Wall clock time and date at job start Tue Mar 31 2020 19:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99622 * 2 1 4 4 C 1.53000 * 109.46759 * 180.02562 * 3 2 1 5 5 C 1.52997 * 110.30762 * 60.72005 * 4 3 2 6 6 O 1.42894 * 109.47217 * 300.70207 * 5 4 3 7 7 C 1.54288 * 110.34343 * 183.01054 * 4 3 2 8 8 C 1.54388 * 104.96126 * 118.86770 * 7 4 3 9 9 N 1.48140 * 104.61954 * 336.13442 * 8 7 4 10 10 C 1.34780 * 127.83951 * 219.60400 * 9 8 7 11 11 O 1.21597 * 119.99657 * 176.58137 * 10 9 8 12 12 C 1.47530 * 120.00126 * 356.58395 * 10 9 8 13 13 C 1.39670 * 120.19519 * 338.43959 * 12 10 9 14 14 C 1.37827 * 119.92026 * 179.72110 * 13 12 10 15 15 C 1.38572 * 120.32149 * 0.55730 * 14 13 12 16 16 C 1.38023 * 120.40312 * 359.71908 * 15 14 13 17 17 C 1.38839 * 120.07258 * 0.02562 * 16 15 14 18 18 O 1.35521 * 120.16355 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99972 * 5.60915 * 18 17 16 20 20 H 1.08000 * 119.99656 * 354.92774 * 19 18 17 21 21 C 1.38693 * 119.99978 * 174.92391 * 19 18 17 22 22 N 1.31514 * 120.00140 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99926 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47269 * 89.99766 * 23 21 19 25 25 H 1.48505 * 109.47138 * 209.99813 * 23 21 19 26 26 H 1.48493 * 109.47377 * 329.99704 * 23 21 19 27 27 C 1.48150 * 104.32306 * 39.58617 * 9 8 7 28 28 H 1.09001 * 109.47221 * 59.99481 * 1 2 3 29 29 H 1.08993 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46828 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.47518 * 300.00104 * 3 2 1 32 32 H 1.08999 * 109.47308 * 60.00681 * 3 2 1 33 33 H 1.08996 * 109.47062 * 60.70268 * 5 4 3 34 34 H 1.09005 * 109.46975 * 180.70142 * 5 4 3 35 35 H 0.96706 * 114.00146 * 179.97438 * 6 5 4 36 36 H 1.08998 * 110.34578 * 237.73900 * 7 4 3 37 37 H 1.08999 * 110.33938 * 359.97438 * 7 4 3 38 38 H 1.08999 * 110.40835 * 217.34753 * 8 7 4 39 39 H 1.09002 * 110.40777 * 94.92220 * 8 7 4 40 40 H 1.08008 * 120.03768 * 359.97438 * 13 12 10 41 41 H 1.07996 * 119.83654 * 180.27731 * 14 13 12 42 42 H 1.08002 * 119.79933 * 179.69819 * 15 14 13 43 43 H 1.08005 * 119.96969 * 180.02562 * 16 15 14 44 44 H 0.96997 * 120.00613 * 179.97438 * 22 21 19 45 45 H 1.09005 * 110.40315 * 201.63157 * 27 9 8 46 46 H 1.09001 * 110.40855 * 79.19929 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0088 0.4435 -1.2525 6 8 3.4243 -0.8601 -1.2839 7 6 4.1842 2.5825 0.0753 8 6 5.0003 2.5724 1.3859 9 7 4.3506 1.5371 2.2229 10 6 4.1164 1.5737 3.5497 11 8 3.5130 0.6643 4.0858 12 6 4.5921 2.7172 4.3515 13 6 5.6361 3.5179 3.8828 14 6 6.0721 4.5881 4.6338 15 6 5.4873 4.8679 5.8585 16 6 4.4585 4.0820 6.3371 17 6 4.0028 3.0029 5.5919 18 8 2.9924 2.2304 6.0598 19 6 2.3940 2.6298 7.1999 20 1 2.7775 3.4822 7.7410 21 6 1.2860 1.9461 7.6780 22 7 0.7026 2.3355 8.7904 23 14 0.6232 0.4714 6.7423 24 1 1.2866 -0.7639 7.2312 25 1 -0.8421 0.3654 6.9592 26 1 0.8981 0.6404 5.2929 27 6 4.0164 0.4525 1.2707 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 3.7058 0.9989 -2.1400 34 1 5.0950 0.3542 -1.2330 35 1 3.6808 -1.3878 -2.0526 36 1 4.8417 2.7421 -0.7792 37 1 3.4163 3.3551 0.1126 38 1 4.9464 3.5452 1.8746 39 1 6.0375 2.3037 1.1857 40 1 6.0984 3.3010 2.9311 41 1 6.8765 5.2090 4.2680 42 1 5.8389 5.7057 6.4423 43 1 4.0075 4.3066 7.2925 44 1 -0.0725 1.8576 9.1246 45 1 3.2201 -0.1741 1.6726 46 1 4.8999 -0.1474 1.0525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362582357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:32 Heat of formation + Delta-G solvation = -128.998694 kcal Electronic energy + Delta-G solvation = -30250.590825 eV Core-core repulsion = 26106.250537 eV Total energy + Delta-G solvation = -4144.340288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70697 -40.70862 -39.33039 -38.20042 -37.96595 -37.01471 -34.56862 -33.84785 -31.98425 -30.91153 -30.36761 -28.19277 -27.51795 -26.89541 -26.31792 -24.76050 -23.47192 -22.97940 -20.96771 -20.31060 -19.92904 -18.90507 -18.24558 -17.83587 -17.33567 -17.16057 -17.03864 -16.65812 -16.41391 -16.23588 -15.95773 -15.63596 -15.51470 -15.26250 -15.05734 -14.70313 -14.47987 -14.27851 -14.13104 -13.91047 -13.54361 -13.44569 -13.28199 -13.10932 -12.85491 -12.79986 -12.63732 -12.47751 -12.16786 -12.12594 -11.94282 -11.84202 -11.51124 -11.44179 -11.01795 -10.78437 -10.65899 -10.55914 -9.92163 -9.71080 -9.15079 -8.62912 -6.30710 0.06231 0.62341 1.15820 1.22452 1.47777 1.89124 2.01851 2.21745 2.69475 2.77199 2.98673 3.11290 3.23188 3.52898 3.71201 3.87852 3.97968 4.00470 4.17277 4.23682 4.27965 4.32834 4.40457 4.42494 4.48996 4.51320 4.53730 4.60623 4.62075 4.67580 4.74805 4.77786 4.82016 4.90201 4.95467 5.00801 5.11639 5.16514 5.26913 5.42626 5.46478 5.61670 5.67740 5.81767 6.14669 6.25467 6.56192 6.74451 7.14443 7.27062 7.55822 8.48004 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.004614 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.960520 B = 6066.456551 C = 8142.488698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.385 6.385 3 C 0.075 3.925 4 C -0.069 4.069 5 C 0.099 3.901 6 O -0.578 6.578 7 C -0.113 4.113 8 C 0.078 3.922 9 N -0.627 5.627 10 C 0.571 3.429 11 O -0.585 6.585 12 C -0.228 4.228 13 C -0.044 4.044 14 C -0.185 4.185 15 C -0.042 4.042 16 C -0.249 4.249 17 C 0.158 3.842 18 O -0.220 6.220 19 C -0.401 4.401 20 H 0.096 0.904 21 C 0.030 3.970 22 N -0.908 5.908 23 Si 0.952 3.048 24 H -0.277 1.277 25 H -0.259 1.259 26 H -0.281 1.281 27 C 0.125 3.875 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.014 0.986 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.388 0.612 36 H 0.133 0.867 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.177 0.823 41 H 0.172 0.828 42 H 0.153 0.847 43 H 0.115 0.885 44 H 0.286 0.714 45 H 0.039 0.961 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.743 4.118 -26.697 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.303 6.303 3 C -0.002 4.002 4 C -0.070 4.070 5 C 0.021 3.979 6 O -0.384 6.384 7 C -0.151 4.151 8 C -0.043 4.043 9 N -0.361 5.361 10 C 0.364 3.636 11 O -0.466 6.466 12 C -0.233 4.233 13 C -0.062 4.062 14 C -0.203 4.203 15 C -0.061 4.061 16 C -0.268 4.268 17 C 0.106 3.894 18 O -0.124 6.124 19 C -0.477 4.477 20 H 0.113 0.887 21 C -0.170 4.170 22 N -0.548 5.548 23 Si 0.777 3.223 24 H -0.203 1.203 25 H -0.184 1.184 26 H -0.207 1.207 27 C 0.003 3.997 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.194 0.806 41 H 0.190 0.810 42 H 0.171 0.829 43 H 0.133 0.867 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.954 3.430 -25.659 28.109 hybrid contribution -1.124 -0.858 0.445 1.482 sum 9.829 2.572 -25.214 27.184 Atomic orbital electron populations 1.22809 0.81234 1.03180 0.99711 1.88045 1.19530 1.27579 1.95184 1.22562 0.93490 0.84884 0.99225 1.21679 0.93375 0.97103 0.94874 1.22163 0.96936 0.84049 0.94760 1.86729 1.73836 1.27433 1.50452 1.22631 1.00292 0.93375 0.98758 1.23241 0.98139 0.92680 0.90261 1.48898 1.60264 1.21658 1.05318 1.18173 0.78392 0.85974 0.81075 1.90804 1.43215 1.40775 1.71805 1.19188 1.06349 1.02679 0.95061 1.21883 0.92028 0.92159 1.00116 1.21296 1.03744 0.99991 0.95244 1.21477 0.91702 0.96887 0.95993 1.21321 1.03792 0.99261 1.02412 1.19769 0.87787 0.89877 0.91989 1.83746 1.43105 1.46450 1.39149 1.20905 1.11847 1.16149 0.98789 0.88694 1.24934 0.95410 1.00263 0.96404 1.69660 1.22410 1.41798 1.20918 0.85489 0.77768 0.79585 0.79463 1.20279 1.18358 1.20654 1.22217 0.99810 0.89852 0.87826 0.92132 0.89086 0.96235 0.90899 0.96814 0.91155 0.91088 0.76372 0.84904 0.90107 0.88003 0.86991 0.80596 0.81036 0.82887 0.86670 0.90371 0.94270 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.38 -11.62 8.06 -128.36 -1.03 -12.66 16 3 C 0.08 1.91 4.61 71.98 0.33 2.24 16 4 C -0.07 -1.39 0.73 -51.27 -0.04 -1.43 16 5 C 0.10 1.32 5.63 71.98 0.41 1.73 16 6 O -0.58 -10.80 11.49 -128.36 -1.48 -12.28 16 7 C -0.11 -1.44 6.31 31.50 0.20 -1.24 16 8 C 0.08 1.34 5.11 86.54 0.44 1.78 16 9 N -0.63 -20.05 3.32 -811.68 -2.69 -22.74 16 10 C 0.57 25.69 7.69 86.69 0.67 26.36 16 11 O -0.59 -33.78 15.73 15.73 0.25 -33.53 16 12 C -0.23 -9.56 5.79 -19.99 -0.12 -9.67 16 13 C -0.04 -1.23 7.99 22.52 0.18 -1.05 16 14 C -0.18 -4.49 10.02 22.25 0.22 -4.27 16 15 C -0.04 -1.30 10.03 22.30 0.22 -1.07 16 16 C -0.25 -10.81 9.16 22.36 0.20 -10.61 16 17 C 0.16 8.01 6.64 22.91 0.15 8.16 16 18 O -0.22 -13.46 6.89 -0.34 0.00 -13.46 16 19 C -0.40 -25.28 9.95 67.93 0.68 -24.61 16 20 H 0.10 5.99 5.44 -2.91 -0.02 5.97 16 21 C 0.03 1.90 5.49 84.85 0.47 2.37 16 22 N -0.91 -56.63 13.96 21.62 0.30 -56.33 16 23 Si 0.95 53.49 28.62 68.60 1.96 55.45 16 24 H -0.28 -15.50 7.11 99.48 0.71 -14.80 16 25 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.28 -17.30 7.11 99.48 0.71 -16.60 16 27 C 0.13 3.74 5.83 86.53 0.50 4.24 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 35 H 0.39 3.49 9.12 -74.05 -0.68 2.81 16 36 H 0.13 0.52 7.72 -2.39 -0.02 0.50 16 37 H 0.08 1.08 7.71 -2.39 -0.02 1.06 16 38 H 0.10 1.68 5.42 -2.39 -0.01 1.67 16 39 H 0.11 1.14 7.94 -2.39 -0.02 1.12 16 40 H 0.18 3.22 4.69 -2.91 -0.01 3.21 16 41 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 44 H 0.29 16.45 8.31 -92.71 -0.77 15.68 16 45 H 0.04 1.59 7.03 -2.38 -0.02 1.58 16 46 H 0.08 2.16 7.85 -2.39 -0.02 2.14 16 Total: -1.00 -94.11 371.34 3.42 -90.69 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.34 Total: 9.99 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.77 Total: -5.13 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.39 Total: -79.07 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -2.27 Total: -71.93 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.96 Total: 55.45 kcal Total: -94.11 3.42 -90.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362582357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.311 kcal (2) G-P(sol) polarization free energy of solvation -94.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds