306 * 39.58617 * 9 8 7 28 28 H 1.09001 * 109.47221 * 59.99481 * 1 2 3 29 29 H 1.08993 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46828 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47518 * 300.00104 * 3 2 1 32 32 H 1.08999 * 109.47308 * 60.00681 * 3 2 1 33 33 H 1.08996 * 109.47062 * 60.70268 * 5 4 3 34 34 H 1.09005 * 109.46975 * 180.70142 * 5 4 3 35 35 H 0.96706 * 114.00146 * 179.97438 * 6 5 4 36 36 H 1.08998 * 110.34578 * 237.73900 * 7 4 3 37 37 H 1.08999 * 110.33938 * 359.97438 * 7 4 3 38 38 H 1.08999 * 110.40835 * 217.34753 * 8 7 4 39 39 H 1.09002 * 110.40777 * 94.92220 * 8 7 4 40 40 H 1.08008 * 120.03768 * 359.97438 * 13 12 10 41 41 H 1.07996 * 119.83654 * 180.27731 * 14 13 12 42 42 H 1.08002 * 119.79933 * 179.69819 * 15 14 13 43 43 H 1.08005 * 119.96969 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00613 * 179.97438 * 22 21 19 45 45 H 1.09005 * 110.40315 * 201.63157 * 27 9 8 46 46 H 1.09001 * 110.40855 * 79.19929 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0088 0.4435 -1.2525 6 8 3.4243 -0.8601 -1.2839 7 6 4.1842 2.5825 0.0753 8 6 5.0003 2.5724 1.3859 9 7 4.3506 1.5371 2.2229 10 6 4.1164 1.5737 3.5497 11 8 3.5130 0.6643 4.0858 12 6 4.5921 2.7172 4.3515 13 6 5.6361 3.5179 3.8828 14 6 6.0721 4.5881 4.6338 15 6 5.4873 4.8679 5.8585 16 6 4.4585 4.0820 6.3371 17 6 4.0028 3.0029 5.5919 18 8 2.9924 2.2304 6.0598 19 6 2.3940 2.6298 7.1999 20 1 2.7775 3.4822 7.7410 21 6 1.2860 1.9461 7.6780 22 7 0.7026 2.3355 8.7904 23 14 0.6232 0.4714 6.7423 24 1 1.2866 -0.7639 7.2312 25 1 -0.8421 0.3654 6.9592 26 1 0.8981 0.6404 5.2929 27 6 4.0164 0.4525 1.2707 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 3.7058 0.9989 -2.1400 34 1 5.0950 0.3542 -1.2330 35 1 3.6808 -1.3878 -2.0526 36 1 4.8417 2.7421 -0.7792 37 1 3.4163 3.3551 0.1126 38 1 4.9464 3.5452 1.8746 39 1 6.0375 2.3037 1.1857 40 1 6.0984 3.3010 2.9311 41 1 6.8765 5.2090 4.2680 42 1 5.8389 5.7057 6.4423 43 1 4.0075 4.3066 7.2925 44 1 -0.0725 1.8576 9.1246 45 1 3.2201 -0.1741 1.6726 46 1 4.8999 -0.1474 1.0525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362582357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:33 Heat of formation + Delta-G solvation = -101.466547 kcal Electronic energy + Delta-G solvation = -30249.396942 eV Core-core repulsion = 26106.250537 eV Total energy + Delta-G solvation = -4143.146405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36876 -39.27110 -37.86907 -36.84770 -36.53959 -36.08828 -32.64959 -32.44390 -30.55677 -29.52596 -29.14528 -27.15147 -26.07294 -25.38924 -25.17301 -23.56828 -22.22814 -21.35914 -19.50507 -19.33941 -17.98265 -17.56473 -17.01334 -16.51084 -16.32786 -16.10439 -15.69018 -15.37345 -15.05976 -14.61756 -14.50270 -14.21326 -13.98883 -13.90328 -13.68646 -13.37380 -13.16300 -12.80524 -12.56315 -12.41989 -12.35171 -12.22821 -12.07413 -11.80016 -11.46809 -11.31183 -11.22659 -11.13947 -10.99545 -10.73360 -10.62121 -10.56187 -10.06470 -10.03225 -9.59923 -9.51401 -9.06935 -8.88569 -8.41587 -8.34483 -7.47084 -6.46688 -4.11962 1.60992 2.18315 3.27212 3.32702 3.39081 3.52259 3.64490 3.69849 4.01561 4.34762 4.39576 4.49748 4.65380 4.74292 4.78916 4.97265 5.06052 5.09520 5.12387 5.20243 5.24328 5.29529 5.39342 5.42187 5.46637 5.51285 5.58761 5.59703 5.66292 5.73037 5.76830 5.85181 5.89153 5.98934 6.06449 6.23355 6.37682 6.47237 6.63812 6.85917 7.02799 7.15831 7.25738 7.48585 7.58973 7.68806 7.95320 7.97830 8.84061 8.89541 9.51878 10.58560 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.004614 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.960520 B = 6066.456551 C = 8142.488698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.080 3.920 4 C -0.072 4.072 5 C 0.097 3.903 6 O -0.546 6.546 7 C -0.124 4.124 8 C 0.090 3.910 9 N -0.631 5.631 10 C 0.585 3.415 11 O -0.516 6.516 12 C -0.220 4.220 13 C -0.056 4.056 14 C -0.222 4.222 15 C -0.052 4.052 16 C -0.227 4.227 17 C 0.201 3.799 18 O -0.172 6.172 19 C -0.395 4.395 20 H 0.109 0.891 21 C 0.072 3.928 22 N -0.870 5.870 23 Si 0.901 3.099 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.245 1.245 27 C 0.128 3.872 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.369 0.631 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.138 0.862 44 H 0.282 0.718 45 H 0.093 0.907 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 1.648 -21.970 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.003 3.997 4 C -0.073 4.073 5 C 0.018 3.982 6 O -0.349 6.349 7 C -0.162 4.162 8 C -0.033 4.033 9 N -0.368 5.368 10 C 0.377 3.623 11 O -0.391 6.391 12 C -0.225 4.225 13 C -0.074 4.074 14 C -0.241 4.241 15 C -0.070 4.070 16 C -0.246 4.246 17 C 0.144 3.856 18 O -0.072 6.072 19 C -0.470 4.470 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.506 5.506 23 Si 0.726 3.274 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.168 1.168 27 C 0.005 3.995 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.214 0.786 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.849 0.916 -20.841 21.956 hybrid contribution -0.241 -0.272 -0.696 0.785 sum 6.608 0.644 -21.537 22.537 Atomic orbital electron populations 1.22704 0.81982 1.02491 0.99426 1.88068 1.18450 1.26307 1.95120 1.22413 0.91974 0.85614 0.99742 1.21577 0.94631 0.95492 0.95610 1.22083 0.95734 0.84675 0.95713 1.86766 1.73040 1.26255 1.48853 1.22582 0.99928 0.95367 0.98349 1.22743 0.96078 0.94151 0.90340 1.48877 1.61573 1.19819 1.06534 1.17861 0.78734 0.86454 0.79215 1.90842 1.40117 1.38345 1.69804 1.18769 1.05416 1.02255 0.96060 1.21298 0.94299 0.93363 0.98454 1.20561 1.04731 1.01356 0.97403 1.20968 0.93929 0.97194 0.94948 1.21269 1.01786 0.98598 1.02915 1.19006 0.87855 0.88623 0.90123 1.83750 1.40392 1.44156 1.38924 1.20908 1.11596 1.16498 0.98034 0.87394 1.24474 0.94747 0.98543 0.95559 1.69631 1.21015 1.40209 1.19715 0.86188 0.76864 0.81554 0.82766 1.19698 1.21189 1.16829 1.22120 1.00766 0.89943 0.86643 0.94747 0.89827 0.94311 0.93773 0.93126 0.93858 0.93609 0.78563 0.89830 0.90178 0.88467 0.91099 0.85349 0.87004 0.86865 0.84425 0.90832 0.88873 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -5.32 8.06 -56.79 -0.46 -5.78 16 3 C 0.08 1.03 4.61 37.16 0.17 1.20 16 4 C -0.07 -0.82 0.73 -153.11 -0.11 -0.93 16 5 C 0.10 0.86 5.63 37.16 0.21 1.06 16 6 O -0.55 -5.71 11.49 -56.79 -0.65 -6.36 16 7 C -0.12 -1.12 6.31 -25.33 -0.16 -1.27 16 8 C 0.09 1.01 5.11 -2.41 -0.01 0.99 16 9 N -0.63 -10.37 3.32 -170.53 -0.57 -10.94 16 10 C 0.58 12.68 7.69 -12.47 -0.10 12.58 16 11 O -0.52 -13.68 15.73 -15.38 -0.24 -13.92 16 12 C -0.22 -4.62 5.79 -104.81 -0.61 -5.23 16 13 C -0.06 -0.91 7.99 -39.20 -0.31 -1.22 16 14 C -0.22 -3.42 10.02 -39.61 -0.40 -3.82 16 15 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 16 C -0.23 -4.83 9.16 -39.44 -0.36 -5.19 16 17 C 0.20 4.85 6.64 -38.60 -0.26 4.60 16 18 O -0.17 -4.84 6.89 -19.87 -0.14 -4.97 16 19 C -0.40 -11.47 9.95 30.90 0.31 -11.17 16 20 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 21 C 0.07 2.11 5.49 -17.52 -0.10 2.01 16 22 N -0.87 -25.53 13.96 55.48 0.77 -24.75 16 23 Si 0.90 23.82 28.62 -169.99 -4.86 18.95 16 24 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.25 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.13 1.92 5.83 -2.41 -0.01 1.91 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.37 2.13 9.12 45.56 0.42 2.55 16 36 H 0.08 0.50 7.72 -51.93 -0.40 0.10 16 37 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 38 H 0.10 1.09 5.42 -51.93 -0.28 0.80 16 39 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 40 H 0.13 1.63 4.69 -52.48 -0.25 1.39 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.14 3.04 5.64 -52.48 -0.30 2.75 16 44 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.09 1.76 7.03 -51.93 -0.37 1.39 16 46 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -36.27 371.34 -7.19 -43.46 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.62 Total: 2.99 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.02 Total: -4.28 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.21 Total: -35.69 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.49 Total: -31.03 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.86 Total: 18.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.27 -7.19 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362582357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.009 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds