Wall clock time and date at job start Tue Mar 31 2020 19:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00704 * 2 1 4 4 C 1.52999 * 109.47659 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47466 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47128 * 54.99786 * 5 4 3 7 7 N 1.46506 * 109.46836 * 295.00181 * 5 4 3 8 8 C 1.34776 * 119.99899 * 155.00401 * 7 5 4 9 9 O 1.21290 * 119.99966 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00271 * 180.02562 * 8 7 5 11 11 H 1.09008 * 109.46418 * 299.99351 * 10 8 7 12 12 C 1.50695 * 109.47352 * 59.99009 * 10 8 7 13 13 H 1.08000 * 120.00485 * 235.35677 * 12 10 8 14 14 C 1.37882 * 119.99738 * 55.34922 * 12 10 8 15 15 N 1.31510 * 120.00219 * 1.98268 * 14 12 10 16 16 Si 1.86804 * 119.99794 * 181.97419 * 14 12 10 17 17 H 1.48502 * 109.47000 * 60.00453 * 16 14 12 18 18 H 1.48495 * 109.46822 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47324 * 300.00300 * 16 14 12 20 20 C 1.50694 * 109.47286 * 179.97438 * 10 8 7 21 21 C 1.38240 * 119.99722 * 226.93832 * 20 10 8 22 22 C 1.38231 * 119.99728 * 179.78731 * 21 20 10 23 23 C 1.38233 * 120.00111 * 0.44147 * 22 21 20 24 24 C 1.38231 * 120.00163 * 359.80964 * 23 22 21 25 25 C 1.38233 * 120.00360 * 47.21222 * 20 10 8 26 26 C 1.50694 * 109.47469 * 175.00070 * 5 4 3 27 27 O 1.20825 * 120.00269 * 119.99838 * 26 5 4 28 28 O 1.34239 * 119.99859 * 300.00003 * 26 5 4 29 29 C 1.45201 * 116.99737 * 179.97438 * 28 26 5 30 30 H 1.09005 * 109.46929 * 300.00169 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99492 * 1 2 3 32 32 H 1.08998 * 109.47678 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47073 * 59.99513 * 3 2 1 34 34 H 1.09007 * 109.47025 * 300.00372 * 3 2 1 35 35 H 1.08998 * 109.46818 * 59.99647 * 4 3 2 36 36 H 1.09003 * 109.46683 * 300.00264 * 4 3 2 37 37 H 0.96994 * 119.99866 * 334.99613 * 7 5 4 38 38 H 0.97000 * 120.00169 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.99817 * 359.97438 * 21 20 10 40 40 H 1.08007 * 119.99641 * 180.27263 * 22 21 20 41 41 H 1.08004 * 119.99862 * 179.83404 * 23 22 21 42 42 H 1.08001 * 120.00473 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00079 * 359.97389 * 25 20 10 44 44 H 1.09004 * 109.46596 * 179.97438 * 29 28 26 45 45 H 1.08996 * 109.47225 * 300.00136 * 29 28 26 46 46 H 1.09003 * 109.46889 * 60.00611 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1580 2.5821 0.0000 6 1 3.7676 3.1533 0.8423 7 7 3.8228 3.2665 -1.2513 8 6 3.8024 4.6132 -1.2983 9 8 4.0611 5.2587 -0.3045 10 6 3.4572 5.3173 -2.5852 11 1 4.1754 5.0378 -3.3561 12 6 2.0713 4.9167 -3.0208 13 1 1.9137 4.4996 -4.0045 14 6 1.0043 5.0825 -2.1634 15 7 1.1897 5.6261 -0.9803 16 14 -0.7047 4.5351 -2.6823 17 1 -0.6934 3.0769 -2.9631 18 1 -1.6692 4.8218 -1.5902 19 1 -1.1101 5.2717 -3.9062 20 6 3.5046 6.8081 -2.3706 21 6 2.4730 7.6056 -2.8299 22 6 2.5144 8.9727 -2.6292 23 6 3.5916 9.5433 -1.9773 24 6 4.6256 8.7464 -1.5227 25 6 4.5822 7.3788 -1.7196 26 6 5.6553 2.4652 0.1232 27 8 6.3693 2.9080 -0.7451 28 8 6.1958 1.8690 1.1976 29 6 7.6449 1.7916 1.2492 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8567 0.6437 -0.8908 36 1 3.8574 0.6434 0.8891 37 1 3.6157 2.7503 -2.0459 38 1 0.4390 5.7431 -0.3773 39 1 1.6334 7.1602 -3.3428 40 1 1.7064 9.5952 -2.9841 41 1 3.6252 10.6117 -1.8229 42 1 5.4670 9.1921 -1.0130 43 1 5.3900 6.7562 -1.3644 44 1 7.9493 1.2883 2.1669 45 1 8.0096 1.2309 0.3886 46 1 8.0633 2.7980 1.2312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468695773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:12 Heat of formation + Delta-G solvation = -140.722298 kcal Electronic energy + Delta-G solvation = -30395.649020 eV Core-core repulsion = 26250.800358 eV Total energy + Delta-G solvation = -4144.848662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42435 -38.95439 -37.94253 -37.40002 -36.18101 -34.80466 -33.65759 -31.20531 -30.77957 -29.66218 -28.47551 -27.41650 -26.64022 -25.30041 -23.89189 -22.07139 -21.33924 -21.08088 -20.13168 -19.35958 -17.56400 -16.96084 -16.77194 -16.26169 -16.06203 -15.90031 -15.58568 -15.19378 -14.90807 -14.85161 -14.72679 -14.01397 -13.66444 -13.55263 -13.25330 -13.15287 -12.92990 -12.50628 -12.21153 -12.11114 -12.06821 -11.95446 -11.67331 -11.65937 -11.31141 -11.16464 -11.05107 -10.93204 -10.84310 -10.64867 -10.49281 -10.24122 -10.05601 -9.68487 -9.52331 -9.42139 -8.77139 -8.42495 -8.29331 -7.68350 -7.39838 -6.18724 -4.35017 2.44846 2.55017 2.62567 2.78379 3.13605 3.22313 3.23822 3.81263 3.98568 4.17772 4.33869 4.96584 5.01638 5.02281 5.08324 5.12416 5.15828 5.22929 5.33322 5.42646 5.51683 5.56359 5.70082 5.71971 5.74719 5.86808 5.98682 6.05441 6.08181 6.11091 6.38308 6.51966 6.53855 6.69305 6.79631 6.90126 7.13613 7.21249 7.23808 7.24619 7.56739 7.63530 7.65757 7.77528 8.00548 8.16516 8.26781 8.47447 8.71881 9.30957 9.56379 10.81442 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.005655 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.852515 B = 4950.092675 C = 7606.158652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.062 3.938 4 C -0.115 4.115 5 C 0.167 3.833 6 H 0.123 0.877 7 N -0.715 5.715 8 C 0.561 3.439 9 O -0.542 6.542 10 C 0.058 3.942 11 H 0.060 0.940 12 C -0.540 4.540 13 H 0.067 0.933 14 C 0.075 3.925 15 N -0.842 5.842 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.014 4.014 21 C -0.065 4.065 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.100 4.100 26 C 0.450 3.550 27 O -0.494 6.494 28 O -0.363 6.363 29 C 0.036 3.964 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.404 0.596 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.565 -7.882 2.341 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.015 4.015 4 C -0.153 4.153 5 C 0.058 3.942 6 H 0.141 0.859 7 N -0.369 5.369 8 C 0.351 3.649 9 O -0.417 6.417 10 C 0.037 3.963 11 H 0.078 0.922 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.474 5.474 16 Si 0.709 3.291 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.015 4.015 21 C -0.082 4.082 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.118 4.118 26 C 0.290 3.710 27 O -0.380 6.380 28 O -0.279 6.279 29 C -0.058 4.058 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.013 -7.342 3.000 8.889 hybrid contribution -1.197 -0.160 -0.316 1.249 sum 2.815 -7.502 2.684 8.451 Atomic orbital electron populations 1.22706 0.81039 1.02237 1.00382 1.87769 1.19706 1.28372 1.95614 1.22513 0.92571 0.84246 1.02156 1.21624 0.94582 0.94375 1.04697 1.20120 0.85924 0.95113 0.93079 0.85905 1.45726 1.72613 1.07607 1.10928 1.21109 0.71816 0.80279 0.91721 1.90548 1.48550 1.65206 1.37424 1.17853 0.98130 0.89198 0.91096 0.92240 1.20684 0.89912 1.45465 1.01663 0.91443 1.25038 0.98833 0.94380 0.95007 1.70064 1.31534 1.38981 1.06870 0.86800 0.84316 0.79401 0.78542 1.20034 1.21238 1.19871 1.19777 0.92087 0.95549 0.94078 1.21129 0.97794 0.91667 0.97653 1.20981 0.97973 0.95681 1.01975 1.20768 0.95595 0.98189 1.01686 1.20817 0.98715 0.94283 1.02410 1.20990 0.98783 0.93899 0.98117 1.24726 0.93185 0.73995 0.79079 1.90640 1.62925 1.43818 1.40578 1.86521 1.24379 1.72351 1.44642 1.23194 0.77300 1.02524 1.02819 0.94138 0.93857 0.89905 0.92820 0.91383 0.90178 0.88956 0.76132 0.92412 0.85443 0.88060 0.88232 0.88150 0.87524 0.88430 0.92174 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.40 -5.76 10.70 -35.23 -0.38 -6.14 16 3 C 0.06 0.92 5.83 37.16 0.22 1.14 16 4 C -0.11 -1.58 5.09 -26.73 -0.14 -1.71 16 5 C 0.17 2.81 2.48 -69.08 -0.17 2.64 16 6 H 0.12 2.26 7.58 -51.93 -0.39 1.87 16 7 N -0.71 -13.74 3.96 -54.93 -0.22 -13.96 16 8 C 0.56 12.94 5.28 -10.99 -0.06 12.88 16 9 O -0.54 -14.08 13.62 5.55 0.08 -14.00 16 10 C 0.06 1.36 2.78 -94.08 -0.26 1.10 16 11 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 12 C -0.54 -12.63 7.11 -34.44 -0.24 -12.88 16 13 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.08 1.80 4.00 -17.82 -0.07 1.73 16 15 N -0.84 -21.73 10.89 55.43 0.60 -21.12 16 16 Si 0.88 18.82 29.54 -169.99 -5.02 13.80 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.01 -0.33 4.51 -104.63 -0.47 -0.80 16 21 C -0.06 -1.49 8.20 -39.58 -0.32 -1.82 16 22 C -0.15 -3.09 10.05 -39.59 -0.40 -3.49 16 23 C -0.14 -2.87 10.05 -39.59 -0.40 -3.27 16 24 C -0.14 -3.01 10.05 -39.59 -0.40 -3.40 16 25 C -0.10 -2.30 8.21 -39.58 -0.33 -2.63 16 26 C 0.45 7.76 7.29 36.00 0.26 8.02 16 27 O -0.49 -9.84 16.07 -18.75 -0.30 -10.14 16 28 O -0.36 -5.32 10.37 -39.28 -0.41 -5.73 16 29 C 0.04 0.40 10.56 101.05 1.07 1.47 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.14 7.75 -51.93 -0.40 0.74 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.14 7.99 -51.93 -0.42 0.72 16 37 H 0.40 7.14 8.49 -40.82 -0.35 6.79 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.13 3.03 6.04 -52.48 -0.32 2.71 16 40 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 41 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.11 2.51 7.01 -52.49 -0.37 2.15 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 46 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -30.35 387.39 -7.27 -37.62 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.86 Total: 13.35 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.60 Total: 0.48 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.39 Total: -35.08 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.01 Total: -36.01 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.35 -7.27 -37.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468695773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.102 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds