Wall clock time and date at job start Tue Mar 31 2020 18:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46496 * 120.00097 * 2 1 4 4 C 1.52994 * 109.47085 * 269.99960 * 3 2 1 5 5 H 1.09000 * 109.47494 * 305.00233 * 4 3 2 6 6 O 1.42901 * 109.47182 * 65.00010 * 4 3 2 7 7 C 1.53005 * 109.47171 * 184.99966 * 4 3 2 8 8 N 1.46500 * 109.47116 * 179.97438 * 7 4 3 9 9 C 1.36938 * 119.99919 * 180.02562 * 8 7 4 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99519 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00372 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99522 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47142 * 119.99940 * 13 11 9 16 16 H 1.48501 * 109.47233 * 239.99782 * 13 11 9 17 17 C 1.34776 * 119.99518 * 179.97438 * 2 1 3 18 18 O 1.21697 * 119.99763 * 175.51724 * 17 2 1 19 19 C 1.46720 * 120.00640 * 355.79451 * 17 2 1 20 20 C 1.36672 * 126.02655 * 172.50780 * 19 17 2 21 21 C 1.40806 * 107.05297 * 180.02562 * 20 19 17 22 22 C 1.48497 * 126.28401 * 179.97438 * 21 20 19 23 23 N 1.34039 * 126.67620 * 359.69428 * 22 21 20 24 24 N 1.28978 * 107.27551 * 179.86799 * 23 22 21 25 25 N 1.28735 * 108.93959 * 0.39668 * 24 23 22 26 26 H 0.97001 * 125.34361 * 179.76928 * 25 24 23 27 27 N 1.28869 * 109.31334 * 359.74555 * 25 24 23 28 28 C 1.36565 * 107.43348 * 0.02562 * 21 20 19 29 29 N 1.34843 * 108.61061 * 359.72485 * 28 21 20 30 30 H 0.97008 * 125.52819 * 180.30023 * 29 28 21 31 31 H 1.09003 * 109.46886 * 265.93687 * 1 2 3 32 32 H 1.09002 * 109.47013 * 25.93838 * 1 2 3 33 33 H 1.09000 * 109.47460 * 145.93974 * 1 2 3 34 34 H 1.09000 * 109.47066 * 29.99976 * 3 2 1 35 35 H 1.09006 * 109.47093 * 150.00192 * 3 2 1 36 36 H 0.96700 * 114.00022 * 59.99946 * 6 4 3 37 37 H 1.08998 * 109.47161 * 299.99945 * 7 4 3 38 38 H 1.09002 * 109.46730 * 60.00278 * 7 4 3 39 39 H 0.97003 * 120.00266 * 0.02562 * 8 7 4 40 40 H 0.97005 * 119.99869 * 180.02562 * 12 11 9 41 41 H 1.07994 * 126.47153 * 359.96978 * 20 19 17 42 42 H 1.07996 * 125.69686 * 180.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 1 2.9642 0.9130 -1.9815 6 8 1.2061 1.9935 -2.0814 7 6 3.3239 2.9680 -1.4443 8 7 3.5686 3.3905 -2.8255 9 6 4.3296 4.5008 -3.0773 10 1 4.7492 5.0651 -2.2576 11 6 4.5610 4.9014 -4.3861 12 7 4.0493 4.2139 -5.3850 13 14 5.5998 6.4154 -4.7295 14 1 6.0546 7.0055 -3.4449 15 1 6.7807 6.0312 -5.5439 16 1 4.7895 7.4135 -5.4728 17 6 2.1388 -1.1672 0.0005 18 8 3.3530 -1.1689 -0.0819 19 6 1.4082 -2.4362 0.0943 20 6 1.9466 -3.6854 -0.0381 21 6 0.8947 -4.6075 0.1225 22 6 1.0056 -6.0869 0.0591 23 7 2.1196 -6.7974 -0.1665 24 7 1.7908 -8.0442 -0.1394 25 7 0.5264 -8.1382 0.0837 26 1 0.0282 -8.9679 0.1484 27 7 0.0266 -6.9569 0.2082 28 6 -0.2465 -3.8915 0.3461 29 7 0.0603 -2.5784 0.3356 30 1 -0.5673 -1.8518 0.4737 31 1 -0.3633 -0.0728 1.0251 32 1 -0.3633 0.9242 -0.4495 33 1 -0.3634 -0.8513 -0.5755 34 1 1.6085 2.0283 0.5138 35 1 3.1500 1.1383 0.5138 36 1 0.6956 2.6949 -1.6542 37 1 2.8122 3.7653 -0.9053 38 1 4.2747 2.7520 -0.9570 39 1 3.1915 2.8839 -3.5618 40 1 4.2113 4.4937 -6.2996 41 1 2.9829 -3.9207 -0.2304 42 1 -1.2297 -4.3075 0.5094 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591045284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:50 Heat of formation + Delta-G solvation = 91.945420 kcal Electronic energy + Delta-G solvation = -27681.890602 eV Core-core repulsion = 23508.176328 eV Total energy + Delta-G solvation = -4173.714274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.32168 -42.71638 -40.54487 -38.76477 -36.63275 -35.85817 -35.30960 -34.50479 -33.25105 -32.12229 -31.41937 -30.09489 -28.11262 -27.09135 -25.60119 -25.30768 -24.60257 -22.96679 -22.47475 -21.37707 -21.25952 -19.90784 -19.24535 -18.72112 -18.02270 -17.84341 -17.34350 -17.07044 -16.55162 -16.46443 -16.17690 -15.66892 -15.61915 -14.99144 -14.90178 -14.85139 -14.61433 -14.38618 -14.19003 -13.94922 -13.69160 -13.57657 -13.19920 -13.01159 -12.95616 -12.79982 -12.59228 -12.35120 -12.16232 -12.04778 -12.04583 -12.00151 -11.82854 -11.40419 -11.07048 -10.99769 -10.00491 -9.66273 -9.25606 -9.01907 -7.95218 -5.25284 0.11754 0.38490 0.62352 1.46157 1.48314 1.53945 1.58214 1.75556 1.96961 2.10540 2.33225 2.55232 2.89271 3.26987 3.36103 3.47953 3.52177 3.75602 3.98764 4.07136 4.18139 4.19183 4.26412 4.32722 4.40709 4.50956 4.54863 4.58048 4.73688 4.77991 4.87887 4.94313 4.97779 5.20991 5.37225 5.42932 5.47329 5.64358 5.72788 6.24165 6.25635 6.35708 6.91392 7.01092 7.25775 7.31848 8.08338 8.30840 9.28515 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.001953 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.066348 B =14329.899882 C =14955.276873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.602 5.602 3 C 0.099 3.901 4 C 0.103 3.897 5 H 0.060 0.940 6 O -0.561 6.561 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.296 1.296 16 H -0.290 1.290 17 C 0.577 3.423 18 O -0.574 6.574 19 C -0.057 4.057 20 C -0.081 4.081 21 C -0.145 4.145 22 C 0.251 3.749 23 N -0.311 5.311 24 N -0.064 5.064 25 N -0.202 5.202 26 H 0.493 0.507 27 N -0.296 5.296 28 C 0.114 3.886 29 N -0.514 5.514 30 H 0.444 0.556 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.385 0.615 37 H 0.045 0.955 38 H 0.022 0.978 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.134 0.866 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.032 -20.845 19.133 34.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.333 5.333 3 C -0.024 4.024 4 C 0.042 3.958 5 H 0.079 0.921 6 O -0.367 6.367 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.273 4.273 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.187 1.187 15 H -0.223 1.223 16 H -0.217 1.217 17 C 0.367 3.633 18 O -0.453 6.453 19 C -0.168 4.168 20 C -0.109 4.109 21 C -0.155 4.155 22 C -0.029 4.029 23 N -0.183 5.183 24 N -0.059 5.059 25 N -0.053 5.053 26 H 0.352 0.648 27 N -0.149 5.149 28 C -0.030 4.030 29 N -0.119 5.119 30 H 0.295 0.705 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.152 0.848 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.867 -21.510 18.728 34.196 hybrid contribution 0.141 0.997 -0.546 1.145 sum -18.726 -20.513 18.182 33.197 Atomic orbital electron populations 1.22554 0.77370 1.05817 1.03557 1.47641 1.08400 1.04783 1.72475 1.22111 0.99157 0.85479 0.95679 1.22193 0.84641 0.95348 0.93634 0.92139 1.86601 1.31941 1.59819 1.58377 1.21445 0.97151 0.95056 0.86788 1.42472 1.61497 1.31650 1.02826 1.19729 1.22977 1.02928 0.92183 0.90272 1.25671 1.03159 1.02862 0.95561 1.69867 1.51140 1.42811 0.98347 0.85006 0.77603 0.78766 0.77953 1.18706 1.22322 1.21747 1.17490 0.86376 0.83165 0.76236 1.90865 1.15087 1.87149 1.52207 1.19593 0.84891 0.93736 1.18603 1.20989 0.99399 0.90096 1.00390 1.16479 0.95142 0.85083 1.18767 1.22965 0.84876 0.95271 0.99823 1.76127 1.26013 0.96327 1.19832 1.78870 0.97751 1.14271 1.15032 1.47751 1.05627 1.09135 1.42829 0.64783 1.74828 1.25590 0.91069 1.23439 1.22530 0.99967 0.81964 0.98560 1.42963 1.07324 1.08813 1.52834 0.70521 0.88545 0.87776 0.90204 0.85581 0.89978 0.76630 0.93739 0.95988 0.79468 0.94051 0.84779 0.75621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 8.63 127.77 1.10 1.56 16 2 N -0.60 -12.48 2.84 -851.44 -2.42 -14.90 16 3 C 0.10 2.29 5.01 86.38 0.43 2.72 16 4 C 0.10 3.36 3.30 30.59 0.10 3.46 16 5 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 6 O -0.56 -17.12 11.98 -148.98 -1.79 -18.91 16 7 C 0.12 4.86 5.92 86.38 0.51 5.37 16 8 N -0.74 -39.33 5.49 -343.44 -1.89 -41.21 16 9 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 10 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 11 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 12 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 13 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 17 C 0.58 16.01 7.63 86.46 0.66 16.67 16 18 O -0.57 -21.76 16.50 -4.34 -0.07 -21.83 16 19 C -0.06 -1.23 6.60 40.08 0.26 -0.97 16 20 C -0.08 -2.01 10.57 22.53 0.24 -1.77 16 21 C -0.14 -2.79 6.10 -20.30 -0.12 -2.91 16 22 C 0.25 5.19 8.18 137.39 1.12 6.32 16 23 N -0.31 -7.72 12.53 -52.16 -0.65 -8.37 16 24 N -0.06 -1.23 13.47 37.02 0.50 -0.74 16 25 N -0.20 -2.29 7.90 37.02 0.29 -1.99 16 26 H 0.49 0.34 8.96 -347.54 -3.12 -2.78 16 27 N -0.30 -4.41 12.39 -52.11 -0.65 -5.06 16 28 C 0.11 1.18 11.84 83.84 0.99 2.17 16 29 N -0.51 -5.62 5.01 -184.11 -0.92 -6.54 16 30 H 0.44 1.68 4.88 -92.70 -0.45 1.22 16 31 H 0.10 0.22 7.65 -2.39 -0.02 0.20 16 32 H 0.10 0.85 7.19 -2.39 -0.02 0.84 16 33 H 0.08 0.65 5.30 -2.39 -0.01 0.64 16 34 H 0.13 1.84 8.07 -2.39 -0.02 1.82 16 35 H 0.08 2.19 7.49 -2.38 -0.02 2.17 16 36 H 0.38 8.30 9.04 -74.06 -0.67 7.63 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.37 21.80 7.54 -92.71 -0.70 21.10 16 40 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 41 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -91.56 364.12 -2.47 -94.03 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -3.80 Total: 22.96 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.61 Total: 14.96 kcal Atomic # 7 Polarization: -135.10 SS G_CDS: -5.45 Total: -140.55 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.86 Total: -40.74 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -91.56 -2.47 -94.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591045284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.980 kcal (2) G-P(sol) polarization free energy of solvation -91.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds