Wall clock time and date at job start Tue Mar 31 2020 18:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00420 * 2 1 4 4 O 1.21625 * 120.00384 * 185.58647 * 3 2 1 5 5 C 1.47266 * 119.99525 * 5.58841 * 3 2 1 6 6 N 1.33563 * 123.14455 * 6.00028 * 5 3 2 7 7 C 1.28644 * 115.76437 * 180.02562 * 6 5 3 8 8 S 1.70765 * 110.56243 * 0.02562 * 7 6 5 9 9 C 1.35212 * 123.13858 * 185.71602 * 5 3 2 10 10 C 1.50696 * 125.58471 * 359.97438 * 9 5 3 11 11 C 1.53003 * 117.49848 * 188.74910 * 10 9 5 12 12 C 1.53006 * 117.49549 * 120.09092 * 10 9 5 13 13 C 1.46503 * 119.99774 * 180.02562 * 2 1 3 14 14 H 1.08999 * 109.46880 * 179.97438 * 13 2 1 15 15 C 1.52991 * 109.47441 * 59.99826 * 13 2 1 16 16 N 1.46494 * 109.47709 * 54.99975 * 15 13 2 17 17 C 1.36930 * 120.00698 * 180.02562 * 16 15 13 18 18 H 1.08006 * 119.99732 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00323 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00018 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46996 * 59.99514 * 21 19 17 23 23 H 1.48498 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46591 * 299.99750 * 21 19 17 25 25 C 1.53003 * 109.46992 * 299.99176 * 13 2 1 26 26 C 1.52990 * 117.50364 * 248.75128 * 25 13 2 27 27 C 1.52994 * 117.49864 * 180.08693 * 25 13 2 28 28 H 1.08998 * 109.47618 * 275.47417 * 1 2 3 29 29 H 1.09005 * 109.47533 * 35.47075 * 1 2 3 30 30 H 1.09004 * 109.47571 * 155.46969 * 1 2 3 31 31 H 1.08003 * 124.71565 * 180.02562 * 7 6 5 32 32 H 1.09000 * 115.55317 * 334.42238 * 10 9 5 33 33 H 1.08999 * 117.49707 * 0.02562 * 11 10 9 34 34 H 1.08994 * 117.50132 * 145.01939 * 11 10 9 35 35 H 1.09008 * 117.49328 * 214.97735 * 12 10 9 36 36 H 1.08997 * 117.50109 * 359.97438 * 12 10 9 37 37 H 1.09007 * 109.47014 * 175.00301 * 15 13 2 38 38 H 1.09003 * 109.47024 * 294.99596 * 15 13 2 39 39 H 0.97006 * 119.99594 * 0.02562 * 16 15 13 40 40 H 0.97003 * 120.00053 * 180.02562 * 20 19 17 41 41 H 1.09003 * 115.54608 * 34.42414 * 25 13 2 42 42 H 1.08999 * 117.49835 * 0.02562 * 26 25 13 43 43 H 1.09001 * 117.50400 * 145.01920 * 26 25 13 44 44 H 1.09003 * 117.49584 * 214.98137 * 27 25 13 45 45 H 1.08994 * 117.50585 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3508 1.1697 -0.1025 5 6 1.4078 2.4395 0.1242 6 7 0.0942 2.5073 0.3563 7 6 -0.3987 3.6927 0.4382 8 16 0.8217 4.8664 0.2163 9 6 2.0047 3.6482 0.0195 10 6 3.4716 3.8829 -0.2333 11 6 3.9881 5.3183 -0.1151 12 6 3.8555 4.6631 -1.4923 13 6 2.1974 -1.2688 -0.0006 14 1 3.2690 -1.0696 -0.0009 15 6 1.8278 -2.0705 -1.2500 16 7 2.0705 -1.2555 -2.4429 17 6 1.8101 -1.7668 -3.6862 18 1 1.4261 -2.7712 -3.7875 19 6 2.0406 -0.9947 -4.8165 20 7 2.5090 0.2291 -4.6931 21 14 1.6847 -1.6920 -6.5126 22 1 0.2465 -2.0491 -6.6091 23 1 2.0123 -0.6756 -7.5444 24 1 2.5119 -2.9056 -6.7323 25 6 1.8278 -2.0715 1.2485 26 6 2.9086 -2.2554 2.3155 27 6 2.4943 -3.4361 1.4339 28 1 -0.3634 0.0980 1.0229 29 1 -0.3634 0.8370 -0.5964 30 1 -0.3634 -0.9349 -0.4267 31 1 -1.4396 3.9147 0.6217 32 1 4.1377 3.0806 0.0842 33 1 3.2668 6.0927 0.1459 34 1 4.9939 5.4603 0.2799 35 1 4.7744 4.3743 -2.0027 36 1 3.0471 5.0063 -2.1378 37 1 2.4375 -2.9729 -1.2963 38 1 0.7740 -2.3460 -1.2064 39 1 2.4157 -0.3536 -2.3520 40 1 2.6698 0.7688 -5.4829 41 1 0.7978 -1.9641 1.5886 42 1 3.8829 -1.8041 2.1280 43 1 2.5898 -2.2692 3.3578 44 1 1.9029 -4.2263 1.8966 45 1 3.1957 -3.7623 0.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507028950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:03 Heat of formation + Delta-G solvation = 72.987421 kcal Electronic energy + Delta-G solvation = -27544.142228 eV Core-core repulsion = 23883.606337 eV Total energy + Delta-G solvation = -3660.535891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82694 -40.12125 -38.62878 -38.17476 -36.59718 -35.70364 -33.18985 -31.50931 -30.04697 -27.78619 -27.13342 -25.88678 -24.06108 -23.45442 -23.15778 -22.99656 -22.87621 -20.87891 -20.11411 -19.19166 -19.15920 -17.75341 -17.36079 -16.90581 -16.78551 -16.50282 -16.01239 -15.51867 -15.49738 -15.35115 -15.08538 -14.86258 -14.75244 -14.54823 -13.90304 -13.61498 -13.29796 -13.18182 -13.07441 -12.90507 -12.84894 -12.74761 -12.54981 -12.42879 -12.23120 -12.16238 -12.04787 -11.79830 -11.66375 -11.34856 -11.00297 -10.93194 -10.84301 -10.47515 -10.20082 -9.89831 -9.47856 -9.01883 -7.93843 -5.24825 -0.48921 0.24860 0.64124 1.01825 1.42581 1.47180 1.53099 2.02216 2.32163 2.53255 2.85524 2.89844 3.15606 3.37703 3.45411 3.58038 3.76383 3.94045 3.99141 4.01026 4.07669 4.13332 4.19335 4.28180 4.34422 4.44502 4.56863 4.60125 4.64439 4.76075 4.76728 4.83879 4.88479 4.91706 5.01226 5.04685 5.11357 5.11873 5.17821 5.25747 5.30550 5.44716 5.67145 6.24397 6.33625 6.51755 7.15446 7.30723 8.06303 8.31072 9.28815 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008340 B = 0.004954 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.702707 B = 5650.691307 C = 7516.015434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.580 5.580 3 C 0.582 3.418 4 O -0.571 6.571 5 C -0.026 4.026 6 N -0.450 5.450 7 C -0.012 4.012 8 S 0.274 5.726 9 C -0.167 4.167 10 C -0.117 4.117 11 C -0.140 4.140 12 C -0.168 4.168 13 C 0.171 3.829 14 H 0.067 0.933 15 C 0.149 3.851 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.078 0.922 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.977 3.023 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.168 4.168 26 C -0.171 4.171 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.246 0.754 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 9.408 16.986 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.309 5.309 3 C 0.370 3.630 4 O -0.451 6.451 5 C -0.160 4.160 6 N -0.165 5.165 7 C -0.311 4.311 8 S 0.532 5.468 9 C -0.292 4.292 10 C -0.137 4.137 11 C -0.177 4.177 12 C -0.206 4.206 13 C 0.067 3.933 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.384 5.384 17 C -0.378 4.378 18 H 0.096 0.904 19 C -0.269 4.269 20 N -0.618 5.618 21 Si 0.805 3.195 22 H -0.201 1.201 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.187 4.187 26 C -0.208 4.208 27 C -0.194 4.194 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.262 0.738 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.808 9.834 16.889 20.388 hybrid contribution 0.595 -1.117 -1.448 1.923 sum -5.213 8.717 15.441 18.482 Atomic orbital electron populations 1.21871 0.77423 1.02390 1.02264 1.47486 1.08257 1.04486 1.70715 1.17542 0.86120 0.83378 0.76007 1.90681 1.14810 1.86959 1.52652 1.20129 0.90268 0.94124 1.11449 1.67282 1.08706 1.25643 1.14825 1.29172 1.07279 0.90413 1.04247 1.82184 0.94915 1.08303 1.61441 1.25056 1.02093 0.97497 1.04544 1.20610 0.89418 0.98005 1.05716 1.23278 1.04098 0.92065 0.98237 1.23100 1.03635 1.02791 0.91120 1.20728 0.96034 0.82587 0.93904 0.91430 1.21080 0.98098 0.93262 0.85357 1.42506 1.78675 1.15682 1.01496 1.19611 1.35151 0.98254 0.84797 0.90425 1.25635 1.02723 0.96733 1.01767 1.69897 1.52784 1.10228 1.28927 0.85167 0.78182 0.76924 0.79193 1.20084 1.22241 1.20329 1.22411 0.99334 1.00334 0.96642 1.23043 0.98348 1.02558 0.96831 1.23015 1.03085 0.91033 1.02315 0.90909 0.90860 0.91955 0.73816 0.86638 0.86549 0.86051 0.88420 0.88580 0.95023 0.95035 0.79768 0.94272 0.86135 0.90309 0.86697 0.86011 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.46 8.11 127.77 1.04 4.49 16 2 N -0.58 -22.76 2.24 -826.67 -1.86 -24.62 16 3 C 0.58 25.07 7.34 86.62 0.64 25.71 16 4 O -0.57 -27.82 13.49 -4.11 -0.06 -27.88 16 5 C -0.03 -0.95 6.43 40.56 0.26 -0.69 16 6 N -0.45 -13.35 6.96 -193.02 -1.34 -14.70 16 7 C -0.01 -0.25 12.17 130.71 1.59 1.34 16 8 S 0.27 5.26 21.77 -56.49 -1.23 4.03 16 9 C -0.17 -5.20 6.04 24.99 0.15 -5.05 16 10 C -0.12 -3.68 5.46 -11.54 -0.06 -3.74 16 11 C -0.14 -2.96 10.03 30.62 0.31 -2.65 16 12 C -0.17 -4.75 10.24 30.62 0.31 -4.44 16 13 C 0.17 6.62 2.41 44.99 0.11 6.73 16 14 H 0.07 3.03 6.67 -2.39 -0.02 3.02 16 15 C 0.15 6.55 5.29 86.38 0.46 7.00 16 16 N -0.74 -41.44 5.43 -343.47 -1.87 -43.30 16 17 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -63.25 13.06 21.65 0.28 -62.97 16 21 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 C -0.17 -4.81 5.21 -10.80 -0.06 -4.87 16 26 C -0.17 -4.27 10.18 30.61 0.31 -3.96 16 27 C -0.16 -3.79 9.80 30.62 0.30 -3.49 16 28 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 29 H 0.07 2.67 5.86 -2.38 -0.01 2.66 16 30 H 0.06 2.08 6.54 -2.38 -0.02 2.07 16 31 H 0.25 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.12 4.41 6.08 -2.39 -0.01 4.40 16 33 H 0.12 1.89 7.28 -2.39 -0.02 1.87 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.85 8.14 -2.38 -0.02 2.84 16 36 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.03 1.38 7.48 -2.38 -0.02 1.36 16 38 H 0.03 1.34 6.87 -2.39 -0.02 1.32 16 39 H 0.37 23.01 7.06 -92.70 -0.65 22.35 16 40 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 41 H 0.12 3.10 7.49 -2.39 -0.02 3.08 16 42 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 43 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.09 2.32 7.66 -2.39 -0.02 2.30 16 Total: -1.00 -79.84 378.03 2.98 -76.86 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: 0.37 Total: 43.90 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.66 Total: -1.57 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -4.78 Total: -145.58 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.06 Total: -27.88 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.23 Total: 4.03 kcal Total: -79.84 2.98 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507028950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.847 kcal (2) G-P(sol) polarization free energy of solvation -79.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds