Wall clock time and date at job start Tue Mar 31 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00104 * 2 1 4 4 H 1.07989 * 120.00534 * 203.23463 * 3 2 1 5 5 C 1.38821 * 119.99670 * 23.22810 * 3 2 1 6 6 N 1.31615 * 119.99915 * 13.92658 * 5 3 2 7 7 Si 1.86799 * 119.99897 * 193.92022 * 5 3 2 8 8 H 1.48499 * 109.46931 * 90.00289 * 7 5 3 9 9 H 1.48504 * 109.47046 * 210.00227 * 7 5 3 10 10 H 1.48504 * 109.47189 * 330.00286 * 7 5 3 11 11 C 1.46492 * 120.00498 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47441 * 89.99358 * 11 2 1 13 13 H 1.09005 * 110.91707 * 51.10634 * 12 11 2 14 14 C 1.55160 * 111.00543 * 175.00365 * 12 11 2 15 15 C 1.54325 * 103.10352 * 153.49063 * 14 12 11 16 16 N 1.47321 * 107.11869 * 338.02324 * 15 14 12 17 17 C 1.34773 * 125.61372 * 178.81699 * 16 15 14 18 18 O 1.21638 * 119.99925 * 179.86381 * 17 16 15 19 19 C 1.47266 * 120.00172 * 359.86347 * 17 16 15 20 20 N 1.33553 * 123.13948 * 359.70428 * 19 17 16 21 21 C 1.28650 * 115.76350 * 179.83378 * 20 19 17 22 22 S 1.70766 * 110.56188 * 0.41767 * 21 20 19 23 23 C 1.35210 * 123.13851 * 180.02562 * 19 17 16 24 24 C 1.50699 * 125.58756 * 359.95908 * 23 19 17 25 25 C 1.53000 * 117.49661 * 188.74756 * 24 23 19 26 26 C 1.52998 * 117.49877 * 120.09221 * 24 23 19 27 27 C 1.47426 * 108.73534 * 358.70012 * 16 15 14 28 28 H 1.09001 * 109.46817 * 275.16844 * 1 2 3 29 29 H 1.09003 * 109.46909 * 35.16399 * 1 2 3 30 30 H 1.08992 * 109.46913 * 155.16544 * 1 2 3 31 31 H 0.97003 * 119.99917 * 180.02562 * 6 5 3 32 32 H 1.09011 * 109.46678 * 329.99537 * 11 2 1 33 33 H 1.09004 * 109.47507 * 210.00301 * 11 2 1 34 34 H 1.09000 * 110.71909 * 271.94082 * 14 12 11 35 35 H 1.09004 * 110.72134 * 35.03866 * 14 12 11 36 36 H 1.08996 * 109.88164 * 97.31164 * 15 14 12 37 37 H 1.09004 * 109.88241 * 218.48012 * 15 14 12 38 38 H 1.08004 * 124.71970 * 180.22767 * 21 20 19 39 39 H 1.08997 * 115.55416 * 334.41664 * 24 23 19 40 40 H 1.09002 * 117.50214 * 0.02562 * 25 24 23 41 41 H 1.09005 * 117.50122 * 145.01960 * 25 24 23 42 42 H 1.08994 * 117.50233 * 214.97873 * 26 24 23 43 43 H 1.09010 * 117.50011 * 359.97438 * 26 24 23 44 44 H 1.09001 * 110.36361 * 265.44348 * 27 16 15 45 45 H 1.09006 * 110.45864 * 143.16747 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1640 1.2239 -0.3689 5 6 1.5400 2.3394 0.4742 6 7 0.4254 2.2565 1.1692 7 14 2.3016 4.0092 0.1259 8 1 1.7593 4.5444 -1.1487 9 1 1.9751 4.9429 1.2336 10 1 3.7758 3.8677 0.0161 11 6 2.1976 -1.2686 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 2.9022 -0.9036 -2.0229 14 6 3.3348 -2.9853 -1.4871 15 6 2.9289 -3.6457 -2.8215 16 7 1.5947 -3.1293 -3.1727 17 6 0.8976 -3.4459 -4.2819 18 8 -0.2013 -2.9592 -4.4692 19 6 1.4663 -4.3811 -5.2672 20 7 2.6680 -4.9470 -5.1277 21 6 3.0234 -5.7446 -6.0724 22 16 1.8099 -5.8338 -7.2705 23 6 0.8233 -4.7421 -6.4005 24 6 -0.5398 -4.2611 -6.8266 25 6 -1.1820 -4.9407 -8.0377 26 6 -0.6410 -3.5138 -8.1578 27 6 1.1471 -2.2115 -2.1094 28 1 -0.3633 0.0926 1.0235 29 1 -0.3633 0.8402 -0.5919 30 1 -0.3633 -0.9326 -0.4316 31 1 -0.0009 3.0625 1.5002 32 1 1.6085 -2.0285 0.5131 33 1 3.1500 -1.1385 0.5134 34 1 4.3926 -2.7225 -1.4929 35 1 3.1065 -3.6413 -0.6470 36 1 3.6450 -3.3804 -3.5992 37 1 2.8914 -4.7286 -2.7029 38 1 3.9605 -6.2808 -6.1048 39 1 -1.1996 -3.9429 -6.0195 40 1 -0.6187 -5.7359 -8.5260 41 1 -2.2643 -5.0693 -8.0275 42 1 -1.3675 -2.7043 -8.2267 43 1 0.2785 -3.3697 -8.7253 44 1 0.5311 -2.7430 -1.3840 45 1 0.5933 -1.3752 -2.5361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481497101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:48 Heat of formation + Delta-G solvation = 48.915519 kcal Electronic energy + Delta-G solvation = -26652.594450 eV Core-core repulsion = 22991.014723 eV Total energy + Delta-G solvation = -3661.579727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78444 -40.12764 -38.80266 -38.18139 -37.08616 -33.96110 -32.36276 -31.49322 -30.08402 -28.43041 -27.73628 -26.40093 -24.74761 -23.44705 -23.12481 -22.78484 -22.60002 -21.22608 -20.04346 -19.14640 -18.64244 -17.70115 -17.25881 -17.19194 -16.82117 -16.30067 -16.05691 -15.50449 -15.41112 -15.19391 -15.09158 -14.82301 -14.55865 -14.33461 -13.81606 -13.77579 -13.39622 -13.15350 -13.06692 -12.91870 -12.84729 -12.57691 -12.53537 -12.48463 -12.19425 -12.10216 -12.02236 -11.80599 -11.70706 -11.61201 -11.45336 -10.98801 -10.65970 -10.61921 -10.25673 -10.00113 -9.59615 -8.76606 -7.81771 -5.31238 -0.54839 0.19995 0.60482 0.93726 1.44437 1.46949 1.54907 1.97436 2.21285 2.50590 2.85829 3.06880 3.30687 3.38392 3.54222 3.71519 3.77015 3.80476 3.98004 4.02474 4.09945 4.15420 4.33378 4.49368 4.53261 4.63294 4.63660 4.68884 4.78830 4.84166 4.90195 4.90978 4.96078 5.00385 5.05477 5.10978 5.13158 5.20747 5.29510 5.38124 5.49036 5.63335 5.67989 6.33694 6.34907 6.49287 7.01308 7.15279 7.87944 8.32521 9.21182 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.002702 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.884004 B =10361.666236 C =11083.655073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.618 5.618 3 C -0.259 4.259 4 H 0.073 0.927 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.292 1.292 9 H -0.294 1.294 10 H -0.264 1.264 11 C 0.163 3.837 12 C -0.107 4.107 13 H 0.061 0.939 14 C -0.118 4.118 15 C 0.125 3.875 16 N -0.606 5.606 17 C 0.590 3.410 18 O -0.574 6.574 19 C -0.025 4.025 20 N -0.455 5.455 21 C -0.006 4.006 22 S 0.282 5.718 23 C -0.167 4.167 24 C -0.119 4.119 25 C -0.150 4.150 26 C -0.160 4.160 27 C 0.125 3.875 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.247 0.753 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -23.205 -20.392 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.389 4.389 4 H 0.090 0.910 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.219 1.219 9 H -0.221 1.221 10 H -0.189 1.189 11 C 0.036 3.964 12 C -0.129 4.129 13 H 0.079 0.921 14 C -0.157 4.157 15 C 0.004 3.996 16 N -0.338 5.338 17 C 0.378 3.622 18 O -0.455 6.455 19 C -0.158 4.158 20 N -0.170 5.170 21 C -0.305 4.305 22 S 0.539 5.461 23 C -0.292 4.292 24 C -0.140 4.140 25 C -0.187 4.187 26 C -0.198 4.198 27 C 0.003 3.997 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.717 -23.321 -20.895 31.830 hybrid contribution -0.533 2.205 1.039 2.496 sum 5.184 -21.116 -19.856 29.445 Atomic orbital electron populations 1.20502 0.83328 0.95401 0.97396 1.44132 1.01816 1.01976 1.86168 1.19524 0.98624 0.86822 1.33981 0.90955 1.25802 0.98819 1.01919 0.98562 1.70234 1.21732 1.27528 1.39161 0.85274 0.78636 0.80010 0.76606 1.21920 1.22084 1.18863 1.20839 0.96200 0.86642 0.92688 1.22912 0.94025 0.97179 0.98772 0.92079 1.22750 1.00773 0.95266 0.96875 1.22165 0.81898 0.98826 0.96742 1.48596 1.20191 1.44902 1.20067 1.17273 0.83848 0.80741 0.80350 1.90727 1.21571 1.55794 1.77403 1.19960 0.93312 1.05058 0.97505 1.67110 1.12495 1.09323 1.28038 1.29113 1.06483 1.01301 0.93634 1.82376 1.06109 1.35532 1.22050 1.25078 1.02170 1.03165 0.98748 1.20588 0.92098 1.07314 0.93983 1.23287 1.02314 0.95591 0.97535 1.23173 1.03969 0.96370 0.96272 1.22158 0.97666 0.91448 0.88416 0.97551 0.97510 0.95538 0.94392 0.92965 0.92235 0.88177 0.89138 0.90793 0.89966 0.73855 0.86934 0.86668 0.86504 0.87815 0.87663 0.91771 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.40 8.75 127.77 1.12 10.52 16 2 N -0.62 -31.77 2.89 -726.95 -2.10 -33.87 16 3 C -0.26 -14.55 9.65 84.03 0.81 -13.73 16 4 H 0.07 3.90 7.87 -2.92 -0.02 3.88 16 5 C -0.06 -3.25 5.08 84.86 0.43 -2.82 16 6 N -0.94 -57.69 10.78 21.65 0.23 -57.46 16 7 Si 0.97 46.55 29.58 68.60 2.03 48.57 16 8 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 9 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.16 6.46 5.15 86.38 0.45 6.91 16 12 C -0.11 -3.70 3.26 -9.40 -0.03 -3.73 16 13 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 14 C -0.12 -2.92 6.41 31.78 0.20 -2.72 16 15 C 0.13 3.25 5.47 86.67 0.47 3.72 16 16 N -0.61 -20.47 3.33 -815.05 -2.72 -23.18 16 17 C 0.59 21.14 7.83 86.62 0.68 21.82 16 18 O -0.57 -24.06 14.41 -4.15 -0.06 -24.12 16 19 C -0.02 -0.68 6.62 40.56 0.27 -0.41 16 20 N -0.46 -10.05 7.66 -193.03 -1.48 -11.53 16 21 C -0.01 -0.08 12.17 130.71 1.59 1.51 16 22 S 0.28 3.28 21.77 -56.49 -1.23 2.05 16 23 C -0.17 -3.77 6.04 24.99 0.15 -3.62 16 24 C -0.12 -2.74 5.40 -11.54 -0.06 -2.80 16 25 C -0.15 -2.13 10.03 30.62 0.31 -1.82 16 26 C -0.16 -2.83 10.24 30.62 0.31 -2.52 16 27 C 0.13 4.67 5.04 86.85 0.44 5.11 16 28 H 0.01 0.36 7.33 -2.39 -0.02 0.34 16 29 H 0.01 0.36 7.38 -2.39 -0.02 0.34 16 30 H 0.03 1.21 6.55 -2.39 -0.02 1.20 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.05 1.93 7.89 -2.38 -0.02 1.91 16 33 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 1.97 8.04 -2.38 -0.02 1.95 16 36 H 0.07 1.88 7.50 -2.39 -0.02 1.87 16 37 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 38 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.11 3.42 6.17 -2.39 -0.01 3.40 16 40 H 0.12 1.13 7.28 -2.39 -0.02 1.12 16 41 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 45 H 0.04 1.89 8.01 -2.38 -0.02 1.87 16 Total: -1.00 -76.58 373.25 2.81 -73.77 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.99 Total: 10.36 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 7.14 Total: 15.40 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -6.06 Total: -126.04 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.23 Total: 2.05 kcal Total: -76.58 2.81 -73.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481497101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.688 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds