Wall clock time and date at job start Tue Mar 31 2020 18:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00046 * 2 1 4 4 H 1.07999 * 119.99751 * 182.43362 * 3 2 1 5 5 C 1.38808 * 120.00174 * 2.42665 * 3 2 1 6 6 N 1.31618 * 119.99976 * 350.10637 * 5 3 2 7 7 Si 1.86801 * 120.00236 * 170.38274 * 5 3 2 8 8 H 1.48496 * 109.47066 * 59.99875 * 7 5 3 9 9 H 1.48500 * 109.47432 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47102 * 300.00002 * 7 5 3 11 11 C 1.46500 * 120.00109 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47412 * 269.87159 * 11 2 1 13 13 H 1.09000 * 109.87612 * 55.54084 * 12 11 2 14 14 C 1.54318 * 109.88205 * 294.53076 * 12 11 2 15 15 C 1.55156 * 102.94387 * 218.39106 * 14 12 11 16 16 C 1.54914 * 101.58183 * 35.49753 * 15 14 12 17 17 N 1.47017 * 109.88490 * 176.71809 * 12 11 2 18 18 C 1.34774 * 125.64987 * 298.33746 * 17 12 11 19 19 O 1.21634 * 120.00095 * 4.58265 * 18 17 12 20 20 C 1.47270 * 120.00307 * 184.58574 * 18 17 12 21 21 N 1.33566 * 123.13767 * 0.02562 * 20 18 17 22 22 C 1.28645 * 115.76593 * 180.02562 * 21 20 18 23 23 S 1.70778 * 110.55772 * 359.97438 * 22 21 20 24 24 C 1.35204 * 123.14171 * 179.73422 * 20 18 17 25 25 C 1.50692 * 125.58767 * 0.02562 * 24 20 18 26 26 C 1.53006 * 117.49940 * 188.62742 * 25 24 20 27 27 C 1.52999 * 117.50088 * 120.00129 * 25 24 20 28 28 H 1.08999 * 109.46752 * 60.07401 * 1 2 3 29 29 H 1.08992 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47010 * 300.07269 * 1 2 3 31 31 H 0.97003 * 120.00409 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46455 * 29.86786 * 11 2 1 33 33 H 1.08998 * 109.47404 * 149.86861 * 11 2 1 34 34 H 1.09010 * 110.72063 * 336.74977 * 14 12 11 35 35 H 1.09000 * 110.72493 * 100.02120 * 14 12 11 36 36 H 1.08997 * 111.00571 * 153.57452 * 15 14 12 37 37 H 1.09005 * 111.00391 * 277.42443 * 15 14 12 38 38 H 1.08995 * 110.36310 * 81.83359 * 16 15 14 39 39 H 1.08996 * 110.36442 * 204.15758 * 16 15 14 40 40 H 1.07991 * 124.72431 * 179.97438 * 22 21 20 41 41 H 1.09002 * 115.54974 * 334.32409 * 25 24 20 42 42 H 1.08999 * 117.49279 * 359.97438 * 26 25 24 43 43 H 1.08996 * 117.50194 * 145.01570 * 26 25 24 44 44 H 1.08999 * 117.49999 * 214.97575 * 27 25 24 45 45 H 1.08994 * 117.49795 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2290 1.1863 -0.0397 5 6 1.4566 2.3875 0.0509 6 7 0.1488 2.3997 -0.0969 7 14 2.3809 3.9882 0.3214 8 1 3.3609 4.1855 -0.7767 9 1 1.4186 5.1191 0.3359 10 1 3.0979 3.9323 1.6207 11 6 2.1975 -1.2687 0.0006 12 6 2.4554 -1.7082 1.4432 13 1 1.5128 -1.7634 1.9879 14 6 3.4035 -0.7066 2.1355 15 6 4.3059 -1.6242 3.0020 16 6 4.4407 -2.8733 2.0957 17 7 3.1209 -3.0191 1.4553 18 6 2.6090 -4.1644 0.9628 19 8 1.5416 -4.1523 0.3798 20 6 3.3421 -5.4307 1.1305 21 7 4.5172 -5.5162 1.7595 22 6 5.0327 -6.6931 1.8238 23 16 4.0198 -7.8342 1.0567 24 6 2.8856 -6.6160 0.6670 25 6 1.5913 -6.8277 -0.0749 26 6 1.1562 -8.2707 -0.3389 27 6 1.6740 -7.4050 -1.4894 28 1 -0.3633 0.5127 -0.8907 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3356 3.2393 -0.0609 32 1 1.6073 -2.0291 -0.5109 33 1 3.1489 -1.1392 -0.5153 34 1 3.9978 -0.1658 1.3988 35 1 2.8420 -0.0143 2.7628 36 1 5.2775 -1.1628 3.1784 37 1 3.8178 -1.8756 3.9437 38 1 5.2124 -2.7140 1.3426 39 1 4.6707 -3.7540 2.6954 40 1 5.9748 -6.9270 2.2970 41 1 0.8096 -6.0947 0.1246 42 1 1.8065 -9.0667 0.0238 43 1 0.0882 -8.4871 -0.3131 44 1 0.9467 -7.0520 -2.2204 45 1 2.6647 -7.6320 -1.8831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570540626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:49 Heat of formation + Delta-G solvation = 63.503418 kcal Electronic energy + Delta-G solvation = -27300.357987 eV Core-core repulsion = 23639.410839 eV Total energy + Delta-G solvation = -3660.947148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81724 -40.19369 -38.62231 -38.10793 -37.15333 -33.52266 -32.62027 -31.46208 -30.60373 -28.06293 -27.14809 -26.77921 -24.72436 -23.41516 -23.10689 -22.94031 -22.56401 -21.36485 -19.83481 -19.08411 -18.85933 -17.61174 -17.38430 -17.04979 -16.62506 -16.21804 -15.92715 -15.48758 -15.41244 -15.09114 -15.04816 -14.89240 -14.51211 -14.25111 -13.96668 -13.63132 -13.48211 -13.11996 -12.99727 -12.82123 -12.79280 -12.62019 -12.53918 -12.30329 -12.12483 -12.08194 -12.05658 -11.91230 -11.65968 -11.51280 -11.48932 -10.84756 -10.63644 -10.52332 -10.23142 -9.97148 -9.62515 -8.90706 -7.72734 -5.17453 -0.51144 0.22504 0.62743 0.97338 1.47580 1.50826 1.57127 2.00824 2.26941 2.53790 2.88769 3.10205 3.35314 3.42140 3.63537 3.71303 3.80078 3.84895 4.00912 4.06242 4.09286 4.18019 4.32802 4.47229 4.48985 4.56703 4.65588 4.70596 4.76167 4.84998 4.90535 4.94800 5.04857 5.09022 5.11326 5.13332 5.18012 5.21587 5.39295 5.47694 5.50831 5.61982 5.77752 6.27880 6.39053 6.58726 7.10573 7.16244 7.86400 8.29858 9.26556 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.003177 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.339807 B = 8809.947683 C = 9968.121992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.619 5.619 3 C -0.244 4.244 4 H 0.084 0.916 5 C -0.064 4.064 6 N -0.950 5.950 7 Si 0.973 3.027 8 H -0.277 1.277 9 H -0.298 1.298 10 H -0.273 1.273 11 C 0.157 3.843 12 C 0.126 3.874 13 H 0.039 0.961 14 C -0.103 4.103 15 C -0.125 4.125 16 C 0.103 3.897 17 N -0.598 5.598 18 C 0.590 3.410 19 O -0.568 6.568 20 C -0.022 4.022 21 N -0.456 5.456 22 C -0.005 4.005 23 S 0.281 5.719 24 C -0.167 4.167 25 C -0.119 4.119 26 C -0.151 4.151 27 C -0.159 4.159 28 H 0.023 0.977 29 H 0.004 0.996 30 H 0.012 0.988 31 H 0.244 0.756 32 H 0.035 0.965 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.246 0.754 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.102 0.898 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.959 -26.117 5.670 29.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.343 5.343 3 C -0.373 4.373 4 H 0.101 0.899 5 C -0.256 4.256 6 N -0.599 5.599 7 Si 0.801 3.199 8 H -0.203 1.203 9 H -0.225 1.225 10 H -0.199 1.199 11 C 0.030 3.970 12 C 0.020 3.980 13 H 0.058 0.942 14 C -0.142 4.142 15 C -0.163 4.163 16 C -0.018 4.018 17 N -0.329 5.329 18 C 0.378 3.622 19 O -0.448 6.448 20 C -0.155 4.155 21 N -0.170 5.170 22 C -0.304 4.304 23 S 0.539 5.461 24 C -0.292 4.292 25 C -0.139 4.139 26 C -0.188 4.188 27 C -0.197 4.197 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.262 0.738 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.120 0.880 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.683 -26.616 5.438 29.980 hybrid contribution -0.775 2.450 -0.141 2.573 sum 11.909 -24.166 5.297 27.456 Atomic orbital electron populations 1.20649 0.82346 0.92969 0.99372 1.44171 1.02240 1.01425 1.86504 1.19589 0.91213 0.84011 1.42531 0.89865 1.25668 0.96563 1.01031 1.02379 1.70439 1.07267 1.24993 1.57212 0.85243 0.77193 0.78928 0.78553 1.20331 1.22468 1.19859 1.20992 0.95174 0.86731 0.94130 1.22233 0.95258 0.81871 0.98596 0.94247 1.22412 0.96928 0.96164 0.98654 1.22882 1.01139 0.94659 0.97619 1.22745 0.82794 1.00207 0.96097 1.48530 1.19750 1.06946 1.57713 1.17273 0.84200 0.82324 0.78453 1.90733 1.23840 1.86084 1.44122 1.19988 0.94887 0.94027 1.06616 1.67056 1.08263 1.25174 1.16539 1.29154 1.06536 0.90658 1.04065 1.82362 1.07684 1.09265 1.46817 1.25041 1.02763 0.97621 1.03727 1.20574 0.94066 0.99679 0.99595 1.23273 1.03492 0.90967 1.01065 1.23152 1.03818 1.02411 0.90296 0.95844 0.97766 0.96976 0.94662 0.94638 0.94147 0.91192 0.91753 0.87453 0.90575 0.91625 0.86604 0.73759 0.87064 0.86622 0.86664 0.87958 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.86 8.99 127.77 1.15 12.01 16 2 N -0.62 -33.97 2.86 -726.95 -2.08 -36.05 16 3 C -0.24 -13.73 8.64 84.03 0.73 -13.01 16 4 H 0.08 4.42 7.01 -2.91 -0.02 4.40 16 5 C -0.06 -3.68 5.42 84.86 0.46 -3.22 16 6 N -0.95 -58.36 9.51 21.65 0.21 -58.16 16 7 Si 0.97 45.99 29.56 68.60 2.03 48.02 16 8 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 C 0.16 7.51 5.13 86.38 0.44 7.96 16 12 C 0.13 5.22 3.15 45.34 0.14 5.37 16 13 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 14 C -0.10 -3.74 5.54 31.78 0.18 -3.56 16 15 C -0.13 -3.26 7.09 31.99 0.23 -3.03 16 16 C 0.10 2.85 6.21 86.86 0.54 3.39 16 17 N -0.60 -21.44 3.06 -792.08 -2.43 -23.87 16 18 C 0.59 22.03 7.64 86.62 0.66 22.70 16 19 O -0.57 -24.80 12.98 -4.14 -0.05 -24.85 16 20 C -0.02 -0.62 6.62 40.56 0.27 -0.35 16 21 N -0.46 -10.28 7.26 -193.02 -1.40 -11.68 16 22 C -0.01 -0.07 12.17 130.71 1.59 1.52 16 23 S 0.28 3.43 21.77 -56.49 -1.23 2.20 16 24 C -0.17 -3.93 6.04 24.98 0.15 -3.77 16 25 C -0.12 -2.88 5.40 -11.54 -0.06 -2.94 16 26 C -0.15 -2.32 10.03 30.60 0.31 -2.01 16 27 C -0.16 -3.00 10.23 30.60 0.31 -2.68 16 28 H 0.02 1.42 6.90 -2.39 -0.02 1.41 16 29 H 0.00 0.20 7.79 -2.39 -0.02 0.18 16 30 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 31 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.04 1.81 6.38 -2.38 -0.02 1.79 16 33 H 0.04 1.90 7.96 -2.39 -0.02 1.88 16 34 H 0.07 2.66 6.62 -2.38 -0.02 2.65 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.12 2.87 5.74 -2.39 -0.01 2.86 16 40 H 0.25 0.86 8.06 -2.92 -0.02 0.84 16 41 H 0.11 3.58 6.17 -2.39 -0.01 3.56 16 42 H 0.12 1.25 7.28 -2.39 -0.02 1.23 16 43 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 44 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.67 367.21 3.14 -72.53 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.00 Total: 13.51 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 7.09 Total: 18.36 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.71 Total: -129.76 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.23 Total: 2.20 kcal Total: -75.67 3.14 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570540626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.033 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds