Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99829 * 2 1 4 4 C 1.50703 * 109.47245 * 293.95537 * 3 2 1 5 5 H 1.08004 * 119.99946 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99607 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47293 * 89.99177 * 8 6 4 10 10 H 1.48496 * 109.46930 * 209.99735 * 8 6 4 11 11 H 1.48498 * 109.46752 * 329.99524 * 8 6 4 12 12 C 1.46900 * 111.00052 * 123.95071 * 2 1 3 13 13 C 1.53003 * 109.47106 * 164.01303 * 12 2 1 14 14 H 1.09005 * 109.47037 * 58.50909 * 13 12 2 15 15 O 1.42904 * 109.46965 * 298.51223 * 13 12 2 16 16 C 1.52997 * 109.47096 * 178.50925 * 13 12 2 17 17 N 1.46498 * 109.47280 * 184.99893 * 16 13 12 18 18 C 1.34797 * 119.85591 * 269.98528 * 17 16 13 19 19 N 1.30431 * 121.76302 * 180.02562 * 18 17 16 20 20 C 1.34378 * 121.34516 * 359.97438 * 19 18 17 21 21 C 1.48259 * 120.23356 * 180.02562 * 20 19 18 22 22 N 1.34122 * 126.68626 * 180.02562 * 21 20 19 23 23 N 1.28986 * 107.25639 * 180.02562 * 22 21 20 24 24 N 1.28718 * 108.97078 * 359.97438 * 23 22 21 25 25 H 0.97002 * 125.33049 * 179.97438 * 24 23 22 26 26 N 1.28866 * 109.34075 * 359.73021 * 24 23 22 27 27 C 1.38369 * 119.53278 * 0.02562 * 20 19 18 28 28 C 1.34951 * 119.85118 * 89.99643 * 17 16 13 29 29 O 1.22013 * 120.66160 * 359.96599 * 28 17 16 30 30 H 1.09000 * 109.47310 * 301.53212 * 1 2 3 31 31 H 1.08996 * 109.46949 * 61.53462 * 1 2 3 32 32 H 1.08998 * 109.47000 * 181.53036 * 1 2 3 33 33 H 1.09000 * 109.47238 * 53.95039 * 3 2 1 34 34 H 1.08993 * 109.47437 * 173.95540 * 3 2 1 35 35 H 0.97003 * 119.99837 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.46985 * 44.01407 * 12 2 1 37 37 H 1.08997 * 109.46982 * 284.01248 * 12 2 1 38 38 H 0.96698 * 113.99660 * 299.99367 * 15 13 12 39 39 H 1.09001 * 109.47168 * 65.00034 * 16 13 12 40 40 H 1.09004 * 109.47254 * 305.00386 * 16 13 12 41 41 H 1.08000 * 119.12044 * 359.97438 * 18 17 16 42 42 H 1.08000 * 120.81331 * 180.27411 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7127 4.0016 -0.6154 8 14 1.5837 4.1865 -3.1387 9 1 0.2715 4.8673 -2.9973 10 1 2.6264 5.1873 -3.4800 11 1 1.5004 3.1705 -4.2185 12 6 1.9955 -0.7659 1.1376 13 6 3.4729 -1.0838 0.8985 14 1 4.0283 -0.1547 0.7698 15 8 3.6035 -1.8838 -0.2785 16 6 4.0308 -1.8493 2.0999 17 7 5.4715 -2.0494 1.9253 18 6 5.9245 -3.1528 1.2972 19 7 7.1988 -3.3687 1.1219 20 6 8.1223 -2.4969 1.5609 21 6 9.5645 -2.7667 1.3478 22 7 10.5898 -1.9910 1.7299 23 7 11.6750 -2.5798 1.3562 24 7 11.3707 -3.6807 0.7628 25 1 12.0064 -4.3096 0.3869 26 7 10.0896 -3.8192 0.7509 27 6 7.7179 -1.3456 2.2133 28 6 6.3393 -1.1284 2.3942 29 8 5.9367 -0.1271 2.9633 30 1 -0.3634 0.5374 0.8759 31 1 -0.3633 0.4898 -0.9034 32 1 -0.3633 -1.0273 0.0274 33 1 1.5610 1.9274 0.8309 34 1 3.0796 1.3445 0.1082 35 1 2.9873 4.9177 -0.7774 36 1 1.4357 -1.6956 1.2399 37 1 1.8934 -0.1781 2.0498 38 1 3.1335 -2.7277 -0.2345 39 1 3.5360 -2.8176 2.1755 40 1 3.8511 -1.2775 3.0104 41 1 5.2132 -3.8779 0.9301 42 1 8.4423 -0.6287 2.5707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591062244.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = 67.375944 kcal Electronic energy + Delta-G solvation = -28348.732488 eV Core-core repulsion = 24173.952802 eV Total energy + Delta-G solvation = -4174.779686 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.62973 -42.93056 -39.46720 -38.89598 -37.41958 -36.30188 -35.41800 -34.62776 -34.13311 -32.12489 -31.57465 -29.43271 -28.32916 -26.55724 -26.18192 -25.39003 -25.13345 -23.67347 -22.93121 -21.77132 -20.46669 -19.50864 -18.79411 -18.50414 -18.32606 -18.12357 -17.56003 -17.01861 -16.57652 -16.39613 -16.11515 -15.89572 -15.63673 -15.37314 -15.16449 -15.04943 -14.63330 -14.32409 -14.23850 -13.96151 -13.43943 -13.21029 -13.14582 -12.84727 -12.82902 -12.60685 -12.56226 -12.48160 -12.35656 -12.31791 -12.24255 -11.66321 -11.57470 -11.38212 -11.30480 -11.20335 -10.68106 -10.62746 -9.66106 -8.97141 -8.21810 -6.32437 -0.94144 0.00281 0.51370 1.08393 1.21901 1.36860 1.37608 1.40289 1.51738 2.14355 2.38435 2.48675 2.75395 3.09921 3.16903 3.39180 3.48574 3.58128 3.69967 3.86180 3.93826 3.98237 4.20636 4.25318 4.28868 4.38921 4.53912 4.56316 4.60516 4.71341 4.81497 4.99331 5.10886 5.18901 5.21758 5.31720 5.44835 5.51579 5.62911 6.04995 6.32551 6.54470 6.62621 6.65438 6.85027 6.95793 7.12056 7.37558 8.89400 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.002664 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.074180 B =10506.849741 C =11543.667246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.209 3.791 4 C -0.520 4.520 5 H 0.066 0.934 6 C -0.005 4.005 7 N -0.939 5.939 8 Si 0.970 3.030 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.262 1.262 12 C 0.027 3.973 13 C 0.111 3.889 14 H 0.044 0.956 15 O -0.552 6.552 16 C 0.064 3.936 17 N -0.507 5.507 18 C 0.412 3.588 19 N -0.536 5.536 20 C 0.264 3.736 21 C 0.198 3.802 22 N -0.278 5.278 23 N -0.049 5.049 24 N -0.192 5.192 25 H 0.499 0.501 26 N -0.249 5.249 27 C -0.260 4.260 28 C 0.509 3.491 29 O -0.574 6.574 30 H 0.005 0.995 31 H 0.052 0.948 32 H 0.094 0.906 33 H -0.045 1.045 34 H -0.005 1.005 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.024 0.976 38 H 0.392 0.608 39 H 0.174 0.826 40 H 0.098 0.902 41 H 0.270 0.730 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -25.695 4.849 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.083 3.917 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.203 4.203 7 N -0.579 5.579 8 Si 0.795 3.205 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.186 1.186 12 C -0.102 4.102 13 C 0.050 3.950 14 H 0.062 0.938 15 O -0.359 6.359 16 C -0.058 4.058 17 N -0.221 5.221 18 C 0.130 3.870 19 N -0.259 5.259 20 C 0.140 3.860 21 C -0.083 4.083 22 N -0.152 5.152 23 N -0.044 5.044 24 N -0.044 5.044 25 H 0.359 0.641 26 N -0.103 5.103 27 C -0.289 4.289 28 C 0.310 3.690 29 O -0.455 6.455 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.112 0.888 33 H -0.028 1.028 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.042 0.958 38 H 0.242 0.758 39 H 0.192 0.808 40 H 0.117 0.883 41 H 0.286 0.714 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.609 -25.127 4.312 27.614 hybrid contribution -0.599 1.762 0.569 1.946 sum 10.010 -23.366 4.881 25.884 Atomic orbital electron populations 1.22241 0.87011 1.01689 0.99750 1.61930 1.08149 1.14598 1.41564 1.19352 0.93269 0.84469 0.94634 1.21494 1.34554 0.97340 1.02447 0.91621 1.26011 0.95079 0.98339 1.00849 1.70122 1.39527 1.11820 1.36466 0.85364 0.77962 0.78103 0.79109 1.19426 1.21103 1.18605 1.22771 0.95591 1.00018 0.91811 1.21877 0.95071 0.93179 0.84897 0.93828 1.86734 1.75794 1.35126 1.38296 1.23041 0.76392 1.06426 0.99970 1.46778 1.10914 1.19264 1.45153 1.26048 0.92514 0.86009 0.82447 1.68309 0.99926 1.31057 1.26589 1.17970 0.87398 0.89687 0.90931 1.22978 0.94732 0.89781 1.00801 1.76177 0.94577 1.24640 1.19758 1.78917 1.20310 0.96249 1.08920 1.47935 1.04824 1.16485 1.35183 0.64101 1.75114 0.93032 1.22717 1.19418 1.23048 0.95197 1.01332 1.09320 1.17210 0.87644 0.83526 0.80660 1.91007 1.80283 1.28618 1.45544 0.97601 0.92935 0.88786 1.02785 0.98729 0.92858 0.85766 0.95807 0.75800 0.80836 0.88343 0.71426 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.32 127.69 1.19 2.64 16 2 N -0.54 -21.98 4.60 -927.05 -4.27 -26.25 16 3 C 0.21 11.54 4.57 85.56 0.39 11.93 16 4 C -0.52 -30.53 8.54 25.60 0.22 -30.31 16 5 H 0.07 3.73 7.10 -2.91 -0.02 3.71 16 6 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 7 N -0.94 -59.97 13.29 21.45 0.28 -59.68 16 8 Si 0.97 46.10 29.54 68.60 2.03 48.12 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 C 0.03 0.79 4.63 86.30 0.40 1.19 16 13 C 0.11 3.12 3.23 30.59 0.10 3.22 16 14 H 0.04 1.88 6.56 -2.38 -0.02 1.86 16 15 O -0.55 -13.56 12.68 -148.98 -1.89 -15.45 16 16 C 0.06 1.13 5.04 86.38 0.44 1.57 16 17 N -0.51 -10.92 2.55 -655.55 -1.67 -12.60 16 18 C 0.41 6.04 10.93 180.36 1.97 8.01 16 19 N -0.54 -10.92 10.35 -188.06 -1.95 -12.87 16 20 C 0.26 6.64 6.78 41.45 0.28 6.92 16 21 C 0.20 4.76 8.05 137.27 1.10 5.86 16 22 N -0.28 -6.96 12.26 -52.25 -0.64 -7.60 16 23 N -0.05 -0.94 13.47 37.02 0.50 -0.44 16 24 N -0.19 -2.41 7.90 37.02 0.29 -2.12 16 25 H 0.50 0.73 8.96 -347.53 -3.12 -2.38 16 26 N -0.25 -4.74 12.40 -52.19 -0.65 -5.38 16 27 C -0.26 -7.58 9.76 22.91 0.22 -7.36 16 28 C 0.51 16.20 7.44 84.82 0.63 16.83 16 29 O -0.57 -23.79 16.76 -5.36 -0.09 -23.88 16 30 H 0.01 0.20 8.13 -2.39 -0.02 0.18 16 31 H 0.05 2.06 6.90 -2.39 -0.02 2.04 16 32 H 0.09 2.37 7.97 -2.39 -0.02 2.35 16 33 H -0.05 -2.75 8.11 -2.39 -0.02 -2.77 16 34 H -0.01 -0.33 6.38 -2.39 -0.02 -0.35 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.12 2.19 7.88 -2.39 -0.02 2.17 16 37 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 38 H 0.39 4.21 9.05 -74.06 -0.67 3.54 16 39 H 0.17 0.60 8.00 -2.39 -0.02 0.58 16 40 H 0.10 2.16 7.44 -2.38 -0.02 2.14 16 41 H 0.27 0.40 8.01 -2.91 -0.02 0.37 16 42 H 0.16 4.72 7.92 -2.91 -0.02 4.70 16 Total: -1.00 -95.55 365.62 -3.33 -98.88 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.68 Total: -1.36 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 7.41 Total: 20.63 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -8.10 Total: -126.94 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.98 Total: -39.33 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -95.55 -3.33 -98.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591062244.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.255 kcal (2) G-P(sol) polarization free energy of solvation -95.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds