Wall clock time and date at job start Tue Mar 31 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99856 * 2 1 4 4 H 1.07996 * 120.00476 * 198.54458 * 3 2 1 5 5 C 1.38823 * 120.00050 * 18.54635 * 3 2 1 6 6 N 1.31615 * 119.99901 * 15.84095 * 5 3 2 7 7 Si 1.86794 * 119.99914 * 195.84286 * 5 3 2 8 8 H 1.48499 * 109.47488 * 5.01363 * 7 5 3 9 9 H 1.48512 * 109.46987 * 125.01024 * 7 5 3 10 10 H 1.48501 * 109.47229 * 245.00833 * 7 5 3 11 11 C 1.46495 * 120.00337 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46909 * 264.12502 * 11 2 1 13 13 H 1.09004 * 109.87753 * 304.24623 * 12 11 2 14 14 C 1.54325 * 109.88350 * 65.26354 * 12 11 2 15 15 C 1.55154 * 103.10298 * 141.67532 * 14 12 11 16 16 C 1.55119 * 101.48890 * 324.71908 * 15 14 12 17 17 N 1.47026 * 110.01223 * 183.14742 * 12 11 2 18 18 C 1.34778 * 125.64757 * 61.60552 * 17 12 11 19 19 O 1.21632 * 119.99612 * 5.19383 * 18 17 12 20 20 C 1.47267 * 120.00075 * 185.19615 * 18 17 12 21 21 N 1.33560 * 123.13887 * 1.46527 * 20 18 17 22 22 C 1.28647 * 115.76413 * 179.83243 * 21 20 18 23 23 S 1.70778 * 110.55844 * 0.42276 * 22 21 20 24 24 C 1.35207 * 123.13903 * 181.76260 * 20 18 17 25 25 C 1.50696 * 125.58725 * 359.92189 * 24 20 18 26 26 C 1.53005 * 117.49530 * 181.12121 * 25 24 20 27 27 C 1.53005 * 117.49464 * 112.46309 * 25 24 20 28 28 H 1.08997 * 109.47571 * 272.06440 * 1 2 3 29 29 H 1.09000 * 109.47153 * 32.06957 * 1 2 3 30 30 H 1.09002 * 109.47287 * 152.06422 * 1 2 3 31 31 H 0.96995 * 120.00511 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47606 * 144.12650 * 11 2 1 33 33 H 1.08994 * 109.47100 * 24.12219 * 11 2 1 34 34 H 1.09004 * 110.71900 * 260.12551 * 14 12 11 35 35 H 1.09002 * 110.71936 * 23.22395 * 14 12 11 36 36 H 1.09006 * 111.00788 * 82.66434 * 15 14 12 37 37 H 1.09004 * 111.00715 * 206.51082 * 15 14 12 38 38 H 1.09006 * 110.20432 * 277.95880 * 16 15 14 39 39 H 1.08995 * 110.51839 * 155.75491 * 16 15 14 40 40 H 1.07996 * 124.72067 * 180.18842 * 22 21 20 41 41 H 1.08998 * 115.55366 * 326.79328 * 25 24 20 42 42 H 1.08992 * 117.50075 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49454 * 145.02549 * 26 25 24 44 44 H 1.08997 * 117.49786 * 214.97750 * 27 25 24 45 45 H 1.08998 * 117.50248 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1875 1.2103 -0.2974 5 6 1.5095 2.3569 0.3824 6 7 0.3669 2.3000 1.0330 7 14 2.2700 4.0133 -0.0265 8 1 3.4813 3.8095 -0.8611 9 1 1.2870 4.8383 -0.7740 10 1 2.6461 4.7092 1.2303 11 6 2.1975 -1.2686 -0.0006 12 6 2.5804 -1.6371 1.4342 13 1 3.1481 -0.8240 1.8867 14 6 1.3079 -1.9131 2.2626 15 6 1.7252 -3.1072 3.1610 16 6 2.6574 -3.9000 2.2078 17 7 3.3812 -2.8701 1.4404 18 6 4.5790 -3.0317 0.8441 19 8 5.1285 -2.0836 0.3164 20 6 5.2224 -4.3564 0.8313 21 7 4.6630 -5.4450 1.3659 22 6 5.3486 -6.5295 1.2720 23 16 6.8283 -6.2361 0.4715 24 6 6.4371 -4.5828 0.2824 25 6 7.3037 -3.5476 -0.3872 26 6 8.6391 -4.0143 -0.9703 27 6 8.6142 -3.1684 0.3054 28 1 -0.3634 0.0370 1.0269 29 1 -0.3633 0.8708 -0.5456 30 1 -0.3634 -0.9079 -0.4814 31 1 -0.0806 3.1182 1.2999 32 1 3.1003 -1.1667 -0.6027 33 1 1.5670 -2.0521 -0.4209 34 1 1.0475 -1.0461 2.8699 35 1 0.4776 -2.1907 1.6132 36 1 2.2692 -2.7630 4.0406 37 1 0.8580 -3.7020 3.4480 38 1 2.0672 -4.5265 1.5389 39 1 3.3577 -4.5100 2.7783 40 1 5.0339 -7.4908 1.6503 41 1 6.7697 -2.7605 -0.9194 42 1 8.8906 -5.0700 -0.8699 43 1 8.9837 -3.5338 -1.8860 44 1 8.9426 -2.1320 0.2284 45 1 8.8495 -3.6674 1.2455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570540624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:45 Heat of formation + Delta-G solvation = 54.840899 kcal Electronic energy + Delta-G solvation = -27355.915985 eV Core-core repulsion = 23694.593201 eV Total energy + Delta-G solvation = -3661.322783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79557 -40.18710 -38.60915 -38.10782 -37.13002 -33.57025 -32.61498 -31.46737 -30.65143 -28.03571 -27.17241 -26.80744 -24.71890 -23.45902 -23.08805 -22.96481 -22.53047 -21.43811 -19.82009 -19.08470 -18.70474 -17.67904 -17.37006 -17.07680 -16.54086 -16.44630 -15.74860 -15.56020 -15.50792 -15.17656 -15.03788 -14.76567 -14.75085 -14.30724 -13.87147 -13.61633 -13.40102 -13.14341 -13.11540 -12.96589 -12.81252 -12.54329 -12.52585 -12.35826 -12.10377 -12.05869 -12.00503 -11.97903 -11.69036 -11.61531 -11.54722 -10.89439 -10.65000 -10.57127 -10.24157 -9.97215 -9.60569 -8.82220 -7.88098 -5.29615 -0.50885 0.22486 0.63167 0.99086 1.40847 1.41942 1.53646 2.01400 2.28288 2.49019 2.85613 3.10883 3.25676 3.42495 3.64423 3.70020 3.78001 3.80966 3.99005 4.05072 4.09009 4.18205 4.34006 4.43081 4.47417 4.55558 4.64114 4.73238 4.80083 4.81440 4.89696 4.97330 4.99960 5.03762 5.10791 5.12070 5.13235 5.17250 5.32605 5.37722 5.51564 5.59085 5.70324 6.27385 6.40354 6.60110 7.11299 7.13905 7.82664 8.24510 9.16385 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.003558 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.702452 B = 7868.693272 C = 9359.892761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.052 0.948 5 C -0.044 4.044 6 N -0.929 5.929 7 Si 0.962 3.038 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.288 1.288 11 C 0.156 3.844 12 C 0.127 3.873 13 H 0.029 0.971 14 C -0.103 4.103 15 C -0.125 4.125 16 C 0.116 3.884 17 N -0.599 5.599 18 C 0.588 3.412 19 O -0.569 6.569 20 C -0.020 4.020 21 N -0.455 5.455 22 C -0.005 4.005 23 S 0.283 5.717 24 C -0.168 4.168 25 C -0.115 4.115 26 C -0.149 4.149 27 C -0.159 4.159 28 H 0.012 0.988 29 H 0.024 0.976 30 H 0.026 0.974 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.247 0.753 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.714 -25.144 2.122 28.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.392 4.392 4 H 0.070 0.930 5 C -0.240 4.240 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.215 1.215 11 C 0.029 3.971 12 C 0.021 3.979 13 H 0.048 0.952 14 C -0.141 4.141 15 C -0.162 4.162 16 C -0.005 4.005 17 N -0.332 5.332 18 C 0.376 3.624 19 O -0.449 6.449 20 C -0.154 4.154 21 N -0.169 5.169 22 C -0.304 4.304 23 S 0.540 5.460 24 C -0.293 4.293 25 C -0.136 4.136 26 C -0.186 4.186 27 C -0.197 4.197 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.118 0.882 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.203 -25.211 1.876 28.520 hybrid contribution -0.486 2.621 -0.074 2.667 sum 12.717 -22.589 1.802 25.985 Atomic orbital electron populations 1.20625 0.81699 0.96248 0.97939 1.44088 1.02438 1.00873 1.85849 1.19368 0.95655 0.86155 1.37979 0.93002 1.25546 0.98469 1.00923 0.99021 1.70220 1.19021 1.26895 1.41476 0.85288 0.77746 0.80432 0.77477 1.20281 1.20920 1.21514 1.21017 0.94730 0.87434 0.93924 1.22202 0.91677 0.85120 0.98888 0.95231 1.22388 0.95251 0.98773 0.97720 1.22920 1.00261 0.96017 0.97041 1.22556 0.94804 0.89662 0.93496 1.48555 1.18158 1.14625 1.51814 1.17301 0.79885 0.86893 0.78359 1.90771 1.64263 1.41936 1.47926 1.19996 0.94863 0.93783 1.06780 1.67105 1.33374 0.98050 1.18403 1.29149 0.95742 1.02261 1.03252 1.82333 1.19159 0.95372 1.49129 1.25021 0.98485 1.02428 1.03375 1.20454 0.89090 0.99019 1.04997 1.23277 0.96009 1.01323 0.98015 1.23114 0.97127 1.01825 0.97620 0.96940 0.95734 0.95583 0.94051 0.95918 0.92704 0.92388 0.90678 0.91135 0.86824 0.90752 0.88285 0.73696 0.87642 0.86464 0.86634 0.88220 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 8.04 127.77 1.03 10.22 16 2 N -0.61 -33.29 2.78 -726.97 -2.02 -35.30 16 3 C -0.26 -15.80 9.68 84.04 0.81 -14.99 16 4 H 0.05 3.27 7.88 -2.91 -0.02 3.24 16 5 C -0.04 -2.62 5.03 84.87 0.43 -2.19 16 6 N -0.93 -56.12 10.63 21.65 0.23 -55.89 16 7 Si 0.96 48.12 29.58 68.60 2.03 50.15 16 8 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 9 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 11 C 0.16 7.52 5.13 86.38 0.44 7.96 16 12 C 0.13 5.52 3.06 45.34 0.14 5.66 16 13 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 14 C -0.10 -3.76 5.63 31.78 0.18 -3.58 16 15 C -0.12 -3.30 7.11 32.06 0.23 -3.07 16 16 C 0.12 3.24 5.83 86.93 0.51 3.75 16 17 N -0.60 -22.39 3.07 -791.62 -2.43 -24.82 16 18 C 0.59 23.11 7.56 86.62 0.65 23.77 16 19 O -0.57 -26.61 13.49 -4.13 -0.06 -26.67 16 20 C -0.02 -0.61 6.60 40.56 0.27 -0.34 16 21 N -0.45 -10.62 7.50 -193.02 -1.45 -12.07 16 22 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 23 S 0.28 3.66 21.72 -56.49 -1.23 2.43 16 24 C -0.17 -4.17 6.05 24.99 0.15 -4.02 16 25 C -0.11 -2.97 5.20 -11.54 -0.06 -3.03 16 26 C -0.15 -2.46 10.04 30.62 0.31 -2.16 16 27 C -0.16 -3.28 10.24 30.62 0.31 -2.97 16 28 H 0.01 0.66 7.45 -2.39 -0.02 0.64 16 29 H 0.02 1.35 6.90 -2.39 -0.02 1.33 16 30 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.02 1.21 6.89 -2.39 -0.02 1.19 16 33 H 0.05 2.40 7.73 -2.39 -0.02 2.38 16 34 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.07 2.67 7.31 -2.39 -0.02 2.65 16 36 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.10 2.53 6.41 -2.39 -0.02 2.51 16 40 H 0.25 0.98 8.06 -2.91 -0.02 0.95 16 41 H 0.11 3.60 6.52 -2.39 -0.02 3.58 16 42 H 0.12 1.36 7.24 -2.39 -0.02 1.34 16 43 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.02 371.13 3.07 -74.96 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.99 Total: 10.69 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.99 Total: 16.53 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.67 Total: -128.09 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.23 Total: 2.43 kcal Total: -78.02 3.07 -74.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570540624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.797 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds