Wall clock time and date at job start Tue Mar 31 2020 19:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 C 1.52997 * 109.46789 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.50995 * 60.08965 * 4 3 2 6 6 O 1.20825 * 120.00251 * 94.90752 * 5 4 3 7 7 O 1.34228 * 119.99724 * 274.91206 * 5 4 3 8 8 C 1.53105 * 109.53937 * 180.19600 * 4 3 2 9 9 N 1.47008 * 109.25949 * 63.10834 * 8 4 3 10 10 C 1.46901 * 111.00063 * 182.39429 * 9 8 4 11 11 C 1.50701 * 109.46990 * 302.40714 * 10 9 8 12 12 C 1.38635 * 119.74938 * 270.25654 * 11 10 9 13 13 C 1.37619 * 120.24352 * 180.25874 * 12 11 10 14 14 C 1.40711 * 119.74798 * 359.46791 * 13 12 11 15 15 C 1.41396 * 120.24787 * 180.29782 * 14 13 12 16 16 H 1.08005 * 119.99505 * 335.28837 * 15 14 13 17 17 C 1.39942 * 120.00083 * 155.28075 * 15 14 13 18 18 N 1.30817 * 120.00502 * 342.23482 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 162.22853 * 17 15 14 20 20 H 1.48505 * 109.46906 * 94.66663 * 19 17 15 21 21 H 1.48499 * 109.47220 * 214.66572 * 19 17 15 22 22 H 1.48500 * 109.47278 * 334.66810 * 19 17 15 23 23 C 1.40719 * 119.50966 * 0.27391 * 14 13 12 24 24 C 1.37612 * 119.74521 * 0.02562 * 23 14 13 25 25 C 1.47011 * 110.75488 * 58.61290 * 9 8 4 26 26 C 1.53102 * 109.25978 * 301.39015 * 25 9 8 27 27 O 1.43010 * 109.26071 * 56.84188 * 26 25 9 28 28 H 1.08997 * 109.47132 * 299.99805 * 1 2 3 29 29 H 1.08998 * 109.47287 * 60.00006 * 1 2 3 30 30 H 1.09004 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47142 * 59.99902 * 3 2 1 32 32 H 1.09002 * 109.47135 * 300.00216 * 3 2 1 33 33 H 0.96699 * 116.99769 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.50275 * 303.17216 * 8 4 3 35 35 H 1.09000 * 109.50374 * 183.04588 * 8 4 3 36 36 H 1.09003 * 109.46692 * 182.41020 * 10 9 8 37 37 H 1.08997 * 109.47290 * 62.41251 * 10 9 8 38 38 H 1.07995 * 119.87697 * 0.02562 * 12 11 10 39 39 H 1.07999 * 120.12174 * 179.73950 * 13 12 11 40 40 H 0.97001 * 120.00527 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.12678 * 180.02562 * 23 14 13 42 42 H 1.08006 * 119.87565 * 179.97438 * 24 23 14 43 43 H 1.09007 * 109.50558 * 61.31910 * 25 9 8 44 44 H 1.08995 * 109.51121 * 181.44802 * 25 9 8 45 45 H 1.09003 * 109.50479 * 176.78428 * 26 25 9 46 46 H 1.09000 * 109.50449 * 296.86723 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9807 0.4388 -1.2323 6 8 4.3157 1.0489 -2.2199 7 8 4.0050 -0.9033 -1.2321 8 6 4.1599 2.5823 0.0043 9 7 3.7848 3.2767 1.2446 10 6 4.3180 4.6453 1.2637 11 6 5.8167 4.6027 1.1116 12 6 6.6202 4.5146 2.2380 13 6 7.9901 4.4803 2.1112 14 6 8.5742 4.5238 0.8318 15 6 9.9804 4.4828 0.6890 16 1 10.6151 4.8128 1.4981 17 6 10.5496 4.0146 -0.5006 18 7 9.8338 3.3024 -1.3323 19 14 12.3315 4.4068 -0.9011 20 1 13.1976 3.2868 -0.4530 21 1 12.4803 4.5918 -2.3670 22 1 12.7333 5.6536 -0.2016 23 6 7.7486 4.6077 -0.3046 24 6 6.3813 4.6470 -0.1538 25 6 4.2343 2.5196 2.4218 26 6 3.6091 1.1223 2.3927 27 8 3.9587 0.4746 1.1665 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.2975 -1.3371 -2.0453 34 1 3.7950 3.1470 -0.8536 35 1 5.2451 2.4963 -0.0508 36 1 4.0622 5.1217 2.2102 37 1 3.8854 5.2153 0.4415 38 1 6.1695 4.4765 3.2186 39 1 8.6143 4.4159 2.9902 40 1 10.2282 2.9781 -2.1571 41 1 8.1863 4.6412 -1.2914 42 1 5.7456 4.7118 -1.0245 43 1 5.3208 2.4325 2.4055 44 1 3.9238 3.0385 3.3287 45 1 3.9844 0.5381 3.2329 46 1 2.5248 1.2073 2.4639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593984387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:53 Heat of formation + Delta-G solvation = -144.893993 kcal Electronic energy + Delta-G solvation = -30469.554029 eV Core-core repulsion = 26324.524469 eV Total energy + Delta-G solvation = -4145.029560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89664 -39.26595 -38.01992 -37.30311 -36.03919 -35.49945 -33.52644 -32.17244 -30.52717 -29.36610 -28.64445 -27.41906 -25.96563 -24.85370 -24.78023 -23.24696 -21.55940 -20.94337 -20.02331 -19.24730 -18.22200 -17.35130 -17.30580 -16.77507 -16.25795 -15.79785 -15.58642 -15.38236 -14.96455 -14.83014 -14.76702 -14.24766 -13.94923 -13.91283 -13.54927 -13.44324 -13.08314 -12.78642 -12.48322 -12.35942 -12.04676 -11.69379 -11.64307 -11.54411 -11.38248 -11.34780 -11.17572 -11.06151 -11.03647 -10.77547 -10.64849 -10.42580 -10.23180 -9.83790 -9.76719 -9.58268 -9.44996 -9.16547 -8.06331 -7.50717 -7.37374 -6.80648 -4.40391 2.19583 2.68080 2.97532 3.00283 3.04822 3.07946 3.14914 3.39431 3.82305 3.89587 4.27997 4.58348 4.68728 4.78196 5.07521 5.15200 5.17698 5.21906 5.25839 5.30787 5.41297 5.49613 5.62520 5.64256 5.68184 5.81627 5.89578 6.01388 6.16729 6.21060 6.27386 6.31107 6.38265 6.56895 6.88260 6.92206 7.00810 7.06206 7.10168 7.19610 7.26677 7.33697 7.55249 7.79146 8.00117 8.02773 8.04828 8.24482 8.58810 8.84287 8.91877 10.13458 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003522 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.907704 B = 7948.018582 C = 8934.068309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.045 3.955 4 C 0.141 3.859 5 C 0.508 3.492 6 O -0.503 6.503 7 O -0.490 6.490 8 C 0.041 3.959 9 N -0.530 5.530 10 C 0.116 3.884 11 C -0.260 4.260 12 C -0.076 4.076 13 C -0.230 4.230 14 C 0.115 3.885 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.165 4.165 24 C -0.087 4.087 25 C 0.007 3.993 26 C 0.063 3.937 27 O -0.350 6.350 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.282 0.718 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -4.834 2.426 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.032 4.032 4 C 0.100 3.900 5 C 0.349 3.651 6 O -0.391 6.391 7 O -0.299 6.299 8 C -0.087 4.087 9 N -0.253 5.253 10 C -0.010 4.010 11 C -0.262 4.262 12 C -0.095 4.095 13 C -0.249 4.249 14 C 0.112 3.888 15 C -0.491 4.491 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.185 4.185 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.014 4.014 27 O -0.268 6.268 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.262 0.738 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.479 -4.926 2.310 16.407 hybrid contribution 1.637 0.214 -0.812 1.840 sum -13.841 -4.711 1.498 14.697 Atomic orbital electron populations 1.22744 0.81203 1.02702 0.99891 1.88017 1.19384 1.26685 1.95441 1.23041 0.91449 0.85746 1.02975 1.21257 0.93130 0.91663 0.83998 1.22548 0.73040 0.81052 0.88481 1.90775 1.43993 1.69298 1.35035 1.84642 1.79466 1.21043 1.44787 1.22505 1.01219 0.90581 0.94411 1.62803 1.58002 1.03443 1.01093 1.20841 0.91166 0.87584 1.01398 1.19573 0.94197 1.18654 0.93781 1.20338 0.93761 0.99928 0.95488 1.20949 0.93623 1.13611 0.96749 1.17632 0.93343 0.86978 0.90826 1.19614 0.92022 1.37636 0.99805 0.90448 1.25930 1.00407 0.92483 0.95437 1.69823 1.38288 1.23520 1.09603 0.86327 0.82083 0.80039 0.78467 1.19527 1.19966 1.18404 1.21307 0.91926 1.05910 0.99327 1.20549 0.95152 1.00259 0.94671 1.22872 1.00686 0.94172 0.94356 1.22790 0.99408 0.92937 0.86276 1.88159 1.79174 1.46903 1.12595 0.94034 0.94255 0.89570 0.89646 0.91944 0.73789 0.88893 0.90312 0.91203 0.91240 0.89748 0.89169 0.90748 0.86577 0.89637 0.91811 0.89815 0.88029 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.94 10.14 -44.99 -0.46 -5.40 16 3 C 0.04 0.59 4.37 37.16 0.16 0.75 16 4 C 0.14 2.24 0.84 -91.72 -0.08 2.16 16 5 C 0.51 8.53 6.88 36.01 0.25 8.78 16 6 O -0.50 -9.52 16.93 -18.75 -0.32 -9.83 16 7 O -0.49 -7.05 13.08 -44.45 -0.58 -7.64 16 8 C 0.04 0.70 3.01 -3.71 -0.01 0.69 16 9 N -0.53 -8.05 4.30 -235.75 -1.01 -9.06 16 10 C 0.12 1.89 5.57 -4.97 -0.03 1.86 16 11 C -0.26 -5.28 4.05 -104.33 -0.42 -5.70 16 12 C -0.08 -1.62 7.97 -39.66 -0.32 -1.93 16 13 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 14 C 0.11 3.04 5.57 -106.82 -0.60 2.44 16 15 C -0.46 -12.23 9.05 -37.74 -0.34 -12.58 16 16 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 17 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 18 N -0.79 -20.60 10.97 55.55 0.61 -19.99 16 19 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 24 C -0.09 -1.98 7.89 -39.66 -0.31 -2.29 16 25 C 0.01 0.11 5.10 -3.71 -0.02 0.09 16 26 C 0.06 0.83 6.61 37.21 0.25 1.08 16 27 O -0.35 -5.77 9.97 -57.91 -0.58 -6.34 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.04 6.13 -51.93 -0.32 0.72 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 3.82 9.10 45.56 0.41 4.24 16 34 H 0.09 1.55 7.98 -51.93 -0.41 1.14 16 35 H 0.08 1.66 6.22 -51.93 -0.32 1.34 16 36 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 37 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.08 1.56 8.01 -52.49 -0.42 1.14 16 39 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.12 3.15 6.18 -52.48 -0.32 2.83 16 42 H 0.09 1.81 8.02 -52.48 -0.42 1.39 16 43 H 0.06 1.13 6.31 -51.93 -0.33 0.81 16 44 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 45 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 0.69 6.50 -51.93 -0.34 0.35 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -30.80 371.52 -8.75 -39.55 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.82 Total: 11.38 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.16 Total: -11.96 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: -0.41 Total: -29.05 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.93 Total: -29.21 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.80 -8.75 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593984387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.343 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds