Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36944 * 120.00022 * 2 1 4 4 H 1.07996 * 119.99670 * 321.74596 * 3 2 1 5 5 C 1.38812 * 119.99634 * 141.74060 * 3 2 1 6 6 N 1.31618 * 119.99607 * 157.42288 * 5 3 2 7 7 Si 1.86800 * 120.00302 * 337.42540 * 5 3 2 8 8 H 1.48498 * 109.46977 * 95.66144 * 7 5 3 9 9 H 1.48493 * 109.47115 * 215.66360 * 7 5 3 10 10 H 1.48502 * 109.46781 * 335.66613 * 7 5 3 11 11 C 1.46491 * 119.99843 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47469 * 89.99751 * 11 2 1 13 13 H 1.08999 * 110.88339 * 302.57394 * 12 11 2 14 14 C 1.55157 * 111.03883 * 178.66798 * 12 11 2 15 15 C 1.54316 * 102.86135 * 206.21586 * 14 12 11 16 16 N 1.47021 * 107.27895 * 22.52657 * 15 14 12 17 17 C 1.34771 * 125.65137 * 180.97161 * 16 15 14 18 18 O 1.21630 * 120.00077 * 179.69473 * 17 16 15 19 19 C 1.47270 * 119.99911 * 359.68495 * 17 16 15 20 20 C 1.35197 * 123.14155 * 179.70719 * 19 17 16 21 21 S 1.70945 * 108.82922 * 179.87246 * 20 19 17 22 22 C 1.70776 * 91.12538 * 0.33559 * 21 20 19 23 23 C 1.50702 * 124.71948 * 179.80691 * 22 21 20 24 24 C 1.53001 * 117.49848 * 8.61941 * 23 22 21 25 25 C 1.52998 * 117.49897 * 299.99442 * 23 22 21 26 26 N 1.28643 * 110.55775 * 359.80131 * 22 21 20 27 27 C 1.47424 * 108.70145 * 0.70219 * 16 15 14 28 28 H 1.08998 * 109.47210 * 265.65098 * 1 2 3 29 29 H 1.09007 * 109.47100 * 25.64427 * 1 2 3 30 30 H 1.08993 * 109.47339 * 145.64652 * 1 2 3 31 31 H 0.96999 * 120.00306 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47490 * 329.99506 * 11 2 1 33 33 H 1.09001 * 109.47073 * 210.00013 * 11 2 1 34 34 H 1.09001 * 110.72059 * 324.77295 * 14 12 11 35 35 H 1.08992 * 110.72000 * 87.86683 * 14 12 11 36 36 H 1.08995 * 109.98188 * 263.04508 * 15 14 12 37 37 H 1.09005 * 109.77268 * 141.88631 * 15 14 12 38 38 H 1.08000 * 125.59124 * 359.96972 * 20 19 17 39 39 H 1.08998 * 115.54985 * 154.32628 * 23 22 21 40 40 H 1.08999 * 117.50122 * 359.97438 * 24 23 22 41 41 H 1.08997 * 117.50126 * 145.02215 * 24 23 22 42 42 H 1.09003 * 117.50275 * 214.98002 * 25 23 22 43 43 H 1.09002 * 117.49924 * 359.97438 * 25 23 22 44 44 H 1.08999 * 110.36517 * 94.93906 * 27 16 15 45 45 H 1.08998 * 110.36957 * 217.14790 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7836 2.0208 -0.5791 5 6 3.3142 1.3150 0.7444 6 7 4.1989 2.2367 0.4278 7 14 3.6258 0.1805 2.1954 8 1 4.4690 -0.9612 1.7589 9 1 4.3256 0.9307 3.2689 10 1 2.3303 -0.3298 2.7118 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 1 1.5155 -1.8032 -1.9924 14 6 3.2568 -3.0359 -1.4864 15 6 3.9749 -2.9579 -2.8500 16 7 4.0437 -1.5385 -3.2268 17 6 4.5817 -1.0525 -4.3629 18 8 4.5785 0.1455 -4.5734 19 6 5.1737 -1.9719 -5.3493 20 6 5.7248 -1.5544 -6.5111 21 16 6.2990 -2.9163 -7.3701 22 6 5.7616 -3.9648 -6.1338 23 6 5.9116 -5.4642 -6.1545 24 6 6.7686 -6.0731 -7.2661 25 6 5.2465 -6.2249 -7.3033 26 7 5.2111 -3.2965 -5.1824 27 6 3.4207 -0.7352 -2.1590 28 1 -0.3633 -0.0779 1.0247 29 1 -0.3634 0.9265 -0.4448 30 1 -0.3633 -0.8483 -0.5799 31 1 5.0128 2.3267 0.9477 32 1 1.6084 -2.0286 0.5130 33 1 3.1498 -1.1386 0.5133 34 1 3.9769 -3.0769 -0.6690 35 1 2.5867 -3.8947 -1.4514 36 1 3.4118 -3.5136 -3.5998 37 1 4.9813 -3.3669 -2.7608 38 1 5.7928 -0.5285 -6.8417 39 1 5.9357 -5.9477 -5.1779 40 1 7.2235 -5.3893 -7.9828 41 1 7.3567 -6.9575 -7.0211 42 1 4.8333 -7.2091 -7.0827 43 1 4.7000 -5.6409 -8.0439 44 1 4.1791 -0.3752 -1.4638 45 1 2.8706 0.1030 -2.5866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494180821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = 50.265214 kcal Electronic energy + Delta-G solvation = -26886.885823 eV Core-core repulsion = 23225.364623 eV Total energy + Delta-G solvation = -3661.521200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78880 -40.28858 -39.00777 -37.93075 -37.21728 -33.92157 -32.97808 -31.60533 -30.25935 -28.33223 -27.93942 -26.61148 -25.11289 -23.48672 -23.27894 -22.84228 -21.56159 -21.40159 -20.37927 -19.34125 -18.83443 -17.62057 -17.41409 -17.18317 -16.96529 -16.55867 -16.09791 -15.75311 -15.37016 -15.11439 -14.99935 -14.72550 -14.68996 -14.44917 -14.18892 -13.83170 -13.63229 -13.33342 -13.29352 -13.20150 -12.93841 -12.66377 -12.56379 -12.37049 -12.15481 -12.02215 -11.88051 -11.80325 -11.64022 -11.50354 -11.37112 -11.29249 -10.78550 -10.62990 -10.60193 -9.96208 -9.62982 -8.74358 -8.18368 -5.57429 -0.61155 0.15205 0.49219 0.80632 1.27698 1.39433 1.51227 1.93829 2.14685 2.41543 2.68935 2.99159 3.03312 3.35148 3.53210 3.71162 3.79196 3.84817 3.97080 4.03588 4.05303 4.10453 4.34101 4.40852 4.45296 4.61101 4.63166 4.69239 4.75232 4.79104 4.79271 4.82434 4.96180 5.03523 5.05155 5.08256 5.11838 5.13821 5.18397 5.23740 5.28357 5.43084 5.94162 6.17432 6.31367 6.46770 6.94738 7.00218 7.64235 8.05104 9.01316 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018847 B = 0.003028 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.310610 B = 9244.741343 C = 9741.065830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.627 5.627 3 C -0.253 4.253 4 H 0.030 0.970 5 C -0.019 4.019 6 N -0.948 5.948 7 Si 0.940 3.060 8 H -0.270 1.270 9 H -0.311 1.311 10 H -0.252 1.252 11 C 0.144 3.856 12 C -0.103 4.103 13 H 0.087 0.913 14 C -0.122 4.122 15 C 0.124 3.876 16 N -0.605 5.605 17 C 0.585 3.415 18 O -0.586 6.586 19 C -0.003 4.003 20 C -0.247 4.247 21 S 0.298 5.702 22 C 0.047 3.953 23 C -0.107 4.107 24 C -0.154 4.154 25 C -0.151 4.151 26 N -0.456 5.456 27 C 0.142 3.858 28 H 0.019 0.981 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.260 0.740 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.187 0.813 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.035 0.965 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.931 -25.454 -17.243 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.352 5.352 3 C -0.383 4.383 4 H 0.047 0.953 5 C -0.215 4.215 6 N -0.592 5.592 7 Si 0.769 3.231 8 H -0.197 1.197 9 H -0.240 1.240 10 H -0.176 1.176 11 C 0.018 3.982 12 C -0.124 4.124 13 H 0.105 0.895 14 C -0.161 4.161 15 C 0.002 3.998 16 N -0.336 5.336 17 C 0.373 3.627 18 O -0.468 6.468 19 C -0.138 4.138 20 C -0.390 4.390 21 S 0.557 5.443 22 C -0.231 4.231 23 C -0.129 4.129 24 C -0.192 4.192 25 C -0.190 4.190 26 N -0.172 5.172 27 C 0.019 3.981 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.204 0.796 39 H 0.155 0.845 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.054 0.946 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.333 -25.122 -17.819 31.103 hybrid contribution 0.011 1.775 1.651 2.424 sum 4.344 -23.347 -16.168 28.729 Atomic orbital electron populations 1.21182 0.82241 1.00105 0.98554 1.44217 1.02403 1.01513 1.87023 1.18512 1.06167 0.91476 1.22162 0.95266 1.26083 0.96721 0.98502 1.00196 1.70055 1.09433 1.39006 1.40717 0.85896 0.78539 0.78423 0.80284 1.19672 1.23987 1.17612 1.21267 0.95887 0.87467 0.93553 1.22876 0.97414 0.93902 0.98223 0.89485 1.22821 0.99458 0.97775 0.96005 1.22134 1.01516 0.79437 0.96669 1.48622 1.56335 1.10578 1.18094 1.17390 0.78049 0.86481 0.80796 1.90802 1.60795 1.16988 1.78198 1.19985 1.07173 0.90115 0.96504 1.26870 1.04703 1.08327 0.99080 1.82221 1.50647 0.91480 1.19976 1.26896 1.00352 1.01561 0.94326 1.20550 1.10021 0.83851 0.98451 1.23311 0.94171 1.03544 0.98211 1.23282 0.95778 1.02178 0.97782 1.66961 1.17923 1.03716 1.28568 1.21883 0.94818 0.93972 0.87410 0.96276 0.94785 0.92026 0.93109 0.89713 0.94834 0.90820 0.86089 0.89652 0.90868 0.79610 0.84506 0.87892 0.85224 0.85741 0.88293 0.94634 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.77 10.70 127.77 1.37 6.14 16 2 N -0.63 -29.70 2.41 -726.95 -1.75 -31.45 16 3 C -0.25 -14.81 8.94 84.03 0.75 -14.06 16 4 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 5 C -0.02 -1.12 5.29 84.86 0.45 -0.67 16 6 N -0.95 -62.17 13.97 21.65 0.30 -61.87 16 7 Si 0.94 46.81 25.09 68.60 1.72 48.53 16 8 H -0.27 -12.61 6.68 99.48 0.66 -11.94 16 9 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 10 H -0.25 -11.74 7.11 99.48 0.71 -11.03 16 11 C 0.14 5.79 4.07 86.38 0.35 6.15 16 12 C -0.10 -3.73 3.29 -9.40 -0.03 -3.76 16 13 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 14 C -0.12 -3.35 6.42 31.78 0.20 -3.14 16 15 C 0.12 3.73 5.45 86.73 0.47 4.20 16 16 N -0.61 -24.58 3.33 -815.85 -2.71 -27.30 16 17 C 0.59 25.06 7.83 86.62 0.68 25.74 16 18 O -0.59 -30.24 16.97 -4.12 -0.07 -30.31 16 19 C 0.00 -0.10 6.62 40.56 0.27 0.17 16 20 C -0.25 -6.51 10.62 67.12 0.71 -5.79 16 21 S 0.30 4.69 21.65 -56.49 -1.22 3.47 16 22 C 0.05 0.90 6.99 88.58 0.62 1.52 16 23 C -0.11 -1.26 6.33 -11.54 -0.07 -1.33 16 24 C -0.15 -0.90 10.01 30.60 0.31 -0.60 16 25 C -0.15 -1.06 10.23 30.60 0.31 -0.75 16 26 N -0.46 -12.28 7.66 -180.83 -1.38 -13.66 16 27 C 0.14 6.60 5.36 86.86 0.47 7.07 16 28 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.03 1.36 8.01 -2.38 -0.02 1.34 16 30 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.26 16.24 8.31 -92.71 -0.77 15.46 16 32 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 33 H 0.03 1.52 3.35 -2.39 -0.01 1.51 16 34 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 2.32 7.53 -2.39 -0.02 2.30 16 37 H 0.07 2.13 7.63 -2.38 -0.02 2.12 16 38 H 0.19 4.86 8.03 -2.91 -0.02 4.83 16 39 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 0.51 7.21 -2.39 -0.02 0.50 16 41 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 1.94 8.00 -2.39 -0.02 1.92 16 45 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 Total: -1.00 -82.83 375.48 2.68 -80.14 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.95 Total: 11.57 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.86 Total: 20.87 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -5.55 Total: -134.28 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.07 Total: -30.31 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.72 Total: 48.53 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.22 Total: 3.47 kcal Total: -82.83 2.68 -80.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494180821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.408 kcal (2) G-P(sol) polarization free energy of solvation -82.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds