Wall clock time and date at job start Tue Mar 31 2020 18:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00097 * 2 1 4 4 C 1.52994 * 109.47085 * 269.99960 * 3 2 1 5 5 H 1.09000 * 109.47494 * 305.00233 * 4 3 2 6 6 O 1.42901 * 109.47182 * 65.00010 * 4 3 2 7 7 C 1.53005 * 109.47171 * 184.99966 * 4 3 2 8 8 N 1.46500 * 109.47116 * 179.97438 * 7 4 3 9 9 C 1.36938 * 119.99919 * 180.02562 * 8 7 4 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99519 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00372 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99522 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47142 * 119.99940 * 13 11 9 16 16 H 1.48501 * 109.47233 * 239.99782 * 13 11 9 17 17 C 1.34776 * 119.99518 * 179.97438 * 2 1 3 18 18 O 1.21697 * 119.99763 * 175.51724 * 17 2 1 19 19 C 1.46720 * 120.00640 * 355.79451 * 17 2 1 20 20 C 1.36672 * 126.02655 * 172.50780 * 19 17 2 21 21 C 1.40806 * 107.05297 * 180.02562 * 20 19 17 22 22 C 1.48497 * 126.28401 * 179.97438 * 21 20 19 23 23 N 1.34039 * 126.67620 * 359.69428 * 22 21 20 24 24 N 1.28978 * 107.27551 * 179.86799 * 23 22 21 25 25 N 1.28735 * 108.93959 * 0.39668 * 24 23 22 26 26 H 0.97001 * 125.34361 * 179.76928 * 25 24 23 27 27 N 1.28869 * 109.31334 * 359.74555 * 25 24 23 28 28 C 1.36565 * 107.43348 * 0.02562 * 21 20 19 29 29 N 1.34843 * 108.61061 * 359.72485 * 28 21 20 30 30 H 0.97008 * 125.52819 * 180.30023 * 29 28 21 31 31 H 1.09003 * 109.46886 * 265.93687 * 1 2 3 32 32 H 1.09002 * 109.47013 * 25.93838 * 1 2 3 33 33 H 1.09000 * 109.47460 * 145.93974 * 1 2 3 34 34 H 1.09000 * 109.47066 * 29.99976 * 3 2 1 35 35 H 1.09006 * 109.47093 * 150.00192 * 3 2 1 36 36 H 0.96700 * 114.00022 * 59.99946 * 6 4 3 37 37 H 1.08998 * 109.47161 * 299.99945 * 7 4 3 38 38 H 1.09002 * 109.46730 * 60.00278 * 7 4 3 39 39 H 0.97003 * 120.00266 * 0.02562 * 8 7 4 40 40 H 0.97005 * 119.99869 * 180.02562 * 12 11 9 41 41 H 1.07994 * 126.47153 * 359.96978 * 20 19 17 42 42 H 1.07996 * 125.69686 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 2.9642 0.9130 -1.9815 6 8 1.2061 1.9935 -2.0814 7 6 3.3239 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8255 9 6 4.3296 4.5008 -3.0773 10 1 4.7492 5.0651 -2.2576 11 6 4.5610 4.9014 -4.3861 12 7 4.0493 4.2139 -5.3850 13 14 5.5998 6.4154 -4.7295 14 1 6.0546 7.0055 -3.4449 15 1 6.7807 6.0312 -5.5439 16 1 4.7895 7.4135 -5.4728 17 6 2.1388 -1.1672 0.0005 18 8 3.3530 -1.1689 -0.0819 19 6 1.4082 -2.4362 0.0943 20 6 1.9466 -3.6854 -0.0381 21 6 0.8947 -4.6075 0.1225 22 6 1.0056 -6.0869 0.0591 23 7 2.1196 -6.7974 -0.1665 24 7 1.7908 -8.0442 -0.1394 25 7 0.5264 -8.1382 0.0837 26 1 0.0282 -8.9679 0.1484 27 7 0.0266 -6.9569 0.2082 28 6 -0.2465 -3.8915 0.3461 29 7 0.0603 -2.5784 0.3356 30 1 -0.5673 -1.8518 0.4737 31 1 -0.3633 -0.0728 1.0251 32 1 -0.3633 0.9242 -0.4495 33 1 -0.3634 -0.8513 -0.5755 34 1 1.6085 2.0283 0.5138 35 1 3.1500 1.1383 0.5138 36 1 0.6956 2.6949 -1.6542 37 1 2.8122 3.7653 -0.9053 38 1 4.2747 2.7520 -0.9570 39 1 3.1915 2.8839 -3.5618 40 1 4.2113 4.4937 -6.2996 41 1 2.9829 -3.9207 -0.2304 42 1 -1.2297 -4.3075 0.5094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591045284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:51 Heat of formation + Delta-G solvation = 126.315751 kcal Electronic energy + Delta-G solvation = -27680.400193 eV Core-core repulsion = 23508.176328 eV Total energy + Delta-G solvation = -4172.223864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.62588 -41.97092 -39.55572 -37.45362 -35.56048 -34.59692 -34.00784 -33.78043 -31.56312 -31.20375 -30.25482 -29.04650 -27.18718 -25.70433 -24.91584 -24.30631 -23.10283 -21.77062 -21.20361 -20.66134 -20.47280 -19.21701 -17.91034 -17.33145 -17.14555 -16.70400 -16.43481 -16.08812 -15.39146 -15.17602 -14.85565 -14.49552 -14.37640 -14.14917 -13.82155 -13.65721 -13.49067 -13.32652 -12.95072 -12.85483 -12.59932 -12.42919 -12.31822 -12.09898 -11.63380 -11.56505 -11.34694 -11.31076 -10.92177 -10.81783 -10.71880 -10.28752 -10.10839 -9.82087 -9.68843 -9.20287 -8.87417 -8.72937 -8.50859 -6.88924 -5.71926 -3.01376 0.78572 1.17057 1.42229 2.01107 2.57082 2.73440 2.80610 3.22840 3.45825 3.50863 3.53618 3.61004 3.98279 4.27987 4.52039 4.59426 4.65167 4.74075 4.80069 4.98258 5.02655 5.08869 5.16290 5.26269 5.30896 5.54236 5.58825 5.64834 5.73176 5.76775 5.98902 6.12942 6.17190 6.23783 6.33328 6.44571 6.55722 6.75335 6.85707 7.13450 7.72019 7.97027 7.97062 8.00342 8.46154 9.57671 10.15759 10.51415 11.50493 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.001953 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.066348 B =14329.899882 C =14955.276873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.607 5.607 3 C 0.089 3.911 4 C 0.085 3.915 5 H 0.103 0.897 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.586 3.414 18 O -0.516 6.516 19 C -0.043 4.043 20 C -0.061 4.061 21 C -0.120 4.120 22 C 0.263 3.737 23 N -0.268 5.268 24 N -0.052 5.052 25 N -0.233 5.233 26 H 0.473 0.527 27 N -0.309 5.309 28 C 0.074 3.926 29 N -0.536 5.536 30 H 0.427 0.573 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.365 0.635 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.389 0.611 40 H 0.254 0.746 41 H 0.161 0.839 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 -21.169 17.124 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.340 5.340 3 C -0.034 4.034 4 C 0.025 3.975 5 H 0.121 0.879 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.374 3.626 18 O -0.390 6.390 19 C -0.154 4.154 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.017 4.017 23 N -0.141 5.141 24 N -0.047 5.047 25 N -0.078 5.078 26 H 0.327 0.673 27 N -0.161 5.161 28 C -0.068 4.068 29 N -0.140 5.140 30 H 0.275 0.725 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.212 0.788 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.223 0.777 40 H 0.064 0.936 41 H 0.178 0.822 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.598 -21.852 16.651 31.591 hybrid contribution -0.726 1.215 0.019 1.416 sum -16.324 -20.636 16.670 31.148 Atomic orbital electron populations 1.22175 0.80539 1.04847 1.00725 1.47577 1.06469 1.06076 1.73844 1.22289 0.98411 0.83893 0.98803 1.22580 0.85149 0.98354 0.91466 0.87882 1.86636 1.32383 1.58871 1.57563 1.21213 0.96414 0.92795 0.89795 1.42243 1.61723 1.32255 1.00771 1.19268 1.23623 1.02591 0.91837 0.91192 1.24770 1.01201 0.99431 0.95602 1.69695 1.49097 1.40758 0.98207 0.86111 0.79736 0.82540 0.77749 1.20575 1.21827 1.21900 1.17074 0.86784 0.81801 0.76946 1.90905 1.12547 1.86235 1.49355 1.20083 0.83169 0.95331 1.16832 1.21049 0.99679 0.88684 0.99377 1.16361 0.94548 0.85183 1.16913 1.22811 0.84821 0.94733 0.99333 1.76144 1.24521 0.95386 1.18058 1.78936 0.96601 1.14915 1.14271 1.47670 1.06283 1.08585 1.45293 0.67284 1.74879 1.26423 0.90957 1.23807 1.21936 0.99477 0.82772 1.02626 1.43055 1.08834 1.08041 1.54084 0.72533 0.92525 0.88780 0.90934 0.89900 0.88491 0.78843 0.96329 0.95412 0.77656 0.93556 0.82168 0.80025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 8.63 59.85 0.52 0.91 16 2 N -0.61 -6.70 2.84 -183.11 -0.52 -7.22 16 3 C 0.09 1.08 5.01 -4.05 -0.02 1.06 16 4 C 0.08 1.39 3.30 -26.73 -0.09 1.30 16 5 H 0.10 2.02 8.14 -51.93 -0.42 1.59 16 6 O -0.55 -8.72 11.98 -35.23 -0.42 -9.14 16 7 C 0.13 2.52 5.92 -4.04 -0.02 2.49 16 8 N -0.73 -18.94 5.49 -59.91 -0.33 -19.27 16 9 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 13 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 C 0.59 7.93 7.63 -12.83 -0.10 7.83 16 18 O -0.52 -9.06 16.50 5.19 0.09 -8.98 16 19 C -0.04 -0.47 6.60 -82.38 -0.54 -1.02 16 20 C -0.06 -0.72 10.57 -39.18 -0.41 -1.13 16 21 C -0.12 -1.20 6.10 -105.30 -0.64 -1.84 16 22 C 0.26 2.80 8.18 -156.30 -1.28 1.52 16 23 N -0.27 -3.23 12.53 32.16 0.40 -2.83 16 24 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 25 N -0.23 -1.50 7.90 60.35 0.48 -1.02 16 26 H 0.47 0.67 8.96 -340.37 -3.05 -2.38 16 27 N -0.31 -2.60 12.39 32.18 0.40 -2.20 16 28 C 0.07 0.51 11.84 -16.83 -0.20 0.31 16 29 N -0.54 -3.72 5.01 -9.55 -0.05 -3.77 16 30 H 0.43 1.73 4.88 -40.82 -0.20 1.53 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.18 16 32 H 0.09 0.58 7.19 -51.93 -0.37 0.21 16 33 H 0.07 0.43 5.30 -51.93 -0.28 0.15 16 34 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.10 1.29 7.49 -51.93 -0.39 0.90 16 36 H 0.37 4.43 9.04 45.56 0.41 4.84 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 11.00 7.54 -40.82 -0.31 10.69 16 40 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 42 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -39.50 364.12 -7.65 -47.15 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.66 Total: 8.12 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -3.04 Total: 3.85 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 1.92 Total: -64.30 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.34 Total: -18.12 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.50 -7.65 -47.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591045284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.463 kcal (2) G-P(sol) polarization free energy of solvation -39.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds