Wall clock time and date at job start Tue Mar 31 2020 18:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35639 * 116.99536 * 2 1 4 4 C 1.38708 * 120.15651 * 0.02562 * 3 2 1 5 5 C 1.38048 * 120.08894 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.79993 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00195 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47353 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47600 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47646 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99463 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00445 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99998 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00395 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47009 * 59.99434 * 18 16 14 20 20 H 1.48498 * 109.47590 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46858 * 299.99875 * 18 16 14 22 22 C 1.38566 * 120.40415 * 0.26232 * 5 4 3 23 23 C 1.37766 * 120.30426 * 359.48131 * 22 5 4 24 24 C 1.39768 * 119.90484 * 0.51288 * 23 22 5 25 25 C 1.47399 * 120.19720 * 179.72457 * 24 23 22 26 26 O 1.21509 * 119.99580 * 180.02562 * 25 24 23 27 27 O 1.34756 * 120.00326 * 0.02562 * 25 24 23 28 28 H 1.09008 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47256 * 299.99555 * 1 2 3 30 30 H 1.08997 * 109.47285 * 59.99991 * 1 2 3 31 31 H 1.08002 * 119.95323 * 359.97438 * 4 3 2 32 32 H 1.09004 * 109.47210 * 330.00552 * 6 5 4 33 33 H 1.08994 * 109.47121 * 210.00522 * 6 5 4 34 34 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 35 35 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 36 36 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 37 37 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 38 38 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 39 39 H 1.08999 * 109.47616 * 300.00389 * 12 11 10 40 40 H 1.09003 * 109.47280 * 60.00024 * 12 11 10 41 41 H 1.08998 * 109.47382 * 300.00476 * 13 12 11 42 42 H 1.09005 * 109.46800 * 60.00677 * 13 12 11 43 43 H 0.96996 * 120.00393 * 180.02562 * 17 16 14 44 44 H 1.08003 * 119.84947 * 179.71906 * 22 5 4 45 45 H 1.08007 * 120.04397 * 180.23587 * 23 22 5 46 46 H 0.96695 * 116.99947 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9204 3.6032 0.0011 6 6 1.0966 4.8651 0.0011 7 7 0.8293 5.2737 1.3823 8 6 0.1096 6.3862 1.6286 9 8 -0.3211 7.0464 0.7068 10 6 -0.1602 6.8100 3.0494 11 6 -0.9924 8.0938 3.0495 12 6 -1.2668 8.5237 4.4919 13 6 -2.0996 9.8072 4.4921 14 6 -2.3694 10.2310 5.9129 15 1 -1.9856 9.6433 6.7337 16 6 -3.1069 11.3682 6.1649 17 7 -3.5747 12.0836 5.1653 18 14 -3.4407 11.8939 7.9260 19 1 -2.1522 12.1404 8.6217 20 1 -4.2501 13.1389 7.9262 21 1 -4.1859 10.8197 8.6304 22 6 3.3037 3.6840 -0.0044 23 6 4.0671 2.5372 0.0003 24 6 3.4446 1.2858 -0.0001 25 6 4.2550 0.0546 -0.0012 26 8 3.7100 -1.0314 -0.0021 27 8 5.6003 0.1334 -0.0012 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2137 2.3194 0.0005 32 1 0.1529 4.6830 -0.5131 33 1 1.6434 5.6559 -0.5124 34 1 1.1739 4.7459 2.1196 35 1 -0.7085 6.0220 3.5657 36 1 0.7855 6.9895 3.5608 37 1 -0.4445 8.8820 2.5331 38 1 -1.9382 7.9138 2.5382 39 1 -1.8149 7.7354 5.0080 40 1 -0.3213 8.7036 5.0036 41 1 -1.5519 10.5957 3.9759 42 1 -3.0451 9.6268 3.9806 43 1 -4.0932 12.8839 5.3426 44 1 3.7858 4.6505 -0.0085 45 1 5.1450 2.6050 -0.0001 46 1 6.0889 -0.7011 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599408989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:50 Heat of formation + Delta-G solvation = -162.580203 kcal Electronic energy + Delta-G solvation = -27005.537882 eV Core-core repulsion = 22859.741391 eV Total energy + Delta-G solvation = -4145.796492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28150 -39.99425 -39.63541 -38.19239 -36.38419 -35.30904 -34.76891 -32.68830 -32.20885 -30.82470 -29.84695 -28.07113 -27.39083 -25.46197 -23.64341 -22.90795 -22.24208 -21.53585 -20.38722 -19.98112 -18.73347 -18.28459 -17.42932 -16.97948 -16.58708 -16.47928 -16.25559 -15.97563 -15.77334 -15.74215 -15.08637 -14.83506 -14.51676 -14.41913 -14.03097 -13.72085 -13.55875 -13.15499 -13.00596 -12.67049 -12.55179 -12.24009 -12.01474 -11.92189 -11.81657 -11.69368 -11.65026 -11.58538 -10.97133 -10.87790 -10.54160 -10.53488 -10.41429 -10.03164 -9.61685 -9.59553 -9.30596 -9.22028 -8.99423 -8.87497 -8.30111 -5.94978 -3.97625 0.05261 0.78076 2.04072 2.55950 2.63868 2.65823 2.96102 3.34774 3.35292 3.39769 3.41980 3.93362 4.14390 4.40266 4.48950 4.49699 4.62341 4.67720 4.72814 4.82080 4.94279 5.05581 5.07662 5.15666 5.29932 5.35348 5.39063 5.40334 5.53563 5.61103 5.83893 5.89340 6.03319 6.06815 6.12789 6.16230 6.29434 6.53734 6.72070 6.83221 7.01122 7.19495 7.33281 7.51875 7.73880 7.90036 8.06190 8.17777 8.47971 9.09837 9.65958 11.16237 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.001524 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.158823 B =18367.251267 C =18418.111083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.285 6.285 3 C 0.192 3.808 4 C -0.205 4.205 5 C -0.025 4.025 6 C 0.153 3.847 7 N -0.735 5.735 8 C 0.513 3.487 9 O -0.533 6.533 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.155 4.155 23 C -0.022 4.022 24 C -0.163 4.163 25 C 0.525 3.475 26 O -0.497 6.497 27 O -0.516 6.516 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.138 0.862 45 H 0.148 0.852 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.083 -26.823 -13.322 34.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.196 6.196 3 C 0.144 3.856 4 C -0.225 4.225 5 C -0.026 4.026 6 C 0.030 3.970 7 N -0.390 5.390 8 C 0.301 3.699 9 O -0.408 6.408 10 C -0.178 4.178 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.173 4.173 23 C -0.041 4.041 24 C -0.165 4.165 25 C 0.369 3.631 26 O -0.385 6.385 27 O -0.329 6.329 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 16.338 -26.303 -14.049 34.002 hybrid contribution 0.036 -0.396 1.268 1.329 sum 16.374 -26.699 -12.782 33.827 Atomic orbital electron populations 1.23255 0.77797 1.04775 1.01793 1.86331 1.21605 1.25231 1.86395 1.18977 0.90482 0.85176 0.91008 1.21178 1.00778 0.91009 1.09487 1.20000 0.94079 0.94116 0.94423 1.20253 0.99063 0.92764 0.84910 1.46116 1.56838 1.28371 1.07638 1.21158 0.76774 0.79339 0.92635 1.90721 1.50250 1.53159 1.46686 1.21799 1.02876 1.01111 0.91996 1.21456 0.99281 0.94199 0.99213 1.21651 1.00087 1.00061 0.93020 1.19095 0.94718 0.91146 0.96780 1.21248 1.33068 1.09039 0.92626 0.92812 1.25037 0.95936 0.96637 0.96929 1.69961 1.36326 1.16504 1.30640 0.86670 0.78249 0.77884 0.85237 1.20294 1.21317 1.20312 1.21051 0.92772 0.99176 1.04315 1.21345 1.00879 0.89911 0.91929 1.18406 0.89467 0.92186 1.16475 1.20539 0.80557 0.89016 0.72958 1.90950 1.72740 1.29642 1.45158 1.84541 1.19969 1.42105 1.86275 0.87605 0.92061 0.92146 0.84017 0.90281 0.89934 0.76403 0.89099 0.89024 0.91759 0.91803 0.93488 0.93456 0.96574 0.96593 0.92995 0.84424 0.83472 0.72714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.28 -2.64 8.57 -40.50 -0.35 -2.99 16 3 C 0.19 1.63 6.70 -38.67 -0.26 1.37 16 4 C -0.21 -1.41 8.67 -39.48 -0.34 -1.75 16 5 C -0.03 -0.17 5.25 -104.57 -0.55 -0.72 16 6 C 0.15 1.21 5.79 -5.19 -0.03 1.18 16 7 N -0.74 -6.44 5.55 -61.47 -0.34 -6.78 16 8 C 0.51 6.56 7.83 -10.98 -0.09 6.47 16 9 O -0.53 -9.13 15.98 5.55 0.09 -9.04 16 10 C -0.14 -1.72 5.70 -27.89 -0.16 -1.88 16 11 C -0.10 -1.80 4.50 -26.74 -0.12 -1.92 16 12 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.15 -0.92 9.67 -39.63 -0.38 -1.30 16 23 C -0.02 -0.14 9.61 -39.18 -0.38 -0.52 16 24 C -0.16 -1.36 5.88 -104.86 -0.62 -1.98 16 25 C 0.53 4.73 8.26 34.46 0.28 5.01 16 26 O -0.50 -6.03 15.95 -26.60 -0.42 -6.45 16 27 O -0.52 -2.93 12.68 -40.64 -0.52 -3.44 16 28 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 32 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.40 2.59 8.46 -40.82 -0.35 2.24 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.10 -51.92 -0.42 0.77 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 44 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.15 0.66 7.61 -52.48 -0.40 0.26 16 46 H 0.41 0.61 9.11 45.56 0.42 1.02 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -37.78 395.52 -8.26 -46.04 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.06 Total: -2.73 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.33 Total: -10.71 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.40 Total: -33.45 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.20 Total: -21.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.78 -8.26 -46.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599408989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.545 kcal (2) G-P(sol) polarization free energy of solvation -37.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds