Wall clock time and date at job start Tue Mar 31 2020 18:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00537 * 2 1 4 4 C 1.38632 * 120.02536 * 0.02562 * 3 2 1 5 5 C 1.38629 * 119.89285 * 180.02562 * 4 3 2 6 6 O 1.35896 * 120.03100 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99731 * 0.02562 * 6 5 4 8 8 C 1.38774 * 119.94555 * 0.02562 * 5 4 3 9 9 C 1.38178 * 120.05360 * 359.97438 * 8 5 4 10 10 C 1.50699 * 119.94459 * 179.74897 * 9 8 5 11 11 H 1.08991 * 109.47220 * 345.26678 * 10 9 8 12 12 N 1.46901 * 109.46792 * 225.26580 * 10 9 8 13 13 C 1.46907 * 110.99644 * 154.69171 * 12 10 9 14 14 C 1.53000 * 109.46945 * 185.38410 * 13 12 10 15 15 C 1.50697 * 115.55075 * 277.89504 * 14 13 12 16 16 H 1.08004 * 120.00073 * 114.99875 * 15 14 13 17 17 C 1.37880 * 119.99917 * 294.99949 * 15 14 13 18 18 N 1.31517 * 119.99805 * 353.61370 * 17 15 14 19 19 Si 1.86801 * 120.00146 * 173.61147 * 17 15 14 20 20 H 1.48505 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47011 * 119.99873 * 19 17 15 22 22 H 1.48496 * 109.47447 * 240.00193 * 19 17 15 23 23 C 1.52997 * 117.49793 * 132.18795 * 14 13 12 24 24 C 1.52998 * 60.00263 * 252.50985 * 23 14 13 25 25 C 1.50704 * 109.47043 * 105.27124 * 10 9 8 26 26 O 1.20826 * 120.00075 * 119.99516 * 25 10 9 27 27 O 1.34229 * 119.99561 * 299.99972 * 25 10 9 28 28 C 1.38180 * 120.10599 * 0.02562 * 9 8 5 29 29 H 1.09000 * 109.46957 * 59.99391 * 1 2 3 30 30 H 1.08994 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46521 * 299.99978 * 1 2 3 32 32 H 1.07999 * 120.05193 * 0.04138 * 4 3 2 33 33 H 1.09004 * 109.46973 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47145 * 299.99856 * 7 6 5 35 35 H 1.08998 * 109.46865 * 60.00105 * 7 6 5 36 36 H 1.07995 * 119.97479 * 180.02562 * 8 5 4 37 37 H 1.00895 * 111.00384 * 278.64129 * 12 10 9 38 38 H 1.09003 * 109.47019 * 305.38160 * 13 12 10 39 39 H 1.09000 * 109.46812 * 65.38115 * 13 12 10 40 40 H 0.97002 * 119.99616 * 185.01513 * 18 17 15 41 41 H 1.09004 * 117.49750 * 359.97438 * 23 14 13 42 42 H 1.09000 * 117.50161 * 145.02236 * 23 14 13 43 43 H 1.09003 * 117.50081 * 252.51510 * 24 23 14 44 44 H 1.08994 * 117.52066 * 107.47713 * 24 23 14 45 45 H 0.96704 * 116.99750 * 180.02562 * 27 25 10 46 46 H 1.08008 * 119.96872 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2917 2.3739 0.0005 5 6 1.9240 3.6075 0.0000 6 8 1.1872 4.7494 0.0000 7 6 -0.2344 4.6042 0.0011 8 6 3.3101 3.6755 -0.0016 9 6 4.0598 2.5148 -0.0021 10 6 5.5648 2.5915 -0.0096 11 1 5.8759 3.6018 -0.2751 12 7 6.0987 1.6403 -0.9936 13 6 7.4208 2.0650 -1.4728 14 6 7.8840 1.1272 -2.5894 15 6 8.5095 -0.1661 -2.1343 16 1 8.0254 -1.1065 -2.3532 17 6 9.6997 -0.1490 -1.4386 18 7 10.3530 0.9815 -1.2809 19 14 10.3845 -1.7315 -0.7200 20 1 9.4669 -2.8558 -1.0349 21 1 11.7207 -2.0043 -1.3075 22 1 10.5104 -1.5924 0.7531 23 6 8.4321 1.7664 -3.8668 24 6 7.0561 1.0974 -3.8758 25 6 6.0922 2.2470 1.3595 26 8 6.8363 1.3056 1.5010 27 8 5.7351 2.9858 2.4216 28 6 3.4318 1.2840 -0.0016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 0.2131 2.3189 0.0016 33 1 -0.7003 5.5896 0.0015 34 1 -0.5443 4.0557 -0.8884 35 1 -0.5429 4.0565 0.8916 36 1 3.8032 4.6363 -0.0016 37 1 6.1352 0.7071 -0.6116 38 1 7.3584 3.0834 -1.8562 39 1 8.1342 2.0298 -0.6494 40 1 11.2247 0.9826 -0.8555 41 1 8.4622 2.8551 -3.9119 42 1 9.2453 1.2516 -4.3784 43 1 6.9642 0.1423 -4.3930 44 1 6.1813 1.7455 -3.9263 45 1 6.0990 2.7265 3.2792 46 1 4.0200 0.3782 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599452935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:53 Heat of formation + Delta-G solvation = -104.713538 kcal Electronic energy + Delta-G solvation = -29568.572068 eV Core-core repulsion = 25425.284863 eV Total energy + Delta-G solvation = -4143.287205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78310 -40.00746 -38.90842 -37.39544 -36.64413 -35.86337 -34.11336 -31.90318 -30.69385 -30.34588 -28.34159 -26.95724 -26.76320 -25.45101 -23.84985 -22.48403 -22.11335 -20.97313 -20.32204 -19.11616 -18.55761 -17.71073 -17.08930 -16.78288 -16.14527 -16.08100 -15.98798 -15.82408 -15.63202 -15.33748 -14.85269 -14.55780 -14.39287 -13.88512 -13.68953 -13.30505 -13.11568 -12.79172 -12.61250 -12.38251 -12.15757 -11.85917 -11.76242 -11.50924 -11.41903 -11.25788 -11.20528 -11.18153 -10.87920 -10.82972 -10.77540 -10.36779 -10.23714 -10.07766 -9.32710 -8.78223 -8.63370 -8.43792 -8.13008 -7.99407 -7.74910 -5.95819 -3.99922 1.22193 1.49087 2.45882 3.06228 3.15243 3.27814 3.35309 3.44186 3.47585 3.74869 4.48521 4.54890 4.72793 4.75937 4.80977 4.87875 4.92817 5.00499 5.12819 5.16156 5.19721 5.23917 5.26650 5.30861 5.44073 5.58274 5.65339 5.82028 6.16276 6.17058 6.24202 6.50142 6.50606 6.57572 6.62875 6.72343 6.87125 6.90689 6.93873 7.06102 7.19733 7.41512 7.54118 7.56924 7.75344 7.94934 8.04460 8.16917 8.54989 9.00790 9.64871 11.12118 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003305 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.891530 B = 8469.329548 C = 8517.456984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.163 3.837 4 C -0.296 4.296 5 C 0.160 3.840 6 O -0.314 6.314 7 C 0.028 3.972 8 C -0.166 4.166 9 C 0.015 3.985 10 C 0.137 3.863 11 H 0.122 0.878 12 N -0.645 5.645 13 C 0.097 3.903 14 C 0.055 3.945 15 C -0.492 4.492 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.176 4.176 24 C -0.194 4.194 25 C 0.447 3.553 26 O -0.491 6.491 27 O -0.519 6.519 28 C -0.157 4.157 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.134 0.866 37 H 0.360 0.640 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.258 0.742 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.401 0.599 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 6.574 5.604 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.117 3.883 4 C -0.315 4.315 5 C 0.115 3.885 6 O -0.227 6.227 7 C -0.067 4.067 8 C -0.185 4.185 9 C 0.014 3.986 10 C 0.024 3.976 11 H 0.140 0.860 12 N -0.278 5.278 13 C -0.031 4.031 14 C 0.054 3.946 15 C -0.530 4.530 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.516 5.516 19 Si 0.716 3.284 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.210 1.210 23 C -0.215 4.215 24 C -0.231 4.231 25 C 0.285 3.715 26 O -0.377 6.377 27 O -0.329 6.329 28 C -0.176 4.176 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.182 0.818 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.259 0.741 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.177 6.768 4.869 22.759 hybrid contribution 0.824 -1.196 1.695 2.232 sum -20.353 5.571 6.564 22.099 Atomic orbital electron populations 1.23035 0.78738 1.03898 1.01045 1.86127 1.21083 1.26784 1.88449 1.18614 0.91845 0.83499 0.94339 1.21179 1.00164 0.92046 1.18136 1.18542 0.90909 0.84317 0.94750 1.86085 1.18905 1.29064 1.88647 1.23030 0.78790 1.03719 1.01174 1.20084 0.90179 0.98907 1.09367 1.18847 0.92889 0.91777 0.95064 1.20360 0.91375 1.01418 0.84465 0.86049 1.61018 1.28506 1.05492 1.32735 1.21671 0.86317 0.96127 0.99022 1.18675 0.96182 0.95237 0.84472 1.20547 1.06536 0.90999 1.34911 0.92235 1.24943 0.96842 0.95850 0.95324 1.69968 1.13157 1.25268 1.43223 0.86604 0.78668 0.84033 0.79125 1.19686 1.21262 1.20999 1.22729 0.95587 0.96658 1.06512 1.22744 0.93541 1.00764 1.06054 1.24987 0.78369 0.80192 0.87905 1.90826 1.33179 1.28240 1.85414 1.84603 1.70324 1.58436 1.19553 1.20163 0.91050 0.98673 1.07757 0.92764 0.88213 0.92920 0.85089 0.88260 0.92754 0.92860 0.84765 0.81827 0.93932 0.92310 0.93214 0.92114 0.90517 0.91060 0.91084 0.74073 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.00 10.50 -19.41 -0.20 -4.21 16 3 C 0.16 2.23 6.68 -39.24 -0.26 1.97 16 4 C -0.30 -3.51 8.02 -39.29 -0.32 -3.82 16 5 C 0.16 2.03 6.68 -39.24 -0.26 1.77 16 6 O -0.31 -3.55 10.50 -19.41 -0.20 -3.75 16 7 C 0.03 0.20 9.81 101.05 0.99 1.19 16 8 C -0.17 -2.26 9.60 -39.40 -0.38 -2.64 16 9 C 0.02 0.23 4.87 -104.67 -0.51 -0.28 16 10 C 0.14 2.25 2.70 -70.01 -0.19 2.06 16 11 H 0.12 1.83 7.51 -51.93 -0.39 1.44 16 12 N -0.64 -12.61 5.58 -109.18 -0.61 -13.22 16 13 C 0.10 2.19 5.22 -3.82 -0.02 2.17 16 14 C 0.06 1.36 1.49 -155.66 -0.23 1.13 16 15 C -0.49 -13.55 8.83 -34.44 -0.30 -13.86 16 16 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 17 C 0.07 2.05 5.26 -17.82 -0.09 1.96 16 18 N -0.88 -25.23 12.47 55.43 0.69 -24.54 16 19 Si 0.89 21.92 29.55 -169.99 -5.02 16.90 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 C -0.18 -4.17 9.88 -26.73 -0.26 -4.43 16 24 C -0.19 -4.31 9.89 -26.73 -0.26 -4.58 16 25 C 0.45 7.63 7.44 36.01 0.27 7.89 16 26 O -0.49 -10.35 16.07 -18.75 -0.30 -10.65 16 27 O -0.52 -6.99 13.34 -39.25 -0.52 -7.51 16 28 C -0.16 -2.41 9.21 -39.41 -0.36 -2.78 16 29 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.13 1.18 4.54 -52.49 -0.24 0.94 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 35 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 36 H 0.13 1.65 8.00 -52.49 -0.42 1.23 16 37 H 0.36 7.65 7.23 -39.29 -0.28 7.37 16 38 H 0.04 0.90 7.71 -51.93 -0.40 0.50 16 39 H 0.06 1.53 6.73 -51.93 -0.35 1.18 16 40 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 41 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 42 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.40 3.81 9.10 45.56 0.41 4.23 16 46 H 0.14 2.21 7.43 -52.48 -0.39 1.82 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -33.07 388.52 -7.25 -40.32 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.73 Total: 11.83 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.21 Total: -11.03 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.08 Total: -37.75 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.23 Total: -26.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.07 -7.25 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599452935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.392 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds