Wall clock time and date at job start Tue Mar 31 2020 19:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 C 1.52997 * 109.46789 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.50995 * 60.08965 * 4 3 2 6 6 O 1.20825 * 120.00251 * 94.90752 * 5 4 3 7 7 O 1.34228 * 119.99724 * 274.91206 * 5 4 3 8 8 C 1.53105 * 109.53937 * 180.19600 * 4 3 2 9 9 N 1.47008 * 109.25949 * 63.10834 * 8 4 3 10 10 C 1.46901 * 111.00063 * 182.39429 * 9 8 4 11 11 C 1.50701 * 109.46990 * 302.40714 * 10 9 8 12 12 C 1.38635 * 119.74938 * 270.25654 * 11 10 9 13 13 C 1.37619 * 120.24352 * 180.25874 * 12 11 10 14 14 C 1.40711 * 119.74798 * 359.46791 * 13 12 11 15 15 C 1.41396 * 120.24787 * 180.29782 * 14 13 12 16 16 H 1.08005 * 119.99505 * 335.28837 * 15 14 13 17 17 C 1.39942 * 120.00083 * 155.28075 * 15 14 13 18 18 N 1.30817 * 120.00502 * 342.23482 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 162.22853 * 17 15 14 20 20 H 1.48505 * 109.46906 * 94.66663 * 19 17 15 21 21 H 1.48499 * 109.47220 * 214.66572 * 19 17 15 22 22 H 1.48500 * 109.47278 * 334.66810 * 19 17 15 23 23 C 1.40719 * 119.50966 * 0.27391 * 14 13 12 24 24 C 1.37612 * 119.74521 * 0.02562 * 23 14 13 25 25 C 1.47011 * 110.75488 * 58.61290 * 9 8 4 26 26 C 1.53102 * 109.25978 * 301.39015 * 25 9 8 27 27 O 1.43010 * 109.26071 * 56.84188 * 26 25 9 28 28 H 1.08997 * 109.47132 * 299.99805 * 1 2 3 29 29 H 1.08998 * 109.47287 * 60.00006 * 1 2 3 30 30 H 1.09004 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47142 * 59.99902 * 3 2 1 32 32 H 1.09002 * 109.47135 * 300.00216 * 3 2 1 33 33 H 0.96699 * 116.99769 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.50275 * 303.17216 * 8 4 3 35 35 H 1.09000 * 109.50374 * 183.04588 * 8 4 3 36 36 H 1.09003 * 109.46692 * 182.41020 * 10 9 8 37 37 H 1.08997 * 109.47290 * 62.41251 * 10 9 8 38 38 H 1.07995 * 119.87697 * 0.02562 * 12 11 10 39 39 H 1.07999 * 120.12174 * 179.73950 * 13 12 11 40 40 H 0.97001 * 120.00527 * 179.97438 * 18 17 15 41 41 H 1.08003 * 120.12678 * 180.02562 * 23 14 13 42 42 H 1.08006 * 119.87565 * 179.97438 * 24 23 14 43 43 H 1.09007 * 109.50558 * 61.31910 * 25 9 8 44 44 H 1.08995 * 109.51121 * 181.44802 * 25 9 8 45 45 H 1.09003 * 109.50479 * 176.78428 * 26 25 9 46 46 H 1.09000 * 109.50449 * 296.86723 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9807 0.4388 -1.2323 6 8 4.3157 1.0489 -2.2199 7 8 4.0050 -0.9033 -1.2321 8 6 4.1599 2.5823 0.0043 9 7 3.7848 3.2767 1.2446 10 6 4.3180 4.6453 1.2637 11 6 5.8167 4.6027 1.1116 12 6 6.6202 4.5146 2.2380 13 6 7.9901 4.4803 2.1112 14 6 8.5742 4.5238 0.8318 15 6 9.9804 4.4828 0.6890 16 1 10.6151 4.8128 1.4981 17 6 10.5496 4.0146 -0.5006 18 7 9.8338 3.3024 -1.3323 19 14 12.3315 4.4068 -0.9011 20 1 13.1976 3.2868 -0.4530 21 1 12.4803 4.5918 -2.3670 22 1 12.7333 5.6536 -0.2016 23 6 7.7486 4.6077 -0.3046 24 6 6.3813 4.6470 -0.1538 25 6 4.2343 2.5196 2.4218 26 6 3.6091 1.1223 2.3927 27 8 3.9587 0.4746 1.1665 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.2975 -1.3371 -2.0453 34 1 3.7950 3.1470 -0.8536 35 1 5.2451 2.4963 -0.0508 36 1 4.0622 5.1217 2.2102 37 1 3.8854 5.2153 0.4415 38 1 6.1695 4.4765 3.2186 39 1 8.6143 4.4159 2.9902 40 1 10.2282 2.9781 -2.1571 41 1 8.1863 4.6412 -1.2914 42 1 5.7456 4.7118 -1.0245 43 1 5.3208 2.4325 2.4055 44 1 3.9238 3.0385 3.3287 45 1 3.9844 0.5381 3.2329 46 1 2.5248 1.2073 2.4639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593984387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:52 Heat of formation + Delta-G solvation = -166.251071 kcal Electronic energy + Delta-G solvation = -30470.480142 eV Core-core repulsion = 26324.524469 eV Total energy + Delta-G solvation = -4145.955673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13733 -40.59308 -39.52081 -38.40883 -37.32027 -36.93312 -35.31005 -33.34211 -32.19488 -31.19550 -29.96373 -28.60287 -27.22541 -26.24760 -25.90604 -24.64397 -22.97792 -22.71204 -21.66750 -20.47901 -19.48187 -19.24864 -18.54733 -17.84529 -17.37476 -17.16489 -16.98361 -16.57646 -16.28089 -16.09517 -16.01135 -15.73667 -15.52119 -15.36082 -14.96986 -14.65416 -14.50963 -14.11295 -13.99689 -13.81374 -13.43510 -13.25697 -13.02411 -12.81164 -12.78049 -12.65487 -12.60932 -12.50476 -12.30584 -12.29321 -12.13195 -11.89884 -11.63805 -11.39979 -11.29717 -11.02802 -10.76347 -10.67137 -9.46309 -9.35919 -9.22285 -8.67838 -6.37791 0.89687 0.91749 1.11750 1.33024 1.43981 1.49685 1.82679 2.16187 2.34438 2.65427 2.77139 3.08166 3.52539 3.68778 3.73186 4.00872 4.04207 4.16022 4.23748 4.29960 4.35014 4.40407 4.45522 4.53680 4.55952 4.58573 4.66483 4.67768 4.75992 4.86632 4.89183 4.99209 5.04769 5.08234 5.11433 5.32090 5.40471 5.43001 5.65574 5.80484 5.87423 5.93465 5.99217 6.07142 6.13859 6.23434 6.36346 6.67762 6.87521 6.90629 7.00898 8.28534 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.003522 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.907704 B = 7948.018582 C = 8934.068309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.055 3.945 4 C 0.139 3.861 5 C 0.504 3.496 6 O -0.536 6.536 7 O -0.488 6.488 8 C 0.050 3.950 9 N -0.509 5.509 10 C 0.118 3.882 11 C -0.238 4.238 12 C -0.072 4.072 13 C -0.246 4.246 14 C 0.081 3.919 15 C -0.502 4.502 16 H 0.075 0.925 17 C 0.033 3.967 18 N -0.827 5.827 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.194 4.194 24 C -0.091 4.091 25 C 0.006 3.994 26 C 0.060 3.940 27 O -0.373 6.373 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.423 0.577 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.286 0.714 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.640 -4.841 4.062 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.022 4.022 4 C 0.098 3.902 5 C 0.346 3.654 6 O -0.426 6.426 7 O -0.300 6.300 8 C -0.079 4.079 9 N -0.231 5.231 10 C -0.009 4.009 11 C -0.240 4.240 12 C -0.090 4.090 13 C -0.266 4.266 14 C 0.079 3.921 15 C -0.532 4.532 16 H 0.093 0.907 17 C -0.181 4.181 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.180 1.180 23 C -0.213 4.213 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.016 4.016 27 O -0.292 6.292 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.284 0.716 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.134 0.866 45 H 0.138 0.862 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.014 -4.957 3.960 19.099 hybrid contribution 2.207 0.126 -1.246 2.538 sum -15.807 -4.831 2.714 16.750 Atomic orbital electron populations 1.22973 0.79046 1.04010 1.01083 1.87979 1.21690 1.26526 1.95647 1.22910 0.89149 0.86174 1.03932 1.21232 0.95107 0.90324 0.83583 1.22908 0.72293 0.81605 0.88587 1.90757 1.45570 1.69981 1.36329 1.84597 1.79045 1.20099 1.46228 1.22314 0.98274 0.91999 0.95357 1.62847 1.56750 1.02852 1.00694 1.20984 0.87646 0.88604 1.03643 1.20077 0.96961 1.14646 0.92350 1.20700 0.92657 0.98218 0.97464 1.21182 0.95322 1.14060 0.96028 1.17962 0.93922 0.88242 0.91992 1.19854 0.92544 1.39793 1.01009 0.90712 1.26793 1.04932 0.91627 0.94772 1.69903 1.40380 1.24774 1.10264 0.85218 0.76322 0.79900 0.78425 1.18654 1.19127 1.18024 1.21232 0.93422 1.08387 0.98307 1.20754 0.94114 0.99684 0.96438 1.22992 0.98652 0.95481 0.95037 1.23026 1.00804 0.92177 0.85575 1.88128 1.79803 1.47688 1.13613 0.92452 0.93405 0.88314 0.88144 0.91362 0.71565 0.88967 0.95163 0.88138 0.90037 0.86045 0.88780 0.90340 0.89078 0.88691 0.95344 0.86554 0.86154 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -9.46 10.14 -139.65 -1.42 -10.88 16 3 C 0.06 1.31 4.37 71.98 0.31 1.62 16 4 C 0.14 4.26 0.84 -11.50 -0.01 4.25 16 5 C 0.50 16.98 6.88 71.24 0.49 17.47 16 6 O -0.54 -20.81 16.93 21.97 0.37 -20.44 16 7 O -0.49 -13.86 13.08 -46.43 -0.61 -14.47 16 8 C 0.05 1.65 3.01 86.32 0.26 1.91 16 9 N -0.51 -13.99 4.30 -899.77 -3.87 -17.87 16 10 C 0.12 3.43 5.57 85.56 0.48 3.91 16 11 C -0.24 -9.42 4.05 -19.67 -0.08 -9.50 16 12 C -0.07 -2.95 7.97 22.22 0.18 -2.77 16 13 C -0.25 -12.09 9.80 22.73 0.22 -11.87 16 14 C 0.08 4.51 5.57 -21.29 -0.12 4.39 16 15 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 16 H 0.07 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.03 1.76 5.14 85.26 0.44 2.19 16 18 N -0.83 -45.80 10.97 21.82 0.24 -45.57 16 19 Si 0.98 39.79 29.59 68.60 2.03 41.83 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C -0.19 -10.59 8.70 22.73 0.20 -10.39 16 24 C -0.09 -4.23 7.89 22.22 0.18 -4.06 16 25 C 0.01 0.17 5.10 86.32 0.44 0.61 16 26 C 0.06 1.40 6.61 72.02 0.48 1.88 16 27 O -0.37 -11.76 9.97 -127.29 -1.27 -13.03 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.10 2.04 6.13 -2.39 -0.01 2.03 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.42 7.86 9.10 -74.06 -0.67 7.19 16 34 H 0.09 3.04 7.98 -2.39 -0.02 3.02 16 35 H 0.03 1.31 6.22 -2.39 -0.01 1.29 16 36 H 0.10 2.43 8.05 -2.39 -0.02 2.41 16 37 H 0.08 2.25 8.08 -2.39 -0.02 2.23 16 38 H 0.12 4.07 8.01 -2.91 -0.02 4.05 16 39 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 41 H 0.09 5.33 6.18 -2.91 -0.02 5.32 16 42 H 0.09 4.14 8.02 -2.91 -0.02 4.11 16 43 H 0.03 0.96 6.31 -2.38 -0.02 0.94 16 44 H 0.12 2.29 8.12 -2.39 -0.02 2.27 16 45 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.08 1.56 6.50 -2.39 -0.02 1.54 16 Total: -1.00 -71.55 371.52 0.73 -70.82 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.33 Total: 36.23 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 4.92 Total: -26.63 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -3.63 Total: -63.43 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -2.92 Total: -58.82 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.83 kcal Total: -71.55 0.73 -70.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593984387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.430 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds