Wall clock time and date at job start Tue Mar 31 2020 19:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00704 * 2 1 4 4 C 1.52999 * 109.47659 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47466 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47128 * 54.99786 * 5 4 3 7 7 N 1.46506 * 109.46836 * 295.00181 * 5 4 3 8 8 C 1.34776 * 119.99899 * 155.00401 * 7 5 4 9 9 O 1.21290 * 119.99966 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00271 * 180.02562 * 8 7 5 11 11 H 1.09008 * 109.46418 * 299.99351 * 10 8 7 12 12 C 1.50695 * 109.47352 * 59.99009 * 10 8 7 13 13 H 1.08000 * 120.00485 * 235.35677 * 12 10 8 14 14 C 1.37882 * 119.99738 * 55.34922 * 12 10 8 15 15 N 1.31510 * 120.00219 * 1.98268 * 14 12 10 16 16 Si 1.86804 * 119.99794 * 181.97419 * 14 12 10 17 17 H 1.48502 * 109.47000 * 60.00453 * 16 14 12 18 18 H 1.48495 * 109.46822 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47324 * 300.00300 * 16 14 12 20 20 C 1.50694 * 109.47286 * 179.97438 * 10 8 7 21 21 C 1.38240 * 119.99722 * 226.93832 * 20 10 8 22 22 C 1.38231 * 119.99728 * 179.78731 * 21 20 10 23 23 C 1.38233 * 120.00111 * 0.44147 * 22 21 20 24 24 C 1.38231 * 120.00163 * 359.80964 * 23 22 21 25 25 C 1.38233 * 120.00360 * 47.21222 * 20 10 8 26 26 C 1.50694 * 109.47469 * 175.00070 * 5 4 3 27 27 O 1.20825 * 120.00269 * 119.99838 * 26 5 4 28 28 O 1.34239 * 119.99859 * 300.00003 * 26 5 4 29 29 C 1.45201 * 116.99737 * 179.97438 * 28 26 5 30 30 H 1.09005 * 109.46929 * 300.00169 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99492 * 1 2 3 32 32 H 1.08998 * 109.47678 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47073 * 59.99513 * 3 2 1 34 34 H 1.09007 * 109.47025 * 300.00372 * 3 2 1 35 35 H 1.08998 * 109.46818 * 59.99647 * 4 3 2 36 36 H 1.09003 * 109.46683 * 300.00264 * 4 3 2 37 37 H 0.96994 * 119.99866 * 334.99613 * 7 5 4 38 38 H 0.97000 * 120.00169 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.99817 * 359.97438 * 21 20 10 40 40 H 1.08007 * 119.99641 * 180.27263 * 22 21 20 41 41 H 1.08004 * 119.99862 * 179.83404 * 23 22 21 42 42 H 1.08001 * 120.00473 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.00079 * 359.97389 * 25 20 10 44 44 H 1.09004 * 109.46596 * 179.97438 * 29 28 26 45 45 H 1.08996 * 109.47225 * 300.00136 * 29 28 26 46 46 H 1.09003 * 109.46889 * 60.00611 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1580 2.5821 0.0000 6 1 3.7676 3.1533 0.8423 7 7 3.8228 3.2665 -1.2513 8 6 3.8024 4.6132 -1.2983 9 8 4.0611 5.2587 -0.3045 10 6 3.4572 5.3173 -2.5852 11 1 4.1754 5.0378 -3.3561 12 6 2.0713 4.9167 -3.0208 13 1 1.9137 4.4996 -4.0045 14 6 1.0043 5.0825 -2.1634 15 7 1.1897 5.6261 -0.9803 16 14 -0.7047 4.5351 -2.6823 17 1 -0.6934 3.0769 -2.9631 18 1 -1.6692 4.8218 -1.5902 19 1 -1.1101 5.2717 -3.9062 20 6 3.5046 6.8081 -2.3706 21 6 2.4730 7.6056 -2.8299 22 6 2.5144 8.9727 -2.6292 23 6 3.5916 9.5433 -1.9773 24 6 4.6256 8.7464 -1.5227 25 6 4.5822 7.3788 -1.7196 26 6 5.6553 2.4652 0.1232 27 8 6.3693 2.9080 -0.7451 28 8 6.1958 1.8690 1.1976 29 6 7.6449 1.7916 1.2492 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.8567 0.6437 -0.8908 36 1 3.8574 0.6434 0.8891 37 1 3.6157 2.7503 -2.0459 38 1 0.4390 5.7431 -0.3773 39 1 1.6334 7.1602 -3.3428 40 1 1.7064 9.5952 -2.9841 41 1 3.6252 10.6117 -1.8229 42 1 5.4670 9.1921 -1.0130 43 1 5.3900 6.7562 -1.3644 44 1 7.9493 1.2883 2.1669 45 1 8.0096 1.2309 0.3886 46 1 8.0633 2.7980 1.2312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468695773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:10 Heat of formation + Delta-G solvation = -158.635605 kcal Electronic energy + Delta-G solvation = -30396.425799 eV Core-core repulsion = 26250.800358 eV Total energy + Delta-G solvation = -4145.625441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81326 -40.61925 -39.32568 -38.80640 -37.54181 -36.26833 -35.48740 -32.81097 -32.41376 -31.35858 -29.68804 -28.95398 -27.81039 -26.50724 -25.66287 -23.29311 -23.01209 -22.67218 -21.59198 -21.07527 -18.95043 -18.64094 -18.11455 -17.68023 -17.40663 -17.18190 -16.95975 -16.90435 -16.62306 -16.20688 -15.88154 -15.68619 -15.34713 -14.97259 -14.60768 -14.41791 -14.24845 -14.21248 -13.94402 -13.75158 -13.64624 -13.07891 -13.04948 -12.94724 -12.75268 -12.73027 -12.57082 -12.30870 -12.27040 -12.10948 -11.81480 -11.78405 -11.67655 -11.42285 -11.19203 -10.67166 -10.62624 -10.24172 -9.93351 -9.39077 -9.11155 -8.04599 -6.24969 0.86749 0.92333 1.07847 1.43079 1.47580 1.51948 1.52733 2.30523 2.43565 2.61474 2.78312 3.21199 3.33582 3.74849 3.79145 3.90387 4.16433 4.30340 4.31038 4.32140 4.33557 4.34816 4.48212 4.49317 4.53776 4.56581 4.63839 4.68133 4.75458 4.80839 4.90960 4.95360 4.99825 5.06257 5.15153 5.26857 5.44447 5.53848 5.65767 5.73663 5.88719 5.94164 5.98165 6.13228 6.42441 6.52749 6.67289 6.73128 6.95081 7.43429 7.81526 8.94233 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.005655 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.852515 B = 4950.092675 C = 7606.158652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.067 3.933 4 C -0.101 4.101 5 C 0.167 3.833 6 H 0.106 0.894 7 N -0.708 5.708 8 C 0.561 3.439 9 O -0.577 6.577 10 C 0.048 3.952 11 H 0.061 0.939 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.048 3.952 15 N -0.870 5.870 16 Si 0.933 3.067 17 H -0.264 1.264 18 H -0.295 1.295 19 H -0.273 1.273 20 C -0.034 4.034 21 C -0.084 4.084 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.119 4.119 26 C 0.455 3.545 27 O -0.526 6.526 28 O -0.359 6.359 29 C 0.028 3.972 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.410 0.590 38 H 0.258 0.742 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.138 0.862 45 H 0.066 0.934 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.396 -8.483 2.619 9.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.009 4.009 4 C -0.139 4.139 5 C 0.059 3.941 6 H 0.124 0.876 7 N -0.361 5.361 8 C 0.352 3.648 9 O -0.456 6.456 10 C 0.027 3.973 11 H 0.079 0.921 12 C -0.573 4.573 13 H 0.089 0.911 14 C -0.157 4.157 15 N -0.503 5.503 16 Si 0.759 3.241 17 H -0.189 1.189 18 H -0.221 1.221 19 H -0.198 1.198 20 C -0.035 4.035 21 C -0.102 4.102 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.165 4.165 25 C -0.138 4.138 26 C 0.297 3.703 27 O -0.415 6.415 28 O -0.274 6.274 29 C -0.065 4.065 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.847 -7.999 3.265 9.458 hybrid contribution -1.075 0.015 -0.376 1.139 sum 2.772 -7.985 2.889 8.933 Atomic orbital electron populations 1.22916 0.79818 1.04041 1.00255 1.87752 1.21056 1.27684 1.95581 1.22368 0.93286 0.84457 1.00834 1.21550 0.93587 0.92394 1.06335 1.20192 0.86399 0.96342 0.91201 0.87607 1.45557 1.71707 1.06698 1.12132 1.21022 0.71403 0.81320 0.91094 1.90512 1.50384 1.66267 1.38403 1.17967 0.98219 0.89673 0.91453 0.92092 1.20810 0.90124 1.44787 1.01627 0.91090 1.25483 1.01322 0.94200 0.94731 1.70222 1.31694 1.40579 1.07847 0.85990 0.80800 0.79556 0.77725 1.18872 1.22066 1.19784 1.19902 0.92801 0.95827 0.94973 1.21120 0.97449 0.92947 0.98690 1.21326 0.99078 0.95030 1.01376 1.21169 0.94404 1.00062 1.00122 1.21164 0.99928 0.93450 1.01930 1.20993 0.98531 0.95085 0.99170 1.24598 0.93031 0.73495 0.79197 1.90630 1.63598 1.45340 1.41899 1.86497 1.26535 1.71354 1.43047 1.23565 0.75038 1.02681 1.05251 0.93608 0.94660 0.87196 0.93398 0.93546 0.88906 0.86804 0.75361 0.93302 0.86767 0.85378 0.84350 0.85537 0.89103 0.84404 0.91520 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.40 -11.10 10.70 -148.98 -1.59 -12.70 16 3 C 0.07 1.98 5.83 71.98 0.42 2.40 16 4 C -0.10 -2.67 5.09 30.59 0.16 -2.52 16 5 C 0.17 5.69 2.48 44.24 0.11 5.80 16 6 H 0.11 4.02 7.58 -2.39 -0.02 4.01 16 7 N -0.71 -27.88 3.96 -446.09 -1.77 -29.65 16 8 C 0.56 26.79 5.28 87.66 0.46 27.25 16 9 O -0.58 -31.16 13.62 -3.06 -0.04 -31.21 16 10 C 0.05 2.31 2.78 -13.04 -0.04 2.27 16 11 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 12 C -0.54 -25.50 7.11 25.60 0.18 -25.31 16 13 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 14 C 0.05 2.30 4.00 84.66 0.34 2.64 16 15 N -0.87 -45.87 10.89 21.45 0.23 -45.64 16 16 Si 0.93 38.72 29.54 68.60 2.03 40.74 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 C -0.03 -1.66 4.51 -19.87 -0.09 -1.75 16 21 C -0.08 -3.93 8.20 22.27 0.18 -3.74 16 22 C -0.15 -6.07 10.05 22.27 0.22 -5.85 16 23 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 24 C -0.15 -5.98 10.05 22.27 0.22 -5.75 16 25 C -0.12 -5.64 8.21 22.27 0.18 -5.46 16 26 C 0.46 15.67 7.29 71.23 0.52 16.19 16 27 O -0.53 -21.25 16.07 21.97 0.35 -20.90 16 28 O -0.36 -10.09 10.37 -51.51 -0.53 -10.62 16 29 C 0.03 0.58 10.56 113.37 1.20 1.78 16 30 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.56 7.75 -2.38 -0.02 1.54 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 2.57 7.99 -2.39 -0.02 2.55 16 37 H 0.41 14.79 8.49 -92.71 -0.79 14.00 16 38 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 39 H 0.11 5.53 6.04 -2.91 -0.02 5.51 16 40 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.09 4.48 7.01 -2.91 -0.02 4.46 16 44 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 46 H 0.05 1.19 8.13 -2.39 -0.02 1.17 16 Total: -1.00 -66.44 387.39 4.42 -62.02 By element: Atomic # 1 Polarization: 42.99 SS G_CDS: 0.20 Total: 43.19 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.54 Total: 4.75 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.53 Total: -75.29 kcal Atomic # 8 Polarization: -73.60 SS G_CDS: -1.82 Total: -75.42 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.74 kcal Total: -66.44 4.42 -62.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468695773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.615 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds