Wall clock time and date at job start Tue Mar 31 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00104 * 2 1 4 4 H 1.07989 * 120.00534 * 203.23463 * 3 2 1 5 5 C 1.38821 * 119.99670 * 23.22810 * 3 2 1 6 6 N 1.31615 * 119.99915 * 13.92658 * 5 3 2 7 7 Si 1.86799 * 119.99897 * 193.92022 * 5 3 2 8 8 H 1.48499 * 109.46931 * 90.00289 * 7 5 3 9 9 H 1.48504 * 109.47046 * 210.00227 * 7 5 3 10 10 H 1.48504 * 109.47189 * 330.00286 * 7 5 3 11 11 C 1.46492 * 120.00498 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47441 * 89.99358 * 11 2 1 13 13 H 1.09005 * 110.91707 * 51.10634 * 12 11 2 14 14 C 1.55160 * 111.00543 * 175.00365 * 12 11 2 15 15 C 1.54325 * 103.10352 * 153.49063 * 14 12 11 16 16 N 1.47321 * 107.11869 * 338.02324 * 15 14 12 17 17 C 1.34773 * 125.61372 * 178.81699 * 16 15 14 18 18 O 1.21638 * 119.99925 * 179.86381 * 17 16 15 19 19 C 1.47266 * 120.00172 * 359.86347 * 17 16 15 20 20 N 1.33553 * 123.13948 * 359.70428 * 19 17 16 21 21 C 1.28650 * 115.76350 * 179.83378 * 20 19 17 22 22 S 1.70766 * 110.56188 * 0.41767 * 21 20 19 23 23 C 1.35210 * 123.13851 * 180.02562 * 19 17 16 24 24 C 1.50699 * 125.58756 * 359.95908 * 23 19 17 25 25 C 1.53000 * 117.49661 * 188.74756 * 24 23 19 26 26 C 1.52998 * 117.49877 * 120.09221 * 24 23 19 27 27 C 1.47426 * 108.73534 * 358.70012 * 16 15 14 28 28 H 1.09001 * 109.46817 * 275.16844 * 1 2 3 29 29 H 1.09003 * 109.46909 * 35.16399 * 1 2 3 30 30 H 1.08992 * 109.46913 * 155.16544 * 1 2 3 31 31 H 0.97003 * 119.99917 * 180.02562 * 6 5 3 32 32 H 1.09011 * 109.46678 * 329.99537 * 11 2 1 33 33 H 1.09004 * 109.47507 * 210.00301 * 11 2 1 34 34 H 1.09000 * 110.71909 * 271.94082 * 14 12 11 35 35 H 1.09004 * 110.72134 * 35.03866 * 14 12 11 36 36 H 1.08996 * 109.88164 * 97.31164 * 15 14 12 37 37 H 1.09004 * 109.88241 * 218.48012 * 15 14 12 38 38 H 1.08004 * 124.71970 * 180.22767 * 21 20 19 39 39 H 1.08997 * 115.55416 * 334.41664 * 24 23 19 40 40 H 1.09002 * 117.50214 * 0.02562 * 25 24 23 41 41 H 1.09005 * 117.50122 * 145.01960 * 25 24 23 42 42 H 1.08994 * 117.50233 * 214.97873 * 26 24 23 43 43 H 1.09010 * 117.50011 * 359.97438 * 26 24 23 44 44 H 1.09001 * 110.36361 * 265.44348 * 27 16 15 45 45 H 1.09006 * 110.45864 * 143.16747 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1640 1.2239 -0.3689 5 6 1.5400 2.3394 0.4742 6 7 0.4254 2.2565 1.1692 7 14 2.3016 4.0092 0.1259 8 1 1.7593 4.5444 -1.1487 9 1 1.9751 4.9429 1.2336 10 1 3.7758 3.8677 0.0161 11 6 2.1976 -1.2686 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 2.9022 -0.9036 -2.0229 14 6 3.3348 -2.9853 -1.4871 15 6 2.9289 -3.6457 -2.8215 16 7 1.5947 -3.1293 -3.1727 17 6 0.8976 -3.4459 -4.2819 18 8 -0.2013 -2.9592 -4.4692 19 6 1.4663 -4.3811 -5.2672 20 7 2.6680 -4.9470 -5.1277 21 6 3.0234 -5.7446 -6.0724 22 16 1.8099 -5.8338 -7.2705 23 6 0.8233 -4.7421 -6.4005 24 6 -0.5398 -4.2611 -6.8266 25 6 -1.1820 -4.9407 -8.0377 26 6 -0.6410 -3.5138 -8.1578 27 6 1.1471 -2.2115 -2.1094 28 1 -0.3633 0.0926 1.0235 29 1 -0.3633 0.8402 -0.5919 30 1 -0.3633 -0.9326 -0.4316 31 1 -0.0009 3.0625 1.5002 32 1 1.6085 -2.0285 0.5131 33 1 3.1500 -1.1385 0.5134 34 1 4.3926 -2.7225 -1.4929 35 1 3.1065 -3.6413 -0.6470 36 1 3.6450 -3.3804 -3.5992 37 1 2.8914 -4.7286 -2.7029 38 1 3.9605 -6.2808 -6.1048 39 1 -1.1996 -3.9429 -6.0195 40 1 -0.6187 -5.7359 -8.5260 41 1 -2.2643 -5.0693 -8.0275 42 1 -1.3675 -2.7043 -8.2267 43 1 0.2785 -3.3697 -8.7253 44 1 0.5311 -2.7430 -1.3840 45 1 0.5933 -1.3752 -2.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481497101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:49 Heat of formation + Delta-G solvation = 68.654380 kcal Electronic energy + Delta-G solvation = -26651.738509 eV Core-core repulsion = 22991.014723 eV Total energy + Delta-G solvation = -3660.723786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76871 -38.99020 -37.65067 -37.20298 -35.26327 -32.25085 -30.78445 -30.50480 -28.71399 -26.96370 -25.90393 -25.04197 -23.49094 -22.73716 -22.28256 -21.58723 -21.04012 -19.72590 -18.97358 -18.27662 -16.66847 -16.55481 -16.24550 -15.98868 -15.24610 -15.11806 -14.79614 -14.45714 -14.40230 -13.98191 -13.51571 -13.46082 -12.91456 -12.83608 -12.43903 -12.38123 -12.20401 -12.17263 -11.90243 -11.68367 -11.43756 -11.32087 -10.93435 -10.88688 -10.84373 -10.69425 -10.46375 -10.23050 -10.03859 -9.96712 -9.84581 -9.77465 -9.68576 -9.59670 -9.11278 -8.48989 -8.36195 -6.68058 -5.66548 -3.13724 0.24128 0.90305 1.32574 1.85748 3.16833 3.31236 3.42094 3.48378 3.49251 3.62597 3.88790 4.19590 4.49749 4.53622 4.67202 4.68777 4.89407 4.98907 5.10088 5.23737 5.27267 5.29795 5.48771 5.50024 5.57255 5.62150 5.75946 5.76505 5.89579 5.98223 6.04620 6.08762 6.22997 6.25023 6.36599 6.45189 6.61832 6.74781 6.84861 6.95452 7.16956 7.43982 7.69043 7.79183 7.86324 8.25807 8.45824 9.29347 9.93254 10.42347 11.37819 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.002702 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.884004 B =10361.666236 C =11083.655073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.163 3.837 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.133 4.133 15 C 0.119 3.881 16 N -0.600 5.600 17 C 0.602 3.398 18 O -0.534 6.534 19 C 0.007 3.993 20 N -0.429 5.429 21 C -0.010 4.010 22 S 0.192 5.808 23 C -0.148 4.148 24 C -0.087 4.087 25 C -0.178 4.178 26 C -0.159 4.159 27 C 0.120 3.880 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.000 1.000 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.204 0.796 39 H 0.150 0.850 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -20.439 -18.197 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.035 3.965 12 C -0.140 4.140 13 H 0.101 0.899 14 C -0.171 4.171 15 C -0.004 4.004 16 N -0.332 5.332 17 C 0.388 3.612 18 O -0.412 6.412 19 C -0.127 4.127 20 N -0.143 5.143 21 C -0.309 4.309 22 S 0.448 5.552 23 C -0.272 4.272 24 C -0.108 4.108 25 C -0.215 4.215 26 C -0.197 4.197 27 C -0.002 4.002 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.221 0.779 39 H 0.167 0.833 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.090 -20.504 -18.681 27.909 hybrid contribution 0.275 1.481 0.481 1.581 sum 3.365 -19.023 -18.200 26.541 Atomic orbital electron populations 1.20823 0.82686 0.95516 0.99390 1.43894 1.01806 1.00643 1.86028 1.19169 0.98396 0.85683 1.35172 0.91495 1.25015 0.98032 0.98469 0.98119 1.70073 1.20229 1.27130 1.37677 0.86286 0.78692 0.84343 0.77403 1.21565 1.21816 1.20515 1.20658 0.96390 0.88505 0.90937 1.23236 0.93521 0.95885 1.01336 0.89862 1.22756 1.00474 0.97613 0.96295 1.22080 0.83438 0.98159 0.96754 1.48490 1.19140 1.45183 1.20383 1.16615 0.84154 0.80553 0.79879 1.90758 1.19846 1.54164 1.76477 1.20324 0.91606 1.03712 0.97094 1.67166 1.13160 1.07801 1.26165 1.28382 1.05118 1.02909 0.94530 1.82742 1.08836 1.38946 1.24628 1.24801 1.01614 1.02390 0.98403 1.20727 0.91832 1.04402 0.93815 1.23169 1.01528 0.96019 1.00818 1.23086 1.03408 0.95393 0.97797 1.22408 0.97633 0.92157 0.87963 0.95141 0.94313 0.98108 0.93814 0.94363 0.92860 0.90383 0.90902 0.91165 0.91395 0.77902 0.83288 0.88748 0.87570 0.87542 0.88655 0.91678 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 8.75 59.85 0.52 4.56 16 2 N -0.60 -15.14 2.89 -181.12 -0.52 -15.66 16 3 C -0.25 -7.04 9.65 -15.05 -0.15 -7.19 16 4 H 0.07 1.81 7.87 -52.49 -0.41 1.39 16 5 C 0.00 0.06 5.08 -17.43 -0.09 -0.03 16 6 N -0.91 -26.92 10.78 55.49 0.60 -26.32 16 7 Si 0.90 22.25 29.58 -169.99 -5.03 17.22 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.16 3.28 5.15 -4.05 -0.02 3.26 16 12 C -0.12 -2.05 3.26 -88.47 -0.29 -2.34 16 13 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 14 C -0.13 -1.79 6.41 -24.89 -0.16 -1.95 16 15 C 0.12 1.63 5.47 -2.90 -0.02 1.61 16 16 N -0.60 -9.93 3.33 -171.60 -0.57 -10.50 16 17 C 0.60 10.32 7.83 -12.59 -0.10 10.22 16 18 O -0.53 -10.34 14.41 5.24 0.08 -10.27 16 19 C 0.01 0.10 6.62 -84.53 -0.56 -0.46 16 20 N -0.43 -5.17 7.66 -12.36 -0.09 -5.26 16 21 C -0.01 -0.08 12.17 51.43 0.63 0.54 16 22 S 0.19 1.47 21.77 -107.50 -2.34 -0.87 16 23 C -0.15 -1.74 6.04 -35.39 -0.21 -1.95 16 24 C -0.09 -0.99 5.40 -91.77 -0.50 -1.49 16 25 C -0.18 -1.42 10.03 -26.70 -0.27 -1.69 16 26 C -0.16 -1.46 10.24 -26.70 -0.27 -1.73 16 27 C 0.12 2.15 5.04 -2.53 -0.01 2.14 16 28 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 29 H 0.04 1.05 7.38 -51.93 -0.38 0.67 16 30 H 0.00 0.01 6.55 -51.93 -0.34 -0.33 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.04 0.72 7.89 -51.92 -0.41 0.32 16 33 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.07 0.96 7.50 -51.93 -0.39 0.57 16 37 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 38 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.15 2.05 6.17 -51.93 -0.32 1.73 16 40 H 0.09 0.64 7.28 -51.93 -0.38 0.26 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 44 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 45 H 0.08 1.67 8.01 -51.93 -0.42 1.26 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -32.95 373.25 -10.48 -43.43 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.73 Total: -0.87 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.49 Total: 3.49 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.59 Total: -57.75 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.34 Total: -0.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.95 -10.48 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481497101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.084 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds