Wall clock time and date at job start Tue Mar 31 2020 19:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42908 * 113.99935 * 2 1 4 4 C 1.53001 * 109.47080 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47112 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47043 * 305.00603 * 5 4 3 7 7 N 1.46501 * 109.47009 * 64.99855 * 5 4 3 8 8 C 1.34775 * 120.00261 * 205.00125 * 7 5 4 9 9 O 1.21285 * 119.99722 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00168 * 180.02562 * 8 7 5 11 11 H 1.08995 * 109.47178 * 59.99271 * 10 8 7 12 12 C 1.50706 * 109.46777 * 299.99408 * 10 8 7 13 13 H 1.07997 * 119.99976 * 325.10831 * 12 10 8 14 14 C 1.37875 * 119.99834 * 145.09434 * 12 10 8 15 15 N 1.31513 * 120.00104 * 184.98336 * 14 12 10 16 16 Si 1.86798 * 120.00024 * 4.99161 * 14 12 10 17 17 H 1.48504 * 109.47183 * 84.66394 * 16 14 12 18 18 H 1.48507 * 109.47178 * 204.66278 * 16 14 12 19 19 H 1.48497 * 109.47367 * 324.66509 * 16 14 12 20 20 C 1.50698 * 109.47299 * 179.97438 * 10 8 7 21 21 C 1.38240 * 119.99725 * 65.01627 * 20 10 8 22 22 C 1.38238 * 119.99362 * 179.78836 * 21 20 10 23 23 C 1.38237 * 120.00317 * 0.44322 * 22 21 20 24 24 C 1.38229 * 119.99773 * 359.81012 * 23 22 21 25 25 C 1.38230 * 120.00084 * 245.28996 * 20 10 8 26 26 C 1.50692 * 109.47352 * 185.00325 * 5 4 3 27 27 O 1.20826 * 120.00020 * 240.00360 * 26 5 4 28 28 O 1.34232 * 120.00284 * 59.99800 * 26 5 4 29 29 C 1.45200 * 117.00128 * 180.02562 * 28 26 5 30 30 H 1.09000 * 109.47464 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47814 * 300.00137 * 1 2 3 32 32 H 1.09003 * 109.47389 * 60.00383 * 1 2 3 33 33 H 1.09000 * 109.46720 * 299.99816 * 3 2 1 34 34 H 1.09000 * 109.46680 * 59.99859 * 3 2 1 35 35 H 1.08991 * 109.47142 * 300.00475 * 4 3 2 36 36 H 1.09006 * 109.47051 * 60.00104 * 4 3 2 37 37 H 0.97006 * 119.99731 * 25.00559 * 7 5 4 38 38 H 0.97003 * 120.00100 * 180.02562 * 15 14 12 39 39 H 1.07997 * 120.00270 * 0.02562 * 21 20 10 40 40 H 1.08004 * 119.99632 * 180.27431 * 22 21 20 41 41 H 1.07995 * 119.99613 * 179.83397 * 23 22 21 42 42 H 1.08000 * 120.00199 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00205 * 359.97438 * 25 20 10 44 44 H 1.09001 * 109.46986 * 180.02562 * 29 28 26 45 45 H 1.08999 * 109.46978 * 300.00070 * 29 28 26 46 46 H 1.08997 * 109.46813 * 60.00069 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7672 3.1536 -0.8423 7 7 3.8225 3.2668 1.2513 8 6 3.8019 4.6135 1.2982 9 8 4.0604 5.2590 0.3044 10 6 3.4577 5.3174 2.5855 11 1 4.1764 5.0380 3.3558 12 6 2.0721 4.9167 3.0221 13 1 1.3064 4.7291 2.2839 14 6 1.7820 4.7894 4.3640 15 7 0.6033 4.3455 4.7427 16 14 3.0629 5.2475 5.6441 17 1 2.9995 6.7077 5.9074 18 1 2.7932 4.5056 6.9019 19 1 4.4144 4.8937 5.1407 20 6 3.5058 6.8083 2.3712 21 6 2.6070 7.4125 1.5121 22 6 2.6483 8.7807 1.3190 23 6 3.5944 9.5435 1.9778 24 6 4.4965 8.9386 2.8328 25 6 4.4524 7.5710 3.0294 26 6 5.6550 2.4657 -0.1233 27 8 6.3690 2.9085 0.7450 28 8 6.1956 1.8696 -1.1976 29 6 7.6446 1.7922 -1.2493 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8566 0.6440 0.8907 36 1 3.8574 0.6436 -0.8892 37 1 3.6155 2.7505 2.0460 38 1 0.3991 4.2563 5.6868 39 1 1.8700 6.8161 0.9949 40 1 1.9432 9.2533 0.6512 41 1 3.6284 10.6120 1.8248 42 1 5.2360 9.5344 3.3473 43 1 5.1572 7.0985 3.6974 44 1 7.9491 1.2890 -2.1670 45 1 8.0630 2.7986 -1.2312 46 1 8.0094 1.2315 -0.3887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468695776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:23 Heat of formation + Delta-G solvation = -144.772970 kcal Electronic energy + Delta-G solvation = -29809.457661 eV Core-core repulsion = 25664.433348 eV Total energy + Delta-G solvation = -4145.024312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62917 -39.30323 -38.15575 -37.69421 -36.37878 -35.08530 -33.69697 -31.65627 -31.29425 -30.13155 -28.63096 -27.80316 -26.79971 -25.41903 -23.63493 -22.20156 -21.88778 -21.52365 -20.39242 -19.49621 -17.74248 -17.14307 -16.96871 -16.67752 -16.30323 -16.11834 -15.93725 -15.74401 -15.09174 -14.86791 -14.58795 -14.40712 -13.82285 -13.77479 -13.44289 -13.25628 -13.02262 -12.97928 -12.68674 -12.54313 -12.16963 -12.07990 -11.96051 -11.81476 -11.75991 -11.26067 -11.20357 -11.07416 -11.00401 -10.77201 -10.48850 -10.43469 -10.25302 -9.92591 -9.58993 -9.56475 -9.07934 -8.80319 -8.70828 -8.13413 -7.82181 -6.34522 -4.39112 2.15155 2.21235 2.28598 2.58306 3.16347 3.22928 3.27807 3.51234 3.68511 3.83738 4.20504 4.62534 4.80082 4.85995 4.95217 4.98853 5.06305 5.13666 5.22968 5.33809 5.44857 5.47453 5.55094 5.56071 5.59658 5.60094 5.71739 5.74299 5.89334 5.94974 6.00119 6.07228 6.28331 6.32580 6.38208 6.46489 6.73559 6.80379 6.86047 7.17369 7.19191 7.24109 7.24621 7.58000 7.79144 7.83783 8.05612 8.18737 8.63371 8.95943 9.24089 10.75937 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.004705 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.363608 B = 5949.859479 C = 7432.558779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.126 0.874 7 N -0.709 5.709 8 C 0.546 3.454 9 O -0.556 6.556 10 C 0.020 3.980 11 H 0.076 0.924 12 C -0.512 4.512 13 H 0.083 0.917 14 C 0.088 3.912 15 N -0.881 5.881 16 Si 0.863 3.137 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.260 1.260 20 C -0.028 4.028 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.135 4.135 26 C 0.449 3.551 27 O -0.491 6.491 28 O -0.361 6.361 29 C 0.036 3.964 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.414 0.586 38 H 0.269 0.731 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.570 -5.368 -8.968 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.155 4.155 5 C 0.054 3.946 6 H 0.143 0.857 7 N -0.362 5.362 8 C 0.336 3.664 9 O -0.433 6.433 10 C -0.001 4.001 11 H 0.094 0.906 12 C -0.550 4.550 13 H 0.101 0.899 14 C -0.117 4.117 15 N -0.516 5.516 16 Si 0.690 3.310 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.186 1.186 20 C -0.029 4.029 21 C -0.091 4.091 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.154 4.154 26 C 0.289 3.711 27 O -0.377 6.377 28 O -0.277 6.277 29 C -0.058 4.058 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.251 0.749 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.975 -4.982 -9.235 12.075 hybrid contribution 0.541 0.349 1.297 1.447 sum 6.516 -4.634 -7.939 11.267 Atomic orbital electron populations 1.22732 0.80717 1.02424 1.00548 1.87782 1.19990 1.27988 1.95607 1.22520 0.92379 0.84766 1.02014 1.21655 0.94812 0.93909 1.05173 1.20234 0.86561 0.95580 0.92209 0.85691 1.45777 1.71181 1.07356 1.11927 1.21235 0.72881 0.81070 0.91244 1.90602 1.49389 1.65753 1.37603 1.18566 1.00537 0.88707 0.92305 0.90616 1.20499 0.93155 1.47961 0.93343 0.89867 1.24944 0.95309 0.93336 0.98136 1.69848 1.21207 1.43638 1.16942 0.87057 0.82524 0.80071 0.81362 1.19126 1.21069 1.18560 1.20051 0.92768 0.96360 0.93720 1.20826 0.97749 0.93693 0.96849 1.21027 0.98963 0.94356 1.00410 1.20861 0.97224 0.98819 0.99199 1.20885 0.99496 0.94670 0.99585 1.20988 0.98980 0.94089 1.01307 1.24519 0.92976 0.74271 0.79304 1.90673 1.62854 1.43670 1.40467 1.86502 1.24604 1.72245 1.44345 1.23223 0.76987 1.02619 1.03009 0.89894 0.93341 0.94192 0.92923 0.91161 0.89819 0.88582 0.74942 0.92073 0.86515 0.87121 0.87323 0.87259 0.87399 0.88251 0.92019 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.34 10.70 -35.23 -0.38 -5.72 16 3 C 0.06 0.79 5.83 37.16 0.22 1.00 16 4 C -0.12 -1.44 5.09 -26.73 -0.14 -1.58 16 5 C 0.16 2.44 2.48 -69.09 -0.17 2.26 16 6 H 0.13 1.88 7.58 -51.93 -0.39 1.49 16 7 N -0.71 -12.67 3.96 -54.94 -0.22 -12.89 16 8 C 0.55 11.67 6.87 -10.99 -0.08 11.60 16 9 O -0.56 -12.88 15.03 5.55 0.08 -12.80 16 10 C 0.02 0.46 1.89 -94.07 -0.18 0.28 16 11 H 0.08 1.74 4.89 -51.93 -0.25 1.48 16 12 C -0.51 -12.68 8.07 -34.44 -0.28 -12.96 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 14 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 15 N -0.88 -24.12 13.96 55.43 0.77 -23.35 16 16 Si 0.86 19.90 27.18 -169.99 -4.62 15.28 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.26 -5.72 6.06 56.52 0.34 -5.37 16 20 C -0.03 -0.63 4.09 -104.62 -0.43 -1.06 16 21 C -0.07 -1.57 8.25 -39.58 -0.33 -1.90 16 22 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 23 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.14 -2.82 9.46 -39.58 -0.37 -3.20 16 26 C 0.45 7.19 7.29 36.00 0.26 7.45 16 27 O -0.49 -9.43 16.07 -18.75 -0.30 -9.73 16 28 O -0.36 -4.83 10.37 -39.26 -0.41 -5.23 16 29 C 0.04 0.37 10.56 101.05 1.07 1.44 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.03 7.99 -51.93 -0.42 0.62 16 37 H 0.41 7.12 8.49 -40.82 -0.35 6.77 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.12 2.55 7.93 -52.49 -0.42 2.14 16 40 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.13 7.95 -52.49 -0.42 1.71 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 46 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -31.67 392.27 -6.67 -38.33 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -6.91 Total: 11.70 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.60 Total: -1.51 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.56 Total: -36.24 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.00 Total: -33.48 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.62 Total: 15.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.67 -6.67 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468695776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.439 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds