Wall clock time and date at job start Tue Mar 31 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99856 * 2 1 4 4 H 1.07996 * 120.00476 * 198.54458 * 3 2 1 5 5 C 1.38823 * 120.00050 * 18.54635 * 3 2 1 6 6 N 1.31615 * 119.99901 * 15.84095 * 5 3 2 7 7 Si 1.86794 * 119.99914 * 195.84286 * 5 3 2 8 8 H 1.48499 * 109.47488 * 5.01363 * 7 5 3 9 9 H 1.48512 * 109.46987 * 125.01024 * 7 5 3 10 10 H 1.48501 * 109.47229 * 245.00833 * 7 5 3 11 11 C 1.46495 * 120.00337 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46909 * 264.12502 * 11 2 1 13 13 H 1.09004 * 109.87753 * 304.24623 * 12 11 2 14 14 C 1.54325 * 109.88350 * 65.26354 * 12 11 2 15 15 C 1.55154 * 103.10298 * 141.67532 * 14 12 11 16 16 C 1.55119 * 101.48890 * 324.71908 * 15 14 12 17 17 N 1.47026 * 110.01223 * 183.14742 * 12 11 2 18 18 C 1.34778 * 125.64757 * 61.60552 * 17 12 11 19 19 O 1.21632 * 119.99612 * 5.19383 * 18 17 12 20 20 C 1.47267 * 120.00075 * 185.19615 * 18 17 12 21 21 N 1.33560 * 123.13887 * 1.46527 * 20 18 17 22 22 C 1.28647 * 115.76413 * 179.83243 * 21 20 18 23 23 S 1.70778 * 110.55844 * 0.42276 * 22 21 20 24 24 C 1.35207 * 123.13903 * 181.76260 * 20 18 17 25 25 C 1.50696 * 125.58725 * 359.92189 * 24 20 18 26 26 C 1.53005 * 117.49530 * 181.12121 * 25 24 20 27 27 C 1.53005 * 117.49464 * 112.46309 * 25 24 20 28 28 H 1.08997 * 109.47571 * 272.06440 * 1 2 3 29 29 H 1.09000 * 109.47153 * 32.06957 * 1 2 3 30 30 H 1.09002 * 109.47287 * 152.06422 * 1 2 3 31 31 H 0.96995 * 120.00511 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47606 * 144.12650 * 11 2 1 33 33 H 1.08994 * 109.47100 * 24.12219 * 11 2 1 34 34 H 1.09004 * 110.71900 * 260.12551 * 14 12 11 35 35 H 1.09002 * 110.71936 * 23.22395 * 14 12 11 36 36 H 1.09006 * 111.00788 * 82.66434 * 15 14 12 37 37 H 1.09004 * 111.00715 * 206.51082 * 15 14 12 38 38 H 1.09006 * 110.20432 * 277.95880 * 16 15 14 39 39 H 1.08995 * 110.51839 * 155.75491 * 16 15 14 40 40 H 1.07996 * 124.72067 * 180.18842 * 22 21 20 41 41 H 1.08998 * 115.55366 * 326.79328 * 25 24 20 42 42 H 1.08992 * 117.50075 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49454 * 145.02549 * 26 25 24 44 44 H 1.08997 * 117.49786 * 214.97750 * 27 25 24 45 45 H 1.08998 * 117.50248 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1875 1.2103 -0.2974 5 6 1.5095 2.3569 0.3824 6 7 0.3669 2.3000 1.0330 7 14 2.2700 4.0133 -0.0265 8 1 3.4813 3.8095 -0.8611 9 1 1.2870 4.8383 -0.7740 10 1 2.6461 4.7092 1.2303 11 6 2.1975 -1.2686 -0.0006 12 6 2.5804 -1.6371 1.4342 13 1 3.1481 -0.8240 1.8867 14 6 1.3079 -1.9131 2.2626 15 6 1.7252 -3.1072 3.1610 16 6 2.6574 -3.9000 2.2078 17 7 3.3812 -2.8701 1.4404 18 6 4.5790 -3.0317 0.8441 19 8 5.1285 -2.0836 0.3164 20 6 5.2224 -4.3564 0.8313 21 7 4.6630 -5.4450 1.3659 22 6 5.3486 -6.5295 1.2720 23 16 6.8283 -6.2361 0.4715 24 6 6.4371 -4.5828 0.2824 25 6 7.3037 -3.5476 -0.3872 26 6 8.6391 -4.0143 -0.9703 27 6 8.6142 -3.1684 0.3054 28 1 -0.3634 0.0370 1.0269 29 1 -0.3633 0.8708 -0.5456 30 1 -0.3634 -0.9079 -0.4814 31 1 -0.0806 3.1182 1.2999 32 1 3.1003 -1.1667 -0.6027 33 1 1.5670 -2.0521 -0.4209 34 1 1.0475 -1.0461 2.8699 35 1 0.4776 -2.1907 1.6132 36 1 2.2692 -2.7630 4.0406 37 1 0.8580 -3.7020 3.4480 38 1 2.0672 -4.5265 1.5389 39 1 3.3577 -4.5100 2.7783 40 1 5.0339 -7.4908 1.6503 41 1 6.7697 -2.7605 -0.9194 42 1 8.8906 -5.0700 -0.8699 43 1 8.9837 -3.5338 -1.8860 44 1 8.9426 -2.1320 0.2284 45 1 8.8495 -3.6674 1.2455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570540624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:46 Heat of formation + Delta-G solvation = 74.480416 kcal Electronic energy + Delta-G solvation = -27355.064351 eV Core-core repulsion = 23694.593201 eV Total energy + Delta-G solvation = -3660.471150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65714 -38.93475 -37.47668 -36.89582 -35.19236 -31.58763 -31.15010 -30.51201 -28.95275 -26.19820 -25.94552 -25.01437 -23.45122 -22.63102 -22.18392 -21.47077 -20.98427 -19.97151 -18.64420 -17.99882 -16.61154 -16.45011 -16.15295 -15.75845 -15.36816 -14.73472 -14.56614 -14.36891 -14.30524 -13.65548 -13.46638 -13.25274 -12.98709 -12.91445 -12.51532 -12.23298 -12.12658 -11.79402 -11.77015 -11.65833 -11.28277 -11.17087 -10.87364 -10.80439 -10.68274 -10.59128 -10.44272 -10.23413 -10.01651 -9.86392 -9.78539 -9.66449 -9.50109 -9.43420 -8.99669 -8.46965 -8.14352 -6.69667 -5.65785 -3.04586 0.36092 1.00645 1.42846 1.99552 3.33514 3.45004 3.51588 3.52136 3.56460 3.73830 4.00225 4.33121 4.59813 4.62696 4.79777 4.81573 4.99170 5.04787 5.27275 5.34928 5.38146 5.41729 5.49957 5.61535 5.70454 5.73053 5.83683 5.88244 5.95731 6.07656 6.09800 6.13583 6.26704 6.44188 6.53220 6.62913 6.76761 6.80704 6.95535 7.13554 7.28547 7.46120 7.75645 7.93067 7.95308 8.45676 8.52676 9.33182 9.96451 10.43645 11.40814 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.003558 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.702452 B = 7868.693272 C = 9359.892761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.245 4.245 4 H 0.071 0.929 5 C -0.002 4.002 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.148 3.852 12 C 0.116 3.884 13 H 0.078 0.922 14 C -0.110 4.110 15 C -0.140 4.140 16 C 0.112 3.888 17 N -0.595 5.595 18 C 0.599 3.401 19 O -0.524 6.524 20 C 0.010 3.990 21 N -0.430 5.430 22 C -0.012 4.012 23 S 0.188 5.812 24 C -0.149 4.149 25 C -0.082 4.082 26 C -0.180 4.180 27 C -0.156 4.156 28 H 0.025 0.975 29 H 0.050 0.950 30 H -0.006 1.006 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.203 0.797 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 -21.377 1.595 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.318 5.318 3 C -0.374 4.374 4 H 0.089 0.911 5 C -0.199 4.199 6 N -0.556 5.556 7 Si 0.731 3.269 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.020 3.980 12 C 0.012 3.988 13 H 0.096 0.904 14 C -0.148 4.148 15 C -0.178 4.178 16 C -0.011 4.011 17 N -0.327 5.327 18 C 0.385 3.615 19 O -0.401 6.401 20 C -0.124 4.124 21 N -0.144 5.144 22 C -0.311 4.311 23 S 0.444 5.556 24 C -0.273 4.273 25 C -0.102 4.102 26 C -0.217 4.217 27 C -0.195 4.195 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.220 0.780 41 H 0.165 0.835 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.216 -21.389 1.340 24.669 hybrid contribution -0.304 1.574 0.142 1.609 sum 11.913 -19.815 1.482 23.168 Atomic orbital electron populations 1.20843 0.82421 0.95983 0.98843 1.43972 1.01863 1.00530 1.85455 1.19327 0.96076 0.84503 1.37514 0.91088 1.24884 0.97804 0.98108 0.99086 1.70101 1.18193 1.26255 1.41074 0.86225 0.78451 0.84421 0.77766 1.20333 1.21733 1.21872 1.21106 0.96007 0.88220 0.92679 1.22714 0.90609 0.84794 1.00714 0.90354 1.22537 0.96788 0.97854 0.97604 1.22913 0.99122 0.97771 0.98023 1.22390 0.94741 0.90435 0.93575 1.48501 1.18031 1.14925 1.51269 1.16575 0.80061 0.85489 0.79423 1.90803 1.63128 1.39883 1.46247 1.20463 0.93631 0.94664 1.03682 1.67177 1.32292 0.97836 1.17071 1.28379 0.95861 1.01876 1.05008 1.82714 1.21010 1.00458 1.51382 1.24769 0.99005 0.99310 1.04187 1.20616 0.88010 0.98552 1.03070 1.23161 0.99848 1.00267 0.98465 1.23043 0.98677 1.01462 0.96271 0.95678 0.93091 0.98799 0.93983 0.92976 0.94460 0.89882 0.91072 0.91317 0.90467 0.91905 0.89749 0.78038 0.83521 0.88840 0.87617 0.87584 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 8.04 59.84 0.48 4.58 16 2 N -0.60 -15.54 2.78 -181.13 -0.50 -16.04 16 3 C -0.24 -7.02 9.68 -15.06 -0.15 -7.16 16 4 H 0.07 2.08 7.88 -52.49 -0.41 1.67 16 5 C 0.00 -0.04 5.03 -17.43 -0.09 -0.13 16 6 N -0.91 -26.75 10.63 55.49 0.59 -26.16 16 7 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 8 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 10 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 11 C 0.15 3.37 5.13 -4.05 -0.02 3.35 16 12 C 0.12 2.39 3.06 -66.95 -0.21 2.18 16 13 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 14 C -0.11 -1.97 5.63 -24.90 -0.14 -2.11 16 15 C -0.14 -1.97 7.11 -24.47 -0.17 -2.14 16 16 C 0.11 1.63 5.83 -2.41 -0.01 1.62 16 17 N -0.59 -10.71 3.07 -164.19 -0.50 -11.21 16 18 C 0.60 11.12 7.56 -12.59 -0.10 11.03 16 19 O -0.52 -11.13 13.49 5.25 0.07 -11.06 16 20 C 0.01 0.15 6.60 -84.52 -0.56 -0.41 16 21 N -0.43 -5.49 7.50 -12.36 -0.09 -5.59 16 22 C -0.01 -0.11 12.17 51.43 0.63 0.52 16 23 S 0.19 1.58 21.72 -107.50 -2.33 -0.75 16 24 C -0.15 -1.90 6.05 -35.39 -0.21 -2.11 16 25 C -0.08 -1.03 5.20 -91.77 -0.48 -1.51 16 26 C -0.18 -1.63 10.04 -26.69 -0.27 -1.90 16 27 C -0.16 -1.63 10.24 -26.69 -0.27 -1.90 16 28 H 0.02 0.65 7.45 -51.93 -0.39 0.26 16 29 H 0.05 1.38 6.90 -51.93 -0.36 1.03 16 30 H -0.01 -0.14 7.83 -51.93 -0.41 -0.55 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.05 1.28 6.89 -51.93 -0.36 0.92 16 33 H 0.04 0.80 7.73 -51.93 -0.40 0.39 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.16 6.41 -51.93 -0.33 0.83 16 40 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 2.23 6.52 -51.93 -0.34 1.90 16 42 H 0.09 0.72 7.24 -51.93 -0.38 0.34 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -32.79 371.13 -10.47 -43.25 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.69 Total: 0.40 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.57 Total: 3.89 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.51 Total: -58.99 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.33 Total: -0.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -10.47 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570540624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.734 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds