Wall clock time and date at job start Tue Mar 31 2020 19:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00374 * 2 1 4 4 C 1.50694 * 109.46851 * 180.02562 * 3 2 1 5 5 N 1.30719 * 125.52708 * 269.95622 * 4 3 2 6 6 N 1.40441 * 106.79234 * 179.78881 * 5 4 3 7 7 H 0.97004 * 126.81993 * 180.25436 * 6 5 4 8 8 C 1.34430 * 106.35428 * 0.40708 * 6 5 4 9 9 C 1.50703 * 125.95904 * 179.85901 * 8 6 5 10 10 N 1.46509 * 109.46993 * 94.71500 * 9 8 6 11 11 C 1.34777 * 119.99703 * 179.97438 * 10 9 8 12 12 O 1.21589 * 120.00263 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.40193 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.40401 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86868 * 179.97438 * 15 14 13 17 17 N 1.34965 * 107.85999 * 359.97438 * 16 15 14 18 18 C 1.46493 * 125.97624 * 179.97438 * 17 16 15 19 19 C 1.50710 * 109.46991 * 125.02899 * 18 17 16 20 20 H 1.08002 * 119.99873 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00357 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47303 * 59.99738 * 23 21 19 25 25 H 1.48498 * 109.47708 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47083 * 300.00249 * 23 21 19 27 27 N 1.31214 * 125.96986 * 179.97438 * 14 13 11 28 28 N 1.30825 * 108.07675 * 359.59272 * 8 6 5 29 29 H 1.08992 * 109.47580 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46617 * 300.00183 * 1 2 3 31 31 H 1.09005 * 109.46647 * 59.99600 * 1 2 3 32 32 H 1.09002 * 109.46873 * 59.99980 * 3 2 1 33 33 H 1.09000 * 109.46804 * 300.00105 * 3 2 1 34 34 H 1.09000 * 109.47065 * 334.71403 * 9 8 6 35 35 H 1.08996 * 109.47026 * 214.70689 * 9 8 6 36 36 H 0.96999 * 119.99737 * 359.97438 * 10 9 8 37 37 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 38 38 H 1.07998 * 126.06449 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.07092 * 180.02562 * 16 15 14 40 40 H 1.09003 * 109.47538 * 245.02631 * 18 17 16 41 41 H 1.08999 * 109.47417 * 5.03540 * 18 17 16 42 42 H 0.96997 * 120.00114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2703 1.1268 1.0629 6 7 5.5955 1.0164 0.6113 7 1 6.3928 0.9489 1.1596 8 6 5.5398 1.0265 -0.7318 9 6 6.7178 0.9336 -1.6672 10 7 6.9165 -0.4624 -2.0649 11 6 7.9194 -0.7876 -2.9045 12 8 8.6588 0.0776 -3.3324 13 7 8.1026 -2.0719 -3.2700 14 6 9.1454 -2.4100 -4.1439 15 6 10.0688 -1.5171 -4.7106 16 6 10.9107 -2.2312 -5.4919 17 7 10.5388 -3.5268 -5.4250 18 6 11.1820 -4.6438 -6.1212 19 6 11.5753 -5.6999 -5.1205 20 1 11.3666 -5.5537 -4.0710 21 6 12.2015 -6.8526 -5.5448 22 7 12.4552 -7.0308 -6.8229 23 14 12.6896 -8.1612 -4.3045 24 1 11.4783 -8.6502 -3.5982 25 1 13.3415 -9.2936 -5.0101 26 1 13.6365 -7.5804 -3.3189 27 7 9.4296 -3.6165 -4.5742 28 7 4.2840 1.1253 -1.0853 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 7.6122 1.2984 -1.1623 35 1 6.5273 1.5399 -2.5527 36 1 6.3264 -1.1526 -1.7239 37 1 7.5124 -2.7620 -2.9290 38 1 10.1015 -0.4496 -4.5504 39 1 11.7348 -1.8350 -6.0667 40 1 10.4868 -5.0698 -6.8447 41 1 12.0714 -4.2853 -6.6394 42 1 12.8954 -7.8419 -7.1215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364252409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:57 Heat of formation + Delta-G solvation = 108.659853 kcal Electronic energy + Delta-G solvation = -26757.190748 eV Core-core repulsion = 22584.201267 eV Total energy + Delta-G solvation = -4172.989482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77337 -40.75725 -39.61875 -38.31416 -35.62703 -34.68938 -33.44378 -33.29869 -32.17883 -30.86837 -29.32008 -28.84037 -27.50531 -26.42404 -26.17321 -23.19382 -22.21347 -21.70365 -21.12730 -20.47192 -19.93588 -18.71155 -17.97968 -17.18109 -16.90677 -16.57048 -16.20355 -16.08260 -15.98409 -15.74711 -15.37944 -14.86054 -14.74654 -14.29931 -14.09807 -13.81496 -13.55380 -13.08165 -12.85084 -12.79740 -12.50599 -12.31601 -12.21532 -11.98864 -11.77430 -11.07482 -10.87002 -10.70870 -10.63247 -10.49229 -10.35426 -10.24777 -10.24097 -10.08994 -9.73066 -9.55471 -9.45700 -8.62377 -8.11822 -7.43489 -6.23606 -4.28727 0.83560 1.91383 1.96528 2.51462 2.61823 3.05586 3.12926 3.25685 3.29121 3.33288 3.56644 3.66879 3.80028 4.03875 4.17034 4.24405 4.35363 4.69350 4.72404 4.89061 4.91387 5.06757 5.11441 5.15805 5.23731 5.50900 5.60273 5.74600 5.77803 5.94594 6.20826 6.41099 6.49393 6.53178 6.54839 6.83840 6.96367 7.08912 7.45792 7.48594 7.68927 7.77941 7.92976 8.06387 8.45829 8.65145 8.80746 9.36769 10.85032 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.001794 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.271537 B =15602.145811 C =16343.470859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.157 3.843 4 C 0.226 3.774 5 N -0.285 5.285 6 N -0.465 5.465 7 H 0.446 0.554 8 C 0.271 3.729 9 C 0.224 3.776 10 N -0.742 5.742 11 C 0.720 3.280 12 O -0.563 6.563 13 N -0.640 5.640 14 C 0.274 3.726 15 C -0.286 4.286 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.258 3.742 19 C -0.529 4.529 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.306 5.306 28 N -0.507 5.507 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.402 0.598 37 H 0.408 0.592 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.668 18.672 13.874 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.078 3.922 4 C -0.057 4.057 5 N -0.117 5.117 6 N -0.185 5.185 7 H 0.293 0.707 8 C -0.009 4.009 9 C 0.097 3.903 10 N -0.401 5.401 11 C 0.419 3.581 12 O -0.438 6.438 13 N -0.290 5.290 14 C 0.020 3.980 15 C -0.317 4.317 16 C -0.098 4.098 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.137 5.137 28 N -0.236 5.236 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.236 0.764 37 H 0.243 0.757 38 H 0.179 0.821 39 H 0.185 0.815 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.529 17.886 13.675 29.159 hybrid contribution 0.420 -0.539 1.219 1.398 sum -18.109 17.346 14.895 29.166 Atomic orbital electron populations 1.22806 0.79747 1.03418 1.00363 1.87943 1.20474 1.26250 1.95532 1.20426 0.83031 0.86080 1.02618 1.23782 0.97082 0.99163 0.85644 1.78046 0.87088 1.24316 1.22211 1.48089 1.08431 1.55572 1.06399 0.70721 1.24261 0.94957 0.97687 0.83976 1.19458 0.90750 0.83797 0.96328 1.44823 1.34512 1.08820 1.51975 1.15421 0.81025 0.82407 0.79259 1.90894 1.46960 1.47741 1.58229 1.41294 1.32103 1.07591 1.47965 1.18756 0.91143 0.92746 0.95330 1.21499 1.00537 1.01485 1.08214 1.22562 1.00731 0.85108 1.01448 1.49064 1.20787 1.07018 1.33265 1.19739 0.92327 0.81801 0.92033 1.21219 1.39094 1.02158 0.94259 0.91372 1.24939 0.95330 0.98123 0.95679 1.69907 1.41762 1.27727 1.13936 0.86386 0.78843 0.80431 0.80818 1.19970 1.21054 1.20068 1.77338 1.06094 1.17467 1.12813 1.70384 0.99775 1.22594 1.30841 0.89087 0.93669 0.93468 0.90519 0.89916 0.88553 0.87119 0.76406 0.75707 0.82126 0.81491 0.93720 0.92501 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.47 10.69 -35.23 -0.38 -3.85 16 3 C 0.16 1.19 6.56 36.00 0.24 1.42 16 4 C 0.23 2.27 7.77 -156.85 -1.22 1.05 16 5 N -0.29 -2.81 12.80 32.42 0.41 -2.39 16 6 N -0.47 -3.36 7.45 32.62 0.24 -3.11 16 7 H 0.45 1.79 8.96 -182.33 -1.63 0.16 16 8 C 0.27 2.20 7.61 -155.70 -1.18 1.02 16 9 C 0.22 1.67 6.30 -5.19 -0.03 1.63 16 10 N -0.74 -6.76 5.55 -66.41 -0.37 -7.13 16 11 C 0.72 9.72 8.53 -86.92 -0.74 8.97 16 12 O -0.56 -9.24 13.47 5.29 0.07 -9.17 16 13 N -0.64 -9.55 5.46 -15.51 -0.08 -9.64 16 14 C 0.27 5.40 8.11 -154.36 -1.25 4.15 16 15 C -0.29 -5.56 9.61 -39.83 -0.38 -5.94 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 18 C 0.26 6.54 6.26 -5.19 -0.03 6.50 16 19 C -0.53 -14.66 9.24 -34.44 -0.32 -14.97 16 20 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -25.25 13.29 55.43 0.74 -24.51 16 23 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.31 -6.97 12.42 31.44 0.39 -6.58 16 28 N -0.51 -5.28 11.19 -8.16 -0.09 -5.37 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 3.07 8.48 -40.82 -0.35 2.73 16 37 H 0.41 4.99 8.84 -40.82 -0.36 4.63 16 38 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 39 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 40 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -36.10 374.28 -9.20 -45.30 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.42 Total: 4.58 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -4.11 Total: 7.54 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: 1.01 Total: -66.32 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.31 Total: -13.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.10 -9.20 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364252409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.962 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds