Wall clock time and date at job start Tue Mar 31 2020 19:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00374 * 2 1 4 4 C 1.50694 * 109.46851 * 180.02562 * 3 2 1 5 5 N 1.30719 * 125.52708 * 269.95622 * 4 3 2 6 6 N 1.40441 * 106.79234 * 179.78881 * 5 4 3 7 7 H 0.97004 * 126.81993 * 180.25436 * 6 5 4 8 8 C 1.34430 * 106.35428 * 0.40708 * 6 5 4 9 9 C 1.50703 * 125.95904 * 179.85901 * 8 6 5 10 10 N 1.46509 * 109.46993 * 94.71500 * 9 8 6 11 11 C 1.34777 * 119.99703 * 179.97438 * 10 9 8 12 12 O 1.21589 * 120.00263 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99754 * 179.97438 * 11 10 9 14 14 C 1.40193 * 119.99728 * 179.97438 * 13 11 10 15 15 C 1.40401 * 125.97600 * 0.02562 * 14 13 11 16 16 C 1.35244 * 107.86868 * 179.97438 * 15 14 13 17 17 N 1.34965 * 107.85999 * 359.97438 * 16 15 14 18 18 C 1.46493 * 125.97624 * 179.97438 * 17 16 15 19 19 C 1.50710 * 109.46991 * 125.02899 * 18 17 16 20 20 H 1.08002 * 119.99873 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99950 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00357 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47303 * 59.99738 * 23 21 19 25 25 H 1.48498 * 109.47708 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47083 * 300.00249 * 23 21 19 27 27 N 1.31214 * 125.96986 * 179.97438 * 14 13 11 28 28 N 1.30825 * 108.07675 * 359.59272 * 8 6 5 29 29 H 1.08992 * 109.47580 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46617 * 300.00183 * 1 2 3 31 31 H 1.09005 * 109.46647 * 59.99600 * 1 2 3 32 32 H 1.09002 * 109.46873 * 59.99980 * 3 2 1 33 33 H 1.09000 * 109.46804 * 300.00105 * 3 2 1 34 34 H 1.09000 * 109.47065 * 334.71403 * 9 8 6 35 35 H 1.08996 * 109.47026 * 214.70689 * 9 8 6 36 36 H 0.96999 * 119.99737 * 359.97438 * 10 9 8 37 37 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 38 38 H 1.07998 * 126.06449 * 0.02562 * 15 14 13 39 39 H 1.07999 * 126.07092 * 180.02562 * 16 15 14 40 40 H 1.09003 * 109.47538 * 245.02631 * 18 17 16 41 41 H 1.08999 * 109.47417 * 5.03540 * 18 17 16 42 42 H 0.96997 * 120.00114 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 7 4.2703 1.1268 1.0629 6 7 5.5955 1.0164 0.6113 7 1 6.3928 0.9489 1.1596 8 6 5.5398 1.0265 -0.7318 9 6 6.7178 0.9336 -1.6672 10 7 6.9165 -0.4624 -2.0649 11 6 7.9194 -0.7876 -2.9045 12 8 8.6588 0.0776 -3.3324 13 7 8.1026 -2.0719 -3.2700 14 6 9.1454 -2.4100 -4.1439 15 6 10.0688 -1.5171 -4.7106 16 6 10.9107 -2.2312 -5.4919 17 7 10.5388 -3.5268 -5.4250 18 6 11.1820 -4.6438 -6.1212 19 6 11.5753 -5.6999 -5.1205 20 1 11.3666 -5.5537 -4.0710 21 6 12.2015 -6.8526 -5.5448 22 7 12.4552 -7.0308 -6.8229 23 14 12.6896 -8.1612 -4.3045 24 1 11.4783 -8.6502 -3.5982 25 1 13.3415 -9.2936 -5.0101 26 1 13.6365 -7.5804 -3.3189 27 7 9.4296 -3.6165 -4.5742 28 7 4.2840 1.1253 -1.0853 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 7.6122 1.2984 -1.1623 35 1 6.5273 1.5399 -2.5527 36 1 6.3264 -1.1526 -1.7239 37 1 7.5124 -2.7620 -2.9290 38 1 10.1015 -0.4496 -4.5504 39 1 11.7348 -1.8350 -6.0667 40 1 10.4868 -5.0698 -6.8447 41 1 12.0714 -4.2853 -6.6394 42 1 12.8954 -7.8419 -7.1215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364252409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:56 Heat of formation + Delta-G solvation = 81.077907 kcal Electronic energy + Delta-G solvation = -26758.386791 eV Core-core repulsion = 22584.201267 eV Total energy + Delta-G solvation = -4174.185525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43933 -42.19556 -40.87958 -38.85084 -36.63491 -35.98831 -35.25621 -34.03825 -33.12240 -32.43954 -30.90751 -29.47025 -28.67873 -27.82396 -26.65486 -24.99116 -23.27343 -22.60518 -21.96069 -21.79035 -21.28908 -19.60434 -18.93288 -18.66441 -18.21742 -17.71813 -17.31708 -16.89143 -16.69611 -16.61454 -16.45683 -16.14971 -15.84535 -15.73491 -15.53525 -14.75438 -14.44682 -14.42495 -14.15370 -13.76623 -13.65737 -13.57386 -13.29499 -13.13338 -12.92571 -12.71312 -12.42639 -12.26316 -12.06639 -11.63939 -11.40320 -11.36802 -11.32070 -11.20667 -10.88105 -10.73620 -10.70361 -10.38025 -9.70058 -9.03528 -8.30870 -6.44978 0.15159 1.01874 1.12237 1.38478 1.39229 1.41199 1.49473 1.55765 1.71432 2.17573 2.37594 2.41122 2.54661 3.00630 3.09192 3.14650 3.43134 3.62142 4.00248 4.20680 4.23003 4.31705 4.47705 4.52432 4.54255 4.62441 4.78933 4.89892 4.92473 4.96636 4.97954 5.03030 5.05572 5.07997 5.31511 5.58250 5.71661 5.86146 5.93683 5.99481 6.09096 6.32523 6.63016 6.70451 6.82713 7.14517 7.24786 7.35444 8.76244 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.001794 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.271537 B =15602.145811 C =16343.470859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.415 6.415 3 C 0.155 3.845 4 C 0.213 3.787 5 N -0.304 5.304 6 N -0.452 5.452 7 H 0.460 0.540 8 C 0.278 3.722 9 C 0.226 3.774 10 N -0.722 5.722 11 C 0.723 3.277 12 O -0.590 6.590 13 N -0.636 5.636 14 C 0.284 3.716 15 C -0.290 4.290 16 C 0.056 3.944 17 N -0.345 5.345 18 C 0.272 3.728 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.971 3.029 24 H -0.274 1.274 25 H -0.274 1.274 26 H -0.269 1.269 27 N -0.350 5.350 28 N -0.533 5.533 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.411 0.589 37 H 0.420 0.580 38 H 0.172 0.828 39 H 0.201 0.799 40 H 0.020 0.980 41 H 0.059 0.941 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.979 19.490 15.266 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C 0.076 3.924 4 C -0.069 4.069 5 N -0.136 5.136 6 N -0.173 5.173 7 H 0.309 0.691 8 C -0.002 4.002 9 C 0.100 3.900 10 N -0.381 5.381 11 C 0.422 3.578 12 O -0.467 6.467 13 N -0.287 5.287 14 C 0.029 3.971 15 C -0.321 4.321 16 C -0.093 4.093 17 N -0.127 5.127 18 C 0.154 3.846 19 C -0.585 4.585 20 H 0.071 0.929 21 C -0.182 4.182 22 N -0.559 5.559 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.199 1.199 26 H -0.194 1.194 27 N -0.181 5.181 28 N -0.264 5.264 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.247 0.753 37 H 0.257 0.743 38 H 0.189 0.811 39 H 0.218 0.782 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.878 18.729 15.117 30.589 hybrid contribution 0.421 -0.662 0.838 1.148 sum -18.457 18.067 15.955 30.359 Atomic orbital electron populations 1.22986 0.78034 1.04138 1.01655 1.87885 1.22467 1.27233 1.95791 1.20607 0.81866 0.85867 1.04013 1.24261 0.98195 0.99014 0.85479 1.77995 0.87985 1.24887 1.22719 1.48020 1.08348 1.54651 1.06304 0.69058 1.24210 0.94533 0.97202 0.84249 1.19605 0.91414 0.82499 0.96474 1.44647 1.33077 1.09964 1.50371 1.15462 0.81457 0.81460 0.79423 1.90869 1.48224 1.48234 1.59370 1.41318 1.31308 1.08730 1.47333 1.19055 0.91504 0.91928 0.94626 1.21704 1.00420 1.01830 1.08117 1.23180 1.01236 0.83818 1.01034 1.48801 1.21847 1.07447 1.34634 1.19323 0.91747 0.82255 0.91313 1.21382 1.39709 1.03484 0.93974 0.92896 1.25731 0.95049 0.99961 0.97489 1.69988 1.42075 1.28455 1.15376 0.85415 0.78493 0.77980 0.78620 1.19940 1.19886 1.19435 1.77253 1.07063 1.19327 1.14424 1.70371 1.00744 1.23586 1.31649 0.88723 0.92165 0.92375 0.88782 0.88810 0.86225 0.87200 0.75258 0.74290 0.81113 0.78238 0.96166 0.92303 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.19 10.69 -148.98 -1.59 -8.78 16 3 C 0.16 2.18 6.56 71.23 0.47 2.65 16 4 C 0.21 4.07 7.77 138.63 1.08 5.14 16 5 N -0.30 -5.62 12.80 -51.34 -0.66 -6.27 16 6 N -0.45 -5.73 7.45 -50.71 -0.38 -6.11 16 7 H 0.46 2.74 8.96 -213.10 -1.91 0.83 16 8 C 0.28 4.03 7.61 138.23 1.05 5.08 16 9 C 0.23 2.87 6.30 85.63 0.54 3.41 16 10 N -0.72 -11.64 5.55 -482.27 -2.68 -14.32 16 11 C 0.72 18.23 8.53 179.05 1.53 19.76 16 12 O -0.59 -18.30 13.47 -4.00 -0.05 -18.36 16 13 N -0.64 -18.21 5.46 -321.23 -1.75 -19.97 16 14 C 0.28 11.04 8.11 133.31 1.08 12.12 16 15 C -0.29 -10.95 9.61 22.11 0.21 -10.74 16 16 C 0.06 2.15 11.44 83.52 0.96 3.11 16 17 N -0.35 -16.07 3.67 -351.84 -1.29 -17.36 16 18 C 0.27 14.10 6.26 85.64 0.54 14.63 16 19 C -0.55 -30.79 9.24 25.60 0.24 -30.56 16 20 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 21 C 0.02 1.00 5.46 84.65 0.46 1.46 16 22 N -0.92 -52.11 13.29 21.44 0.28 -51.82 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 N -0.35 -16.08 12.42 -54.43 -0.68 -16.75 16 28 N -0.53 -10.48 11.19 -179.73 -2.01 -12.49 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 5.42 8.48 -92.71 -0.79 4.63 16 37 H 0.42 9.80 8.84 -92.71 -0.82 8.98 16 38 H 0.17 6.14 5.91 -2.91 -0.02 6.13 16 39 H 0.20 6.06 8.06 -2.91 -0.02 6.04 16 40 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.61 374.28 -1.79 -79.40 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -2.40 Total: 19.75 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 9.39 Total: 27.56 kcal Atomic # 7 Polarization: -135.94 SS G_CDS: -9.16 Total: -145.09 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.65 Total: -27.14 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -77.61 -1.79 -79.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364252409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.478 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds