Wall clock time and date at job start Tue Mar 31 2020 18:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00046 * 2 1 4 4 H 1.07999 * 119.99751 * 182.43362 * 3 2 1 5 5 C 1.38808 * 120.00174 * 2.42665 * 3 2 1 6 6 N 1.31618 * 119.99976 * 350.10637 * 5 3 2 7 7 Si 1.86801 * 120.00236 * 170.38274 * 5 3 2 8 8 H 1.48496 * 109.47066 * 59.99875 * 7 5 3 9 9 H 1.48500 * 109.47432 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47102 * 300.00002 * 7 5 3 11 11 C 1.46500 * 120.00109 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47412 * 269.87159 * 11 2 1 13 13 H 1.09000 * 109.87612 * 55.54084 * 12 11 2 14 14 C 1.54318 * 109.88205 * 294.53076 * 12 11 2 15 15 C 1.55156 * 102.94387 * 218.39106 * 14 12 11 16 16 C 1.54914 * 101.58183 * 35.49753 * 15 14 12 17 17 N 1.47017 * 109.88490 * 176.71809 * 12 11 2 18 18 C 1.34774 * 125.64987 * 298.33746 * 17 12 11 19 19 O 1.21634 * 120.00095 * 4.58265 * 18 17 12 20 20 C 1.47270 * 120.00307 * 184.58574 * 18 17 12 21 21 N 1.33566 * 123.13767 * 0.02562 * 20 18 17 22 22 C 1.28645 * 115.76593 * 180.02562 * 21 20 18 23 23 S 1.70778 * 110.55772 * 359.97438 * 22 21 20 24 24 C 1.35204 * 123.14171 * 179.73422 * 20 18 17 25 25 C 1.50692 * 125.58767 * 0.02562 * 24 20 18 26 26 C 1.53006 * 117.49940 * 188.62742 * 25 24 20 27 27 C 1.52999 * 117.50088 * 120.00129 * 25 24 20 28 28 H 1.08999 * 109.46752 * 60.07401 * 1 2 3 29 29 H 1.08992 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47010 * 300.07269 * 1 2 3 31 31 H 0.97003 * 120.00409 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46455 * 29.86786 * 11 2 1 33 33 H 1.08998 * 109.47404 * 149.86861 * 11 2 1 34 34 H 1.09010 * 110.72063 * 336.74977 * 14 12 11 35 35 H 1.09000 * 110.72493 * 100.02120 * 14 12 11 36 36 H 1.08997 * 111.00571 * 153.57452 * 15 14 12 37 37 H 1.09005 * 111.00391 * 277.42443 * 15 14 12 38 38 H 1.08995 * 110.36310 * 81.83359 * 16 15 14 39 39 H 1.08996 * 110.36442 * 204.15758 * 16 15 14 40 40 H 1.07991 * 124.72431 * 179.97438 * 22 21 20 41 41 H 1.09002 * 115.54974 * 334.32409 * 25 24 20 42 42 H 1.08999 * 117.49279 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.50194 * 145.01570 * 26 25 24 44 44 H 1.08999 * 117.49999 * 214.97575 * 27 25 24 45 45 H 1.08994 * 117.49795 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 -0.0397 5 6 1.4566 2.3875 0.0509 6 7 0.1488 2.3997 -0.0969 7 14 2.3809 3.9882 0.3214 8 1 3.3609 4.1855 -0.7767 9 1 1.4186 5.1191 0.3359 10 1 3.0979 3.9323 1.6207 11 6 2.1975 -1.2687 0.0006 12 6 2.4554 -1.7082 1.4432 13 1 1.5128 -1.7634 1.9879 14 6 3.4035 -0.7066 2.1355 15 6 4.3059 -1.6242 3.0020 16 6 4.4407 -2.8733 2.0957 17 7 3.1209 -3.0191 1.4553 18 6 2.6090 -4.1644 0.9628 19 8 1.5416 -4.1523 0.3798 20 6 3.3421 -5.4307 1.1305 21 7 4.5172 -5.5162 1.7595 22 6 5.0327 -6.6931 1.8238 23 16 4.0198 -7.8342 1.0567 24 6 2.8856 -6.6160 0.6670 25 6 1.5913 -6.8277 -0.0749 26 6 1.1562 -8.2707 -0.3389 27 6 1.6740 -7.4050 -1.4894 28 1 -0.3633 0.5127 -0.8907 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3356 3.2393 -0.0609 32 1 1.6073 -2.0291 -0.5109 33 1 3.1489 -1.1392 -0.5153 34 1 3.9978 -0.1658 1.3988 35 1 2.8420 -0.0143 2.7628 36 1 5.2775 -1.1628 3.1784 37 1 3.8178 -1.8756 3.9437 38 1 5.2124 -2.7140 1.3426 39 1 4.6707 -3.7540 2.6954 40 1 5.9748 -6.9270 2.2970 41 1 0.8096 -6.0947 0.1246 42 1 1.8065 -9.0667 0.0238 43 1 0.0882 -8.4871 -0.3131 44 1 0.9467 -7.0520 -2.2204 45 1 2.6647 -7.6320 -1.8831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570540626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:50 Heat of formation + Delta-G solvation = 82.491410 kcal Electronic energy + Delta-G solvation = -27299.534606 eV Core-core repulsion = 23639.410839 eV Total energy + Delta-G solvation = -3660.123767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.72004 -38.98023 -37.53804 -36.94396 -35.20850 -31.59500 -31.19738 -30.55034 -28.90661 -26.27109 -25.78349 -25.07856 -23.46364 -22.65241 -22.22279 -21.46061 -21.08729 -19.88814 -18.69907 -18.02584 -16.85636 -16.48636 -16.12479 -15.83156 -15.12211 -14.98261 -14.59852 -14.43036 -14.27744 -13.70079 -13.55713 -13.27875 -12.90506 -12.64717 -12.56379 -12.29253 -12.08648 -11.93909 -11.81743 -11.67597 -11.26839 -11.09233 -10.91939 -10.86175 -10.72077 -10.67304 -10.33820 -10.22159 -10.07360 -9.85285 -9.68723 -9.62326 -9.52069 -9.39279 -9.02610 -8.49714 -8.19911 -6.78771 -5.55040 -2.96315 0.31743 0.96910 1.39005 1.93830 3.29560 3.42850 3.44902 3.48753 3.49672 3.71682 3.96077 4.28131 4.56681 4.59046 4.75899 4.77449 4.98344 5.02136 5.25873 5.34305 5.35295 5.39844 5.51198 5.57548 5.66565 5.79055 5.80416 5.84145 5.94492 6.08797 6.11153 6.18284 6.24222 6.46139 6.53566 6.68848 6.75733 6.91997 6.97915 7.08926 7.23712 7.76561 7.79107 7.89078 8.04393 8.42828 8.48541 9.36176 10.00371 10.45006 11.44088 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.003177 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.339807 B = 8809.947683 C = 9968.121992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.606 5.606 3 C -0.240 4.240 4 H 0.073 0.927 5 C -0.006 4.006 6 N -0.916 5.916 7 Si 0.903 3.097 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.149 3.851 12 C 0.116 3.884 13 H 0.068 0.932 14 C -0.107 4.107 15 C -0.141 4.141 16 C 0.100 3.900 17 N -0.592 5.592 18 C 0.601 3.399 19 O -0.528 6.528 20 C 0.009 3.991 21 N -0.430 5.430 22 C -0.011 4.011 23 S 0.189 5.811 24 C -0.148 4.148 25 C -0.086 4.086 26 C -0.179 4.179 27 C -0.159 4.159 28 H 0.048 0.952 29 H -0.006 1.006 30 H 0.032 0.968 31 H 0.249 0.751 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.204 0.796 41 H 0.151 0.849 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -23.496 4.476 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.329 5.329 3 C -0.369 4.369 4 H 0.091 0.909 5 C -0.202 4.202 6 N -0.564 5.564 7 Si 0.733 3.267 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.020 3.980 12 C 0.011 3.989 13 H 0.086 0.914 14 C -0.145 4.145 15 C -0.179 4.179 16 C -0.024 4.024 17 N -0.324 5.324 18 C 0.386 3.614 19 O -0.406 6.406 20 C -0.125 4.125 21 N -0.144 5.144 22 C -0.310 4.310 23 S 0.445 5.555 24 C -0.272 4.272 25 C -0.107 4.107 26 C -0.216 4.216 27 C -0.196 4.196 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.220 0.780 41 H 0.168 0.832 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.144 -23.944 4.228 25.977 hybrid contribution 0.307 1.849 0.292 1.897 sum 9.451 -22.095 4.521 24.452 Atomic orbital electron populations 1.21024 0.81547 0.93198 1.01663 1.43995 1.02427 1.00344 1.86133 1.19249 0.90664 0.83597 1.43430 0.90896 1.24825 0.95665 0.97635 1.02076 1.70235 1.05701 1.24648 1.55825 0.86342 0.78569 0.83605 0.78144 1.21255 1.21742 1.21222 1.21044 0.96189 0.88586 0.92175 1.22739 0.95298 0.79558 1.01347 0.91388 1.22551 0.96959 0.96405 0.98567 1.22892 1.00633 0.96116 0.98309 1.22589 0.84478 0.99324 0.95959 1.48476 1.18761 1.07972 1.57231 1.16582 0.84314 0.81072 0.79421 1.90760 1.22048 1.85211 1.42569 1.20426 0.93332 0.95207 1.03509 1.67150 1.08782 1.23086 1.15373 1.28409 1.05568 0.91470 1.05579 1.82725 1.10906 1.12646 1.49175 1.24780 1.01808 0.96248 1.04358 1.20731 0.94257 0.98143 0.97520 1.23157 1.02441 0.92647 1.03383 1.23069 1.03138 1.02492 0.90950 0.93325 0.98769 0.94898 0.94023 0.92755 0.94112 0.90172 0.90139 0.90502 0.91448 0.92069 0.88294 0.77984 0.83187 0.88825 0.87609 0.87538 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.54 8.99 59.85 0.54 5.08 16 2 N -0.61 -15.90 2.86 -181.12 -0.52 -16.42 16 3 C -0.24 -6.61 8.64 -15.06 -0.13 -6.74 16 4 H 0.07 1.93 7.01 -52.49 -0.37 1.56 16 5 C -0.01 -0.17 5.42 -17.43 -0.09 -0.26 16 6 N -0.92 -27.18 9.51 55.49 0.53 -26.65 16 7 Si 0.90 22.12 29.56 -169.99 -5.03 17.09 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.15 3.38 5.13 -4.04 -0.02 3.36 16 12 C 0.12 2.29 3.15 -66.96 -0.21 2.08 16 13 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 14 C -0.11 -1.92 5.54 -24.90 -0.14 -2.06 16 15 C -0.14 -1.98 7.09 -24.58 -0.17 -2.15 16 16 C 0.10 1.44 6.21 -2.53 -0.02 1.42 16 17 N -0.59 -10.37 3.06 -164.34 -0.50 -10.88 16 18 C 0.60 10.74 7.64 -12.59 -0.10 10.64 16 19 O -0.53 -10.67 12.98 5.25 0.07 -10.60 16 20 C 0.01 0.13 6.62 -84.52 -0.56 -0.42 16 21 N -0.43 -5.33 7.26 -12.36 -0.09 -5.42 16 22 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 23 S 0.19 1.52 21.77 -107.50 -2.34 -0.82 16 24 C -0.15 -1.82 6.04 -35.39 -0.21 -2.03 16 25 C -0.09 -1.03 5.40 -91.77 -0.50 -1.53 16 26 C -0.18 -1.54 10.03 -26.72 -0.27 -1.80 16 27 C -0.16 -1.55 10.23 -26.73 -0.27 -1.82 16 28 H 0.05 1.40 6.90 -51.93 -0.36 1.04 16 29 H -0.01 -0.16 7.79 -51.93 -0.40 -0.56 16 30 H 0.03 0.93 7.20 -51.93 -0.37 0.55 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.05 1.29 6.38 -51.93 -0.33 0.96 16 33 H 0.04 0.93 7.96 -51.93 -0.41 0.51 16 34 H 0.08 1.53 6.62 -51.92 -0.34 1.19 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.34 5.74 -51.93 -0.30 1.04 16 40 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.15 2.19 6.17 -51.93 -0.32 1.87 16 42 H 0.09 0.68 7.28 -51.93 -0.38 0.30 16 43 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -32.40 367.21 -10.40 -42.81 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.53 Total: 1.06 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.53 Total: 4.29 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.58 Total: -59.37 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.34 Total: -0.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.40 -10.40 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570540626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.300 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds