Wall clock time and date at job start Tue Mar 31 2020 19:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99473 * 2 1 4 4 O 1.20815 * 120.00278 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99584 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46856 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47165 * 178.02587 * 6 5 3 8 8 C 1.36943 * 119.99482 * 273.66294 * 7 6 5 9 9 H 1.07995 * 120.00094 * 351.67661 * 8 7 6 10 10 C 1.38813 * 119.99568 * 171.67931 * 8 7 6 11 11 N 1.31621 * 120.00117 * 42.24545 * 10 8 7 12 12 Si 1.86805 * 119.99748 * 222.24659 * 10 8 7 13 13 H 1.48495 * 109.47169 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47045 * 120.00418 * 12 10 8 15 15 H 1.48506 * 109.46943 * 240.00151 * 12 10 8 16 16 C 1.46494 * 120.00655 * 93.65766 * 7 6 5 17 17 C 1.53008 * 109.47007 * 82.94385 * 16 7 6 18 18 O 1.45199 * 109.46506 * 65.17330 * 17 16 7 19 19 C 1.34235 * 116.99783 * 179.97438 * 18 17 16 20 20 O 1.20822 * 119.99459 * 0.02562 * 19 18 17 21 21 C 1.50699 * 120.00199 * 179.97438 * 19 18 17 22 22 C 1.50694 * 109.47085 * 180.02562 * 21 19 18 23 23 C 1.38231 * 120.00280 * 90.00412 * 22 21 19 24 24 C 1.38236 * 120.00070 * 179.97438 * 23 22 21 25 25 C 1.38236 * 119.99980 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99740 * 0.27075 * 25 24 23 27 27 C 1.38232 * 120.00044 * 359.51775 * 26 25 24 28 28 H 1.09000 * 109.46991 * 60.00398 * 1 2 3 29 29 H 1.09005 * 109.46427 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47187 * 299.99744 * 1 2 3 31 31 H 1.09001 * 109.46884 * 59.99626 * 5 3 2 32 32 H 1.08999 * 109.47019 * 299.99656 * 5 3 2 33 33 H 1.09001 * 109.47639 * 58.01789 * 6 5 3 34 34 H 1.09007 * 109.46518 * 298.01969 * 6 5 3 35 35 H 0.96999 * 119.99682 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.47203 * 322.95321 * 16 7 6 37 37 H 1.08998 * 109.47772 * 202.95182 * 16 7 6 38 38 H 1.08994 * 109.47068 * 305.17644 * 17 16 7 39 39 H 1.09003 * 109.46744 * 185.16942 * 17 16 7 40 40 H 1.08999 * 109.46837 * 60.00188 * 21 19 18 41 41 H 1.09003 * 109.46734 * 300.00636 * 21 19 18 42 42 H 1.08003 * 119.99780 * 359.97256 * 23 22 21 43 43 H 1.08001 * 119.99840 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99763 * 180.02562 * 25 24 23 45 45 H 1.08003 * 119.99463 * 179.72634 * 26 25 24 46 46 H 1.08005 * 119.99853 * 180.27003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 7 5.4622 2.8192 0.0493 8 6 6.1099 2.7908 1.2555 9 1 5.5442 2.8473 2.1736 10 6 7.4937 2.6893 1.2979 11 7 8.2309 3.3900 0.4625 12 14 8.3095 1.5583 2.5408 13 1 7.2673 0.8879 3.3589 14 1 9.1129 0.5345 1.8257 15 1 9.1972 2.3542 3.4263 16 6 6.2315 2.9265 -1.1928 17 6 6.2711 4.3881 -1.6435 18 8 7.0078 5.1747 -0.6704 19 6 7.1358 6.4876 -0.9193 20 8 6.6480 6.9636 -1.9169 21 6 7.8868 7.3678 0.0462 22 6 7.8842 8.7867 -0.4614 23 6 6.8673 9.6493 -0.0971 24 6 6.8653 10.9510 -0.5623 25 6 7.8805 11.3903 -1.3915 26 6 8.8946 10.5262 -1.7598 27 6 8.8990 9.2258 -1.2911 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7811 0.8909 33 1 3.5808 3.2448 0.8727 34 1 3.6404 3.2276 -0.9062 35 1 9.1978 3.3194 0.4924 36 1 5.7592 2.3206 -1.9662 37 1 7.2477 2.5709 -1.0228 38 1 5.2539 4.7709 -1.7250 39 1 6.7638 4.4559 -2.6135 40 1 8.9143 7.0153 0.1353 41 1 7.4039 7.3306 1.0227 42 1 6.0744 9.3062 0.5510 43 1 6.0706 11.6248 -0.2780 44 1 7.8791 12.4074 -1.7546 45 1 9.6854 10.8681 -2.4112 46 1 9.6937 8.5519 -1.5754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460646100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:09 Heat of formation + Delta-G solvation = -121.894281 kcal Electronic energy + Delta-G solvation = -28672.573757 eV Core-core repulsion = 24528.541539 eV Total energy + Delta-G solvation = -4144.032218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42804 -41.23100 -39.85660 -38.24056 -37.45979 -36.65091 -33.92846 -33.88668 -32.14136 -31.77347 -30.25978 -28.70090 -28.44159 -26.15926 -24.63399 -23.46839 -23.11659 -22.23356 -21.36680 -21.05581 -18.86823 -18.55767 -18.35861 -17.70853 -17.53123 -17.47533 -17.16366 -16.77889 -16.42598 -16.00638 -15.91088 -15.60860 -15.22782 -14.88998 -14.51563 -14.29199 -14.17082 -14.01502 -13.82322 -13.63157 -13.57145 -13.21295 -13.12565 -12.96687 -12.88460 -12.71034 -12.61917 -12.24555 -12.01025 -11.95852 -11.87274 -11.79281 -11.66211 -11.56225 -11.48780 -11.22624 -11.12419 -10.03806 -9.80140 -9.66160 -8.93569 -7.81316 -4.89594 0.39532 0.52100 1.22551 1.48813 1.52789 1.64950 1.69919 1.83215 2.22941 2.65440 2.97455 3.24658 3.62011 3.71638 3.93852 4.00168 4.16266 4.20776 4.22196 4.28979 4.32975 4.34971 4.36001 4.37065 4.44517 4.59380 4.60884 4.69232 4.70460 4.74785 4.77371 4.78597 4.97179 5.03034 5.12419 5.16673 5.23723 5.44475 5.56174 5.61262 5.65134 5.68926 5.86596 6.00946 6.13603 6.36416 6.78309 7.15636 7.25166 7.96520 8.41049 9.20034 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.002959 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.120202 B = 9460.811578 C =11259.954440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.470 3.530 4 O -0.543 6.543 5 C -0.122 4.122 6 C 0.171 3.829 7 N -0.599 5.599 8 C -0.289 4.289 9 H 0.066 0.934 10 C 0.003 3.997 11 N -0.842 5.842 12 Si 0.900 3.100 13 H -0.282 1.282 14 H -0.293 1.293 15 H -0.304 1.304 16 C 0.146 3.854 17 C 0.066 3.934 18 O -0.274 6.274 19 C 0.442 3.558 20 O -0.563 6.563 21 C -0.065 4.065 22 C -0.085 4.085 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.061 0.939 29 H 0.132 0.868 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.249 0.751 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.048 0.952 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 4.679 -3.442 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.315 3.685 4 O -0.433 6.433 5 C -0.162 4.162 6 C 0.043 3.957 7 N -0.320 5.320 8 C -0.416 4.416 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.483 5.483 12 Si 0.729 3.271 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.232 1.232 16 C 0.020 3.980 17 C -0.011 4.011 18 O -0.186 6.186 19 C 0.288 3.712 20 O -0.458 6.458 21 C -0.102 4.102 22 C -0.085 4.085 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.876 5.071 -3.744 7.400 hybrid contribution 0.149 -0.572 0.641 0.872 sum -3.727 4.499 -3.104 6.615 Atomic orbital electron populations 1.23529 0.75170 1.05594 1.02361 1.86543 1.24874 1.33097 1.83811 1.24258 0.92604 0.80975 0.70668 1.90620 1.68082 1.37425 1.47222 1.22111 0.85099 1.02541 1.06479 1.20399 0.83390 0.92245 0.99636 1.44200 1.00369 1.84562 1.02862 1.18989 0.89904 1.47702 0.85033 0.91624 1.24989 0.96257 0.99857 0.98676 1.70600 1.04253 1.33419 1.40061 0.86293 0.78281 0.82177 0.80344 1.20714 1.21982 1.23198 1.21490 0.99416 0.90215 0.86837 1.23605 0.92737 0.94857 0.89873 1.87213 1.66002 1.17361 1.47990 1.24270 0.77641 0.83742 0.85591 1.90551 1.48546 1.76453 1.30242 1.20212 1.02622 0.89587 0.97815 1.19504 0.96423 0.93634 0.98944 1.21229 0.97630 0.94692 1.00748 1.21422 0.99565 0.95435 0.97987 1.21521 0.94134 1.00896 0.97641 1.21437 0.99723 0.93137 0.99976 1.21239 0.98548 0.97168 0.97019 0.92009 0.84962 0.92286 0.86699 0.87469 0.94698 0.93476 0.94139 0.91739 0.88745 0.95061 0.93341 0.86311 0.86927 0.86191 0.83828 0.83206 0.83597 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.71 16 2 O -0.37 -9.87 10.57 -51.45 -0.54 -10.41 16 3 C 0.47 14.92 7.96 71.24 0.57 15.48 16 4 O -0.54 -20.12 15.72 22.00 0.35 -19.78 16 5 C -0.12 -3.92 6.12 29.85 0.18 -3.74 16 6 C 0.17 6.68 4.99 86.38 0.43 7.11 16 7 N -0.60 -26.77 2.49 -702.00 -1.75 -28.52 16 8 C -0.29 -14.39 9.47 84.03 0.80 -13.60 16 9 H 0.07 3.38 8.06 -2.91 -0.02 3.36 16 10 C 0.00 0.13 4.74 84.86 0.40 0.53 16 11 N -0.84 -42.19 8.37 21.65 0.18 -42.01 16 12 Si 0.90 40.40 29.69 68.60 2.04 42.44 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 16 C 0.15 6.21 5.55 86.38 0.48 6.69 16 17 C 0.07 2.87 5.79 71.98 0.42 3.28 16 18 O -0.27 -12.68 7.41 -51.47 -0.38 -13.07 16 19 C 0.44 18.64 7.95 71.24 0.57 19.20 16 20 O -0.56 -25.78 15.78 21.97 0.35 -25.43 16 21 C -0.06 -2.20 5.94 29.10 0.17 -2.03 16 22 C -0.08 -2.65 4.37 -19.87 -0.09 -2.74 16 23 C -0.12 -3.61 9.70 22.27 0.22 -3.39 16 24 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 25 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 26 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 27 C -0.12 -3.41 9.70 22.27 0.22 -3.19 16 28 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 29 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 31 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 34 H 0.05 1.81 7.96 -2.38 -0.02 1.80 16 35 H 0.25 12.19 8.31 -92.71 -0.77 11.42 16 36 H 0.06 2.33 8.12 -2.38 -0.02 2.31 16 37 H 0.09 4.47 5.27 -2.39 -0.01 4.46 16 38 H 0.03 1.37 8.05 -2.39 -0.02 1.35 16 39 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 40 H 0.12 3.75 8.09 -2.39 -0.02 3.73 16 41 H 0.11 3.66 8.09 -2.39 -0.02 3.64 16 42 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 44 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -64.65 393.37 7.43 -57.23 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.97 Total: 22.08 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 6.23 Total: 17.47 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -1.57 Total: -70.53 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -0.23 Total: -68.69 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.04 Total: 42.44 kcal Total: -64.65 7.43 -57.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460646100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.669 kcal (2) G-P(sol) polarization free energy of solvation -64.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds