Wall clock time and date at job start Tue Mar 31 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00420 * 2 1 4 4 O 1.21625 * 120.00384 * 185.58647 * 3 2 1 5 5 C 1.47266 * 119.99525 * 5.58841 * 3 2 1 6 6 N 1.33563 * 123.14455 * 6.00028 * 5 3 2 7 7 C 1.28644 * 115.76437 * 180.02562 * 6 5 3 8 8 S 1.70765 * 110.56243 * 0.02562 * 7 6 5 9 9 C 1.35212 * 123.13858 * 185.71602 * 5 3 2 10 10 C 1.50696 * 125.58471 * 359.97438 * 9 5 3 11 11 C 1.53003 * 117.49848 * 188.74910 * 10 9 5 12 12 C 1.53006 * 117.49549 * 120.09092 * 10 9 5 13 13 C 1.46503 * 119.99774 * 180.02562 * 2 1 3 14 14 H 1.08999 * 109.46880 * 179.97438 * 13 2 1 15 15 C 1.52991 * 109.47441 * 59.99826 * 13 2 1 16 16 N 1.46494 * 109.47709 * 54.99975 * 15 13 2 17 17 C 1.36930 * 120.00698 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99732 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00323 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00018 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46996 * 59.99514 * 21 19 17 23 23 H 1.48498 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46591 * 299.99750 * 21 19 17 25 25 C 1.53003 * 109.46992 * 299.99176 * 13 2 1 26 26 C 1.52990 * 117.50364 * 248.75128 * 25 13 2 27 27 C 1.52994 * 117.49864 * 180.08693 * 25 13 2 28 28 H 1.08998 * 109.47618 * 275.47417 * 1 2 3 29 29 H 1.09005 * 109.47533 * 35.47075 * 1 2 3 30 30 H 1.09004 * 109.47571 * 155.46969 * 1 2 3 31 31 H 1.08003 * 124.71565 * 180.02562 * 7 6 5 32 32 H 1.09000 * 115.55317 * 334.42238 * 10 9 5 33 33 H 1.08999 * 117.49707 * 0.02562 * 11 10 9 34 34 H 1.08994 * 117.50132 * 145.01939 * 11 10 9 35 35 H 1.09008 * 117.49328 * 214.97735 * 12 10 9 36 36 H 1.08997 * 117.50109 * 359.97438 * 12 10 9 37 37 H 1.09007 * 109.47014 * 175.00301 * 15 13 2 38 38 H 1.09003 * 109.47024 * 294.99596 * 15 13 2 39 39 H 0.97006 * 119.99594 * 0.02562 * 16 15 13 40 40 H 0.97003 * 120.00053 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.54608 * 34.42414 * 25 13 2 42 42 H 1.08999 * 117.49835 * 0.02562 * 26 25 13 43 43 H 1.09001 * 117.50400 * 145.01920 * 26 25 13 44 44 H 1.09003 * 117.49584 * 214.98137 * 27 25 13 45 45 H 1.08994 * 117.50585 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3508 1.1697 -0.1025 5 6 1.4078 2.4395 0.1242 6 7 0.0942 2.5073 0.3563 7 6 -0.3987 3.6927 0.4382 8 16 0.8217 4.8664 0.2163 9 6 2.0047 3.6482 0.0195 10 6 3.4716 3.8829 -0.2333 11 6 3.9881 5.3183 -0.1151 12 6 3.8555 4.6631 -1.4923 13 6 2.1974 -1.2688 -0.0006 14 1 3.2690 -1.0696 -0.0009 15 6 1.8278 -2.0705 -1.2500 16 7 2.0705 -1.2555 -2.4429 17 6 1.8101 -1.7668 -3.6862 18 1 1.4261 -2.7712 -3.7875 19 6 2.0406 -0.9947 -4.8165 20 7 2.5090 0.2291 -4.6931 21 14 1.6847 -1.6920 -6.5126 22 1 0.2465 -2.0491 -6.6091 23 1 2.0123 -0.6756 -7.5444 24 1 2.5119 -2.9056 -6.7323 25 6 1.8278 -2.0715 1.2485 26 6 2.9086 -2.2554 2.3155 27 6 2.4943 -3.4361 1.4339 28 1 -0.3634 0.0980 1.0229 29 1 -0.3634 0.8370 -0.5964 30 1 -0.3634 -0.9349 -0.4267 31 1 -1.4396 3.9147 0.6217 32 1 4.1377 3.0806 0.0842 33 1 3.2668 6.0927 0.1459 34 1 4.9939 5.4603 0.2799 35 1 4.7744 4.3743 -2.0027 36 1 3.0471 5.0063 -2.1378 37 1 2.4375 -2.9729 -1.2963 38 1 0.7740 -2.3460 -1.2064 39 1 2.4157 -0.3536 -2.3520 40 1 2.6698 0.7688 -5.4829 41 1 0.7978 -1.9641 1.5886 42 1 3.8829 -1.8041 2.1280 43 1 2.5898 -2.2692 3.3578 44 1 1.9029 -4.2263 1.8966 45 1 3.1957 -3.7623 0.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507028950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:04 Heat of formation + Delta-G solvation = 94.058533 kcal Electronic energy + Delta-G solvation = -27543.228516 eV Core-core repulsion = 23883.606337 eV Total energy + Delta-G solvation = -3659.622179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56725 -38.84812 -37.34925 -37.05987 -35.04086 -33.86048 -31.17152 -30.35904 -28.36266 -26.40253 -25.81389 -24.09028 -22.63118 -22.38147 -22.10525 -21.86677 -21.45146 -19.53842 -18.73825 -18.06859 -17.05732 -16.44025 -16.15402 -15.65201 -15.36183 -14.81773 -14.62789 -14.29455 -14.20618 -14.08916 -13.74156 -13.26844 -13.00912 -12.94732 -12.42593 -12.21495 -12.02001 -11.97388 -11.66770 -11.53759 -11.44298 -11.38696 -10.99786 -10.96899 -10.77905 -10.63489 -10.53306 -10.26262 -10.11777 -9.75459 -9.62603 -9.57819 -9.31144 -9.22043 -8.79302 -8.75733 -8.06864 -6.81891 -5.65919 -2.94999 0.57617 1.22359 1.63954 2.18405 3.38445 3.48137 3.51926 3.53293 3.65711 3.93701 4.02002 4.20522 4.54543 4.63686 4.83798 4.87877 5.01968 5.04019 5.10969 5.18345 5.26098 5.51198 5.55297 5.62297 5.63788 5.72445 5.77851 5.80774 5.91240 5.93822 5.97022 6.05078 6.11276 6.13777 6.27644 6.33299 6.33815 6.41153 6.49837 6.62558 6.82897 7.10853 7.47633 7.75886 7.85716 8.51226 8.60298 9.62626 10.22298 10.58013 11.55935 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008340 B = 0.004954 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.702707 B = 5650.691307 C = 7516.015434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.577 5.577 3 C 0.598 3.402 4 O -0.531 6.531 5 C 0.009 3.991 6 N -0.425 5.425 7 C -0.016 4.016 8 S 0.184 5.816 9 C -0.142 4.142 10 C -0.087 4.087 11 C -0.181 4.181 12 C -0.154 4.154 13 C 0.163 3.837 14 H 0.100 0.900 15 C 0.148 3.852 16 N -0.727 5.727 17 C -0.239 4.239 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.928 5.928 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.157 4.157 26 C -0.179 4.179 27 C -0.170 4.170 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.202 0.798 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.387 0.613 40 H 0.254 0.746 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 8.724 15.757 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.307 5.307 3 C 0.384 3.616 4 O -0.408 6.408 5 C -0.125 4.125 6 N -0.139 5.139 7 C -0.315 4.315 8 S 0.440 5.560 9 C -0.265 4.265 10 C -0.107 4.107 11 C -0.219 4.219 12 C -0.192 4.192 13 C 0.059 3.941 14 H 0.118 0.882 15 C 0.020 3.980 16 N -0.372 5.372 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.576 5.576 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.176 4.176 26 C -0.216 4.216 27 C -0.207 4.207 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.219 0.781 32 H 0.168 0.832 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.587 9.193 15.626 18.481 hybrid contribution -0.082 -0.965 -1.112 1.475 sum -3.669 8.228 14.513 17.082 Atomic orbital electron populations 1.21870 0.78704 1.03209 1.01031 1.47345 1.07467 1.04705 1.71189 1.16931 0.86122 0.81996 0.76566 1.90718 1.13135 1.86168 1.50796 1.20317 0.88919 0.94762 1.08483 1.67337 1.09866 1.23626 1.13068 1.28381 1.05222 0.91079 1.06801 1.82625 0.98040 1.11576 1.63744 1.24759 1.00903 0.95984 1.04898 1.20733 0.89292 0.96595 1.04064 1.23156 1.02852 0.94393 1.01463 1.23073 1.03948 1.01861 0.90292 1.20942 0.97715 0.82237 0.93165 0.88199 1.20925 0.97760 0.93454 0.85878 1.42294 1.78714 1.15876 1.00278 1.19153 1.36183 0.97951 0.83716 0.91392 1.24731 1.02205 0.96326 0.97627 1.69691 1.51000 1.08666 1.28269 0.86308 0.77862 0.77722 0.84521 1.21408 1.21779 1.21328 1.22539 0.98083 0.99277 0.97740 1.23005 0.99726 1.03002 0.95906 1.22922 1.03775 0.91146 1.02904 0.93365 0.89660 0.91606 0.78134 0.83225 0.88951 0.87835 0.87509 0.88562 0.95350 0.96082 0.77870 0.93659 0.87675 0.88736 0.89243 0.88873 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 8.11 59.84 0.49 2.06 16 2 N -0.58 -10.81 2.24 -175.27 -0.39 -11.21 16 3 C 0.60 12.03 7.34 -12.59 -0.09 11.94 16 4 O -0.53 -11.75 13.49 5.26 0.07 -11.68 16 5 C 0.01 0.16 6.43 -84.52 -0.54 -0.39 16 6 N -0.42 -6.42 6.96 -12.36 -0.09 -6.51 16 7 C -0.02 -0.18 12.17 51.43 0.63 0.45 16 8 S 0.18 2.00 21.77 -107.50 -2.34 -0.34 16 9 C -0.14 -2.17 6.04 -35.39 -0.21 -2.39 16 10 C -0.09 -1.30 5.46 -91.77 -0.50 -1.80 16 11 C -0.18 -2.02 10.03 -26.69 -0.27 -2.29 16 12 C -0.15 -2.10 10.24 -26.69 -0.27 -2.37 16 13 C 0.16 3.01 2.41 -67.93 -0.16 2.85 16 14 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 15 C 0.15 3.16 5.29 -4.05 -0.02 3.14 16 16 N -0.73 -19.54 5.43 -59.91 -0.33 -19.86 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.24 13.06 55.49 0.72 -28.51 16 21 Si 0.90 23.10 29.55 -169.99 -5.02 18.08 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.16 -2.28 5.21 -90.63 -0.47 -2.75 16 26 C -0.18 -2.31 10.18 -26.70 -0.27 -2.58 16 27 C -0.17 -2.16 9.80 -26.70 -0.26 -2.42 16 28 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 29 H 0.09 1.53 5.86 -51.93 -0.30 1.22 16 30 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 31 H 0.20 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.15 2.57 6.08 -51.93 -0.32 2.25 16 33 H 0.09 0.89 7.28 -51.93 -0.38 0.52 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.03 0.61 7.48 -51.92 -0.39 0.22 16 38 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 39 H 0.39 11.32 7.06 -40.82 -0.29 11.03 16 40 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.11 1.44 7.49 -51.93 -0.39 1.05 16 42 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.10 1.32 7.66 -51.93 -0.40 0.93 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -34.31 378.03 -10.32 -44.63 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.42 Total: 13.84 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.22 Total: -4.13 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.08 Total: -66.09 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.34 Total: -0.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.31 -10.32 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507028950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.686 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds