Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99829 * 2 1 4 4 C 1.50703 * 109.47245 * 293.95537 * 3 2 1 5 5 H 1.08004 * 119.99946 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99607 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47293 * 89.99177 * 8 6 4 10 10 H 1.48496 * 109.46930 * 209.99735 * 8 6 4 11 11 H 1.48498 * 109.46752 * 329.99524 * 8 6 4 12 12 C 1.46900 * 111.00052 * 123.95071 * 2 1 3 13 13 C 1.53003 * 109.47106 * 164.01303 * 12 2 1 14 14 H 1.09005 * 109.47037 * 58.50909 * 13 12 2 15 15 O 1.42904 * 109.46965 * 298.51223 * 13 12 2 16 16 C 1.52997 * 109.47096 * 178.50925 * 13 12 2 17 17 N 1.46498 * 109.47280 * 184.99893 * 16 13 12 18 18 C 1.34797 * 119.85591 * 269.98528 * 17 16 13 19 19 N 1.30431 * 121.76302 * 180.02562 * 18 17 16 20 20 C 1.34378 * 121.34516 * 359.97438 * 19 18 17 21 21 C 1.48259 * 120.23356 * 180.02562 * 20 19 18 22 22 N 1.34122 * 126.68626 * 180.02562 * 21 20 19 23 23 N 1.28986 * 107.25639 * 180.02562 * 22 21 20 24 24 N 1.28718 * 108.97078 * 359.97438 * 23 22 21 25 25 H 0.97002 * 125.33049 * 179.97438 * 24 23 22 26 26 N 1.28866 * 109.34075 * 359.73021 * 24 23 22 27 27 C 1.38369 * 119.53278 * 0.02562 * 20 19 18 28 28 C 1.34951 * 119.85118 * 89.99643 * 17 16 13 29 29 O 1.22013 * 120.66160 * 359.96599 * 28 17 16 30 30 H 1.09000 * 109.47310 * 301.53212 * 1 2 3 31 31 H 1.08996 * 109.46949 * 61.53462 * 1 2 3 32 32 H 1.08998 * 109.47000 * 181.53036 * 1 2 3 33 33 H 1.09000 * 109.47238 * 53.95039 * 3 2 1 34 34 H 1.08993 * 109.47437 * 173.95540 * 3 2 1 35 35 H 0.97003 * 119.99837 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46985 * 44.01407 * 12 2 1 37 37 H 1.08997 * 109.46982 * 284.01248 * 12 2 1 38 38 H 0.96698 * 113.99660 * 299.99367 * 15 13 12 39 39 H 1.09001 * 109.47168 * 65.00034 * 16 13 12 40 40 H 1.09004 * 109.47254 * 305.00386 * 16 13 12 41 41 H 1.08000 * 119.12044 * 359.97438 * 18 17 16 42 42 H 1.08000 * 120.81331 * 180.27411 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7127 4.0016 -0.6154 8 14 1.5837 4.1865 -3.1387 9 1 0.2715 4.8673 -2.9973 10 1 2.6264 5.1873 -3.4800 11 1 1.5004 3.1705 -4.2185 12 6 1.9955 -0.7659 1.1376 13 6 3.4729 -1.0838 0.8985 14 1 4.0283 -0.1547 0.7698 15 8 3.6035 -1.8838 -0.2785 16 6 4.0308 -1.8493 2.0999 17 7 5.4715 -2.0494 1.9253 18 6 5.9245 -3.1528 1.2972 19 7 7.1988 -3.3687 1.1219 20 6 8.1223 -2.4969 1.5609 21 6 9.5645 -2.7667 1.3478 22 7 10.5898 -1.9910 1.7299 23 7 11.6750 -2.5798 1.3562 24 7 11.3707 -3.6807 0.7628 25 1 12.0064 -4.3096 0.3869 26 7 10.0896 -3.8192 0.7509 27 6 7.7179 -1.3456 2.2133 28 6 6.3393 -1.1284 2.3942 29 8 5.9367 -0.1271 2.9633 30 1 -0.3634 0.5374 0.8759 31 1 -0.3633 0.4898 -0.9034 32 1 -0.3633 -1.0273 0.0274 33 1 1.5610 1.9274 0.8309 34 1 3.0796 1.3445 0.1082 35 1 2.9873 4.9177 -0.7774 36 1 1.4357 -1.6956 1.2399 37 1 1.8934 -0.1781 2.0498 38 1 3.1335 -2.7277 -0.2345 39 1 3.5360 -2.8176 2.1755 40 1 3.8511 -1.2775 3.0104 41 1 5.2132 -3.8779 0.9301 42 1 8.4423 -0.6287 2.5707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591062244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = 101.984933 kcal Electronic energy + Delta-G solvation = -28347.231730 eV Core-core repulsion = 24173.952802 eV Total energy + Delta-G solvation = -4173.278928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.81411 -41.95265 -38.25978 -37.76371 -36.04841 -35.21944 -34.56226 -33.28194 -32.48742 -31.14480 -30.42768 -27.52333 -27.09417 -25.39241 -25.32643 -24.27976 -23.68659 -22.49593 -21.84205 -20.18763 -19.68172 -18.57955 -17.66000 -17.51434 -17.21193 -16.58133 -16.43143 -15.70654 -15.34170 -15.12876 -14.64766 -14.62804 -14.55697 -14.28551 -13.87157 -13.61532 -13.42767 -13.25733 -12.76958 -12.61754 -12.25341 -11.97785 -11.88522 -11.65577 -11.50415 -11.49516 -11.24699 -11.05562 -10.89720 -10.66989 -10.54973 -10.41713 -10.35455 -10.22439 -9.77333 -9.70896 -9.15989 -8.59783 -8.40399 -7.27942 -5.98856 -4.00374 -0.00303 0.79126 1.40639 1.85234 2.08514 2.25609 2.97768 3.34182 3.40633 3.44965 3.46253 3.60590 4.13162 4.29137 4.36050 4.48437 4.59912 4.61023 4.76086 4.90647 5.11491 5.17868 5.24170 5.31640 5.36519 5.42549 5.50152 5.55462 5.92560 5.97891 6.01644 6.06202 6.24054 6.29160 6.42535 6.67987 7.25145 7.30346 7.45017 7.69294 7.76573 7.78900 7.86263 8.07154 8.17311 8.53555 9.06346 9.63468 11.12035 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.002664 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.074180 B =10506.849741 C =11543.667246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.029 3.971 13 C 0.099 3.901 14 H 0.114 0.886 15 O -0.536 6.536 16 C 0.054 3.946 17 N -0.510 5.510 18 C 0.398 3.602 19 N -0.526 5.526 20 C 0.247 3.753 21 C 0.217 3.783 22 N -0.251 5.251 23 N -0.048 5.048 24 N -0.226 5.226 25 H 0.478 0.522 26 N -0.253 5.253 27 C -0.228 4.228 28 C 0.519 3.481 29 O -0.516 6.516 30 H 0.011 0.989 31 H 0.074 0.926 32 H 0.043 0.957 33 H -0.010 1.010 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.363 0.637 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.209 0.791 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.389 -21.676 6.337 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.101 4.101 13 C 0.038 3.962 14 H 0.132 0.868 15 O -0.339 6.339 16 C -0.069 4.069 17 N -0.227 5.227 18 C 0.113 3.887 19 N -0.250 5.250 20 C 0.124 3.876 21 C -0.064 4.064 22 N -0.125 5.125 23 N -0.043 5.043 24 N -0.073 5.073 25 H 0.332 0.668 26 N -0.105 5.105 27 C -0.257 4.257 28 C 0.317 3.683 29 O -0.391 6.391 30 H 0.030 0.970 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.008 0.992 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.208 0.792 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.226 0.774 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.770 -21.021 5.818 24.784 hybrid contribution -1.024 0.720 0.170 1.263 sum 10.746 -20.301 5.988 23.738 Atomic orbital electron populations 1.22196 0.88565 0.98923 1.01136 1.62059 1.06704 1.18083 1.38645 1.19795 0.95501 0.81301 0.96722 1.21110 1.34905 0.96841 1.01654 0.91898 1.25000 0.95297 0.97426 0.96965 1.69961 1.38154 1.11436 1.34070 0.86508 0.77930 0.79241 0.83815 1.20783 1.21250 1.19763 1.22569 0.94388 0.98746 0.94384 1.22350 0.96443 0.94621 0.82787 0.86802 1.86782 1.75050 1.33466 1.38608 1.22984 0.77153 1.03617 1.03126 1.46767 1.10651 1.19463 1.45804 1.24789 0.92235 0.86633 0.85001 1.68210 0.99175 1.31401 1.26169 1.17870 0.86616 0.90411 0.92667 1.22987 0.94775 0.89043 0.99609 1.76173 0.93990 1.23616 1.18722 1.78969 1.21003 0.95634 1.08650 1.47873 1.05208 1.17063 1.37138 0.66773 1.75173 0.92028 1.23431 1.19892 1.23246 0.95719 1.00122 1.06614 1.16975 0.86716 0.83632 0.80981 1.91051 1.79339 1.26158 1.42590 0.97000 0.90686 0.93797 0.99205 0.95124 0.92895 0.91632 0.94504 0.79157 0.88046 0.86835 0.77428 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.32 60.07 0.56 1.30 16 2 N -0.53 -10.91 4.60 -244.37 -1.12 -12.04 16 3 C 0.19 5.01 4.57 -4.97 -0.02 4.99 16 4 C -0.51 -14.43 8.54 -34.44 -0.29 -14.73 16 5 H 0.06 1.77 7.10 -52.48 -0.37 1.40 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.45 4.63 -3.82 -0.02 0.43 16 13 C 0.10 1.42 3.23 -26.73 -0.09 1.34 16 14 H 0.11 2.26 6.56 -51.93 -0.34 1.92 16 15 O -0.54 -7.35 12.68 -35.23 -0.45 -7.80 16 16 C 0.05 0.54 5.04 -4.04 -0.02 0.52 16 17 N -0.51 -5.79 2.55 -121.26 -0.31 -6.10 16 18 C 0.40 3.59 10.93 -90.66 -0.99 2.60 16 19 N -0.53 -5.93 10.35 -10.79 -0.11 -6.04 16 20 C 0.25 3.10 6.78 -82.58 -0.56 2.54 16 21 C 0.22 2.64 8.05 -156.25 -1.26 1.38 16 22 N -0.25 -3.09 12.26 32.13 0.39 -2.70 16 23 N -0.05 -0.47 13.47 60.35 0.81 0.34 16 24 N -0.23 -1.61 7.90 60.35 0.48 -1.14 16 25 H 0.48 0.92 8.96 -340.36 -3.05 -2.13 16 26 N -0.25 -2.60 12.40 32.15 0.40 -2.20 16 27 C -0.23 -3.09 9.76 -38.60 -0.38 -3.47 16 28 C 0.52 7.75 7.44 -15.24 -0.11 7.64 16 29 O -0.52 -9.70 16.76 4.91 0.08 -9.61 16 30 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 31 H 0.07 1.50 6.90 -51.93 -0.36 1.14 16 32 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 33 H -0.01 -0.28 8.11 -51.93 -0.42 -0.70 16 34 H 0.03 0.87 6.38 -51.93 -0.33 0.54 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 37 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 38 H 0.36 3.00 9.05 45.56 0.41 3.41 16 39 H 0.10 0.52 8.00 -51.93 -0.42 0.10 16 40 H 0.11 1.27 7.44 -51.93 -0.39 0.88 16 41 H 0.21 0.86 8.01 -52.49 -0.42 0.44 16 42 H 0.17 2.21 7.92 -52.49 -0.42 1.79 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -39.19 365.62 -8.78 -47.97 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.90 Total: -2.64 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -3.28 Total: 6.03 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 1.27 Total: -56.55 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.36 Total: -17.41 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.19 -8.78 -47.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591062244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.958 kcal (2) G-P(sol) polarization free energy of solvation -39.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds