Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36944 * 120.00022 * 2 1 4 4 H 1.07996 * 119.99670 * 321.74596 * 3 2 1 5 5 C 1.38812 * 119.99634 * 141.74060 * 3 2 1 6 6 N 1.31618 * 119.99607 * 157.42288 * 5 3 2 7 7 Si 1.86800 * 120.00302 * 337.42540 * 5 3 2 8 8 H 1.48498 * 109.46977 * 95.66144 * 7 5 3 9 9 H 1.48493 * 109.47115 * 215.66360 * 7 5 3 10 10 H 1.48502 * 109.46781 * 335.66613 * 7 5 3 11 11 C 1.46491 * 119.99843 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47469 * 89.99751 * 11 2 1 13 13 H 1.08999 * 110.88339 * 302.57394 * 12 11 2 14 14 C 1.55157 * 111.03883 * 178.66798 * 12 11 2 15 15 C 1.54316 * 102.86135 * 206.21586 * 14 12 11 16 16 N 1.47021 * 107.27895 * 22.52657 * 15 14 12 17 17 C 1.34771 * 125.65137 * 180.97161 * 16 15 14 18 18 O 1.21630 * 120.00077 * 179.69473 * 17 16 15 19 19 C 1.47270 * 119.99911 * 359.68495 * 17 16 15 20 20 C 1.35197 * 123.14155 * 179.70719 * 19 17 16 21 21 S 1.70945 * 108.82922 * 179.87246 * 20 19 17 22 22 C 1.70776 * 91.12538 * 0.33559 * 21 20 19 23 23 C 1.50702 * 124.71948 * 179.80691 * 22 21 20 24 24 C 1.53001 * 117.49848 * 8.61941 * 23 22 21 25 25 C 1.52998 * 117.49897 * 299.99442 * 23 22 21 26 26 N 1.28643 * 110.55775 * 359.80131 * 22 21 20 27 27 C 1.47424 * 108.70145 * 0.70219 * 16 15 14 28 28 H 1.08998 * 109.47210 * 265.65098 * 1 2 3 29 29 H 1.09007 * 109.47100 * 25.64427 * 1 2 3 30 30 H 1.08993 * 109.47339 * 145.64652 * 1 2 3 31 31 H 0.96999 * 120.00306 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47490 * 329.99506 * 11 2 1 33 33 H 1.09001 * 109.47073 * 210.00013 * 11 2 1 34 34 H 1.09001 * 110.72059 * 324.77295 * 14 12 11 35 35 H 1.08992 * 110.72000 * 87.86683 * 14 12 11 36 36 H 1.08995 * 109.98188 * 263.04508 * 15 14 12 37 37 H 1.09005 * 109.77268 * 141.88631 * 15 14 12 38 38 H 1.08000 * 125.59124 * 359.96972 * 20 19 17 39 39 H 1.08998 * 115.54985 * 154.32628 * 23 22 21 40 40 H 1.08999 * 117.50122 * 359.97438 * 24 23 22 41 41 H 1.08997 * 117.50126 * 145.02215 * 24 23 22 42 42 H 1.09003 * 117.50275 * 214.98002 * 25 23 22 43 43 H 1.09002 * 117.49924 * 359.97438 * 25 23 22 44 44 H 1.08999 * 110.36517 * 94.93906 * 27 16 15 45 45 H 1.08998 * 110.36957 * 217.14790 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7836 2.0208 -0.5791 5 6 3.3142 1.3150 0.7444 6 7 4.1989 2.2367 0.4278 7 14 3.6258 0.1805 2.1954 8 1 4.4690 -0.9612 1.7589 9 1 4.3256 0.9307 3.2689 10 1 2.3303 -0.3298 2.7118 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 1 1.5155 -1.8032 -1.9924 14 6 3.2568 -3.0359 -1.4864 15 6 3.9749 -2.9579 -2.8500 16 7 4.0437 -1.5385 -3.2268 17 6 4.5817 -1.0525 -4.3629 18 8 4.5785 0.1455 -4.5734 19 6 5.1737 -1.9719 -5.3493 20 6 5.7248 -1.5544 -6.5111 21 16 6.2990 -2.9163 -7.3701 22 6 5.7616 -3.9648 -6.1338 23 6 5.9116 -5.4642 -6.1545 24 6 6.7686 -6.0731 -7.2661 25 6 5.2465 -6.2249 -7.3033 26 7 5.2111 -3.2965 -5.1824 27 6 3.4207 -0.7352 -2.1590 28 1 -0.3633 -0.0779 1.0247 29 1 -0.3634 0.9265 -0.4448 30 1 -0.3633 -0.8483 -0.5799 31 1 5.0128 2.3267 0.9477 32 1 1.6084 -2.0286 0.5130 33 1 3.1498 -1.1386 0.5133 34 1 3.9769 -3.0769 -0.6690 35 1 2.5867 -3.8947 -1.4514 36 1 3.4118 -3.5136 -3.5998 37 1 4.9813 -3.3669 -2.7608 38 1 5.7928 -0.5285 -6.8417 39 1 5.9357 -5.9477 -5.1779 40 1 7.2235 -5.3893 -7.9828 41 1 7.3567 -6.9575 -7.0211 42 1 4.8333 -7.2091 -7.0827 43 1 4.7000 -5.6409 -8.0439 44 1 4.1791 -0.3752 -1.4638 45 1 2.8706 0.1030 -2.5866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494180821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = 72.660461 kcal Electronic energy + Delta-G solvation = -26885.914692 eV Core-core repulsion = 23225.364623 eV Total energy + Delta-G solvation = -3660.550069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57020 -39.02318 -37.67860 -37.08571 -35.42742 -31.93851 -31.23586 -30.60063 -28.78046 -26.89166 -26.06315 -25.42100 -23.76069 -22.92413 -22.26976 -21.03877 -20.69774 -19.81986 -19.20154 -18.12248 -16.84551 -16.56880 -16.25230 -15.67994 -15.34298 -15.18799 -14.95382 -14.52934 -13.96799 -13.80072 -13.74355 -13.29245 -13.06178 -12.68326 -12.65998 -12.53808 -12.27671 -12.14354 -11.95226 -11.86082 -11.62176 -11.42747 -11.26020 -11.03617 -10.93909 -10.82652 -10.49886 -10.32244 -10.15870 -9.90966 -9.76648 -9.73384 -9.67482 -9.50429 -8.98232 -8.47788 -8.11452 -6.76975 -5.94715 -3.36755 0.36264 1.00754 1.42029 1.93566 3.26293 3.30925 3.39682 3.48075 3.53358 3.56781 3.66287 4.29381 4.44557 4.52544 4.54735 4.79628 4.90011 5.05050 5.08406 5.12474 5.19509 5.29976 5.35654 5.40666 5.50520 5.54496 5.57839 5.71003 5.79595 5.96989 6.09129 6.13951 6.24423 6.32548 6.36163 6.45234 6.57618 6.68618 6.74643 6.78985 6.91915 7.03711 7.32675 7.92478 8.09433 8.43233 8.47080 9.02458 9.74786 10.16080 11.20169 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.003028 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.310610 B = 9244.741343 C = 9741.065830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.078 0.922 5 C 0.038 3.962 6 N -0.893 5.893 7 Si 0.871 3.129 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.149 3.851 12 C -0.113 4.113 13 H 0.074 0.926 14 C -0.136 4.136 15 C 0.120 3.880 16 N -0.601 5.601 17 C 0.597 3.403 18 O -0.531 6.531 19 C 0.025 3.975 20 C -0.228 4.228 21 S 0.196 5.804 22 C 0.052 3.948 23 C -0.083 4.083 24 C -0.170 4.170 25 C -0.160 4.160 26 N -0.433 5.433 27 C 0.132 3.868 28 H 0.006 0.994 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.190 0.810 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -19.937 -16.328 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.336 5.336 3 C -0.397 4.397 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.533 5.533 7 Si 0.701 3.299 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.135 4.135 13 H 0.093 0.907 14 C -0.175 4.175 15 C -0.003 4.003 16 N -0.333 5.333 17 C 0.381 3.619 18 O -0.408 6.408 19 C -0.110 4.110 20 C -0.370 4.370 21 S 0.453 5.547 22 C -0.227 4.227 23 C -0.104 4.104 24 C -0.208 4.208 25 C -0.199 4.199 26 N -0.148 5.148 27 C 0.011 3.989 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.207 0.793 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.495 -19.517 -16.891 26.200 hybrid contribution -0.041 0.077 1.606 1.609 sum 4.453 -19.440 -15.285 25.127 Atomic orbital electron populations 1.21072 0.84622 0.99027 0.97291 1.44066 1.00794 1.01997 1.86785 1.18755 1.06245 0.90821 1.23861 0.90403 1.25473 0.96917 0.96343 0.97540 1.69893 1.08548 1.35720 1.39186 0.87020 0.77938 0.80194 0.84710 1.21366 1.22928 1.19451 1.21124 0.96562 0.87917 0.92187 1.23014 0.97393 0.93005 1.00043 0.90747 1.22783 0.99447 0.98639 0.96581 1.21957 1.00652 0.81854 0.95862 1.48495 1.56842 1.09191 1.18750 1.16643 0.78774 0.86309 0.80150 1.90858 1.58653 1.14429 1.76863 1.20527 1.04642 0.89370 0.96423 1.26606 1.05131 1.06304 0.98962 1.82623 1.53625 0.95387 1.23033 1.26242 1.02018 0.99859 0.94548 1.20386 1.07013 0.85896 0.97151 1.23154 0.94144 1.03349 1.00134 1.23153 0.95264 1.01952 0.99488 1.67026 1.16059 1.04904 1.26816 1.22292 0.95595 0.93656 0.87362 0.97612 0.93658 0.95573 0.92747 0.93765 0.92630 0.90899 0.90568 0.91300 0.91513 0.79254 0.84754 0.88337 0.87169 0.87378 0.88212 0.90246 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.51 10.70 59.85 0.64 3.15 16 2 N -0.61 -14.54 2.41 -181.12 -0.44 -14.98 16 3 C -0.27 -7.47 8.94 -15.06 -0.13 -7.60 16 4 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 5 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 6 N -0.89 -27.44 13.97 55.49 0.78 -26.67 16 7 Si 0.87 22.19 25.09 -169.99 -4.26 17.92 16 8 H -0.29 -7.00 6.68 56.52 0.38 -6.62 16 9 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 11 C 0.15 3.14 4.07 -4.04 -0.02 3.12 16 12 C -0.11 -2.11 3.29 -88.47 -0.29 -2.41 16 13 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.14 -2.07 6.42 -24.90 -0.16 -2.23 16 15 C 0.12 1.89 5.45 -3.07 -0.02 1.87 16 16 N -0.60 -11.69 3.33 -171.85 -0.57 -12.26 16 17 C 0.60 11.95 7.83 -12.59 -0.10 11.85 16 18 O -0.53 -12.46 16.97 5.25 0.09 -12.37 16 19 C 0.02 0.40 6.62 -84.53 -0.56 -0.16 16 20 C -0.23 -2.99 10.62 29.65 0.31 -2.68 16 21 S 0.20 1.79 21.65 -107.50 -2.33 -0.54 16 22 C 0.05 0.56 6.99 -13.61 -0.10 0.47 16 23 C -0.08 -0.62 6.33 -91.77 -0.58 -1.21 16 24 C -0.17 -0.86 10.01 -26.73 -0.27 -1.13 16 25 C -0.16 -0.88 10.23 -26.73 -0.27 -1.15 16 26 N -0.43 -6.05 7.66 -8.51 -0.07 -6.12 16 27 C 0.13 2.89 5.36 -2.53 -0.01 2.87 16 28 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.04 0.90 8.01 -51.92 -0.42 0.49 16 30 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 32 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.06 1.30 3.35 -51.93 -0.17 1.12 16 34 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 37 H 0.07 1.02 7.63 -51.93 -0.40 0.63 16 38 H 0.19 2.34 8.03 -52.49 -0.42 1.92 16 39 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.10 0.47 7.21 -51.93 -0.37 0.10 16 41 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 2.00 8.00 -51.93 -0.42 1.59 16 45 H 0.09 2.13 8.03 -51.93 -0.42 1.72 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -33.87 375.48 -9.59 -43.47 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.80 Total: 0.11 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -1.64 Total: 5.78 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.30 Total: -60.02 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.26 Total: 17.92 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.33 Total: -0.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.87 -9.59 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494180821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.126 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds