Wall clock time and date at job start Tue Mar 31 2020 18:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00537 * 2 1 4 4 C 1.38632 * 120.02536 * 0.02562 * 3 2 1 5 5 C 1.38629 * 119.89285 * 180.02562 * 4 3 2 6 6 O 1.35896 * 120.03100 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99731 * 0.02562 * 6 5 4 8 8 C 1.38774 * 119.94555 * 0.02562 * 5 4 3 9 9 C 1.38178 * 120.05360 * 359.97438 * 8 5 4 10 10 C 1.50699 * 119.94459 * 179.74897 * 9 8 5 11 11 H 1.08991 * 109.47220 * 345.26678 * 10 9 8 12 12 N 1.46901 * 109.46792 * 225.26580 * 10 9 8 13 13 C 1.46907 * 110.99644 * 154.69171 * 12 10 9 14 14 C 1.53000 * 109.46945 * 185.38410 * 13 12 10 15 15 C 1.50697 * 115.55075 * 277.89504 * 14 13 12 16 16 H 1.08004 * 120.00073 * 114.99875 * 15 14 13 17 17 C 1.37880 * 119.99917 * 294.99949 * 15 14 13 18 18 N 1.31517 * 119.99805 * 353.61370 * 17 15 14 19 19 Si 1.86801 * 120.00146 * 173.61147 * 17 15 14 20 20 H 1.48505 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47011 * 119.99873 * 19 17 15 22 22 H 1.48496 * 109.47447 * 240.00193 * 19 17 15 23 23 C 1.52997 * 117.49793 * 132.18795 * 14 13 12 24 24 C 1.52998 * 60.00263 * 252.50985 * 23 14 13 25 25 C 1.50704 * 109.47043 * 105.27124 * 10 9 8 26 26 O 1.20826 * 120.00075 * 119.99516 * 25 10 9 27 27 O 1.34229 * 119.99561 * 299.99972 * 25 10 9 28 28 C 1.38180 * 120.10599 * 0.02562 * 9 8 5 29 29 H 1.09000 * 109.46957 * 59.99391 * 1 2 3 30 30 H 1.08994 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46521 * 299.99978 * 1 2 3 32 32 H 1.07999 * 120.05193 * 0.04138 * 4 3 2 33 33 H 1.09004 * 109.46973 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47145 * 299.99856 * 7 6 5 35 35 H 1.08998 * 109.46865 * 60.00105 * 7 6 5 36 36 H 1.07995 * 119.97479 * 180.02562 * 8 5 4 37 37 H 1.00895 * 111.00384 * 278.64129 * 12 10 9 38 38 H 1.09003 * 109.47019 * 305.38160 * 13 12 10 39 39 H 1.09000 * 109.46812 * 65.38115 * 13 12 10 40 40 H 0.97002 * 119.99616 * 185.01513 * 18 17 15 41 41 H 1.09004 * 117.49750 * 359.97438 * 23 14 13 42 42 H 1.09000 * 117.50161 * 145.02236 * 23 14 13 43 43 H 1.09003 * 117.50081 * 252.51510 * 24 23 14 44 44 H 1.08994 * 117.52066 * 107.47713 * 24 23 14 45 45 H 0.96704 * 116.99750 * 180.02562 * 27 25 10 46 46 H 1.08008 * 119.96872 * 179.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2917 2.3739 0.0005 5 6 1.9240 3.6075 0.0000 6 8 1.1872 4.7494 0.0000 7 6 -0.2344 4.6042 0.0011 8 6 3.3101 3.6755 -0.0016 9 6 4.0598 2.5148 -0.0021 10 6 5.5648 2.5915 -0.0096 11 1 5.8759 3.6018 -0.2751 12 7 6.0987 1.6403 -0.9936 13 6 7.4208 2.0650 -1.4728 14 6 7.8840 1.1272 -2.5894 15 6 8.5095 -0.1661 -2.1343 16 1 8.0254 -1.1065 -2.3532 17 6 9.6997 -0.1490 -1.4386 18 7 10.3530 0.9815 -1.2809 19 14 10.3845 -1.7315 -0.7200 20 1 9.4669 -2.8558 -1.0349 21 1 11.7207 -2.0043 -1.3075 22 1 10.5104 -1.5924 0.7531 23 6 8.4321 1.7664 -3.8668 24 6 7.0561 1.0974 -3.8758 25 6 6.0922 2.2470 1.3595 26 8 6.8363 1.3056 1.5010 27 8 5.7351 2.9858 2.4216 28 6 3.4318 1.2840 -0.0016 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 0.2131 2.3189 0.0016 33 1 -0.7003 5.5896 0.0015 34 1 -0.5443 4.0557 -0.8884 35 1 -0.5429 4.0565 0.8916 36 1 3.8032 4.6363 -0.0016 37 1 6.1352 0.7071 -0.6116 38 1 7.3584 3.0834 -1.8562 39 1 8.1342 2.0298 -0.6494 40 1 11.2247 0.9826 -0.8555 41 1 8.4622 2.8551 -3.9119 42 1 9.2453 1.2516 -4.3784 43 1 6.9642 0.1423 -4.3930 44 1 6.1813 1.7455 -3.9263 45 1 6.0990 2.7265 3.2792 46 1 4.0200 0.3782 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599452935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:53 Heat of formation + Delta-G solvation = -127.613195 kcal Electronic energy + Delta-G solvation = -29569.565071 eV Core-core repulsion = 25425.284863 eV Total energy + Delta-G solvation = -4144.280209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89159 -41.19284 -39.75091 -38.86337 -38.00247 -37.21617 -35.52973 -34.01456 -31.89024 -31.27227 -29.17402 -28.17813 -27.49232 -27.42232 -25.48178 -23.52703 -23.20926 -22.79114 -21.49894 -20.97960 -19.61495 -19.01467 -18.28082 -17.89595 -17.86405 -17.07309 -16.94906 -16.86879 -16.65700 -16.57666 -16.35441 -15.83845 -15.61987 -15.57768 -15.21269 -14.49776 -14.40628 -14.18334 -13.64610 -13.42632 -13.35052 -13.25413 -13.05108 -12.91009 -12.86241 -12.72819 -12.57415 -12.42808 -12.32631 -12.20358 -12.11208 -11.99214 -11.93488 -11.37327 -11.21144 -10.79184 -10.42415 -10.02654 -9.62026 -9.45451 -8.98085 -8.08731 -6.16791 0.18666 0.47206 1.11365 1.36008 1.40981 1.49509 2.02887 2.27990 2.36485 2.42731 2.67856 3.14841 3.23858 3.58646 3.77764 3.94596 3.96492 4.10222 4.11734 4.28288 4.34585 4.36141 4.38872 4.41447 4.43130 4.49098 4.67968 4.69010 4.74925 4.77011 4.79552 5.01608 5.03878 5.11072 5.20197 5.21817 5.32198 5.49400 5.50628 5.56277 5.65944 5.70122 5.86339 6.08503 6.23266 6.31549 6.47567 6.53424 6.88858 6.92743 7.49522 8.98370 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003305 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.891530 B = 8469.329548 C = 8517.456984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.159 3.841 4 C -0.286 4.286 5 C 0.163 3.837 6 O -0.325 6.325 7 C 0.015 3.985 8 C -0.174 4.174 9 C 0.010 3.990 10 C 0.137 3.863 11 H 0.137 0.863 12 N -0.639 5.639 13 C 0.113 3.887 14 C 0.027 3.973 15 C -0.504 4.504 16 H 0.047 0.953 17 C 0.031 3.969 18 N -0.903 5.903 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.289 1.289 23 C -0.178 4.178 24 C -0.169 4.169 25 C 0.456 3.544 26 O -0.539 6.539 27 O -0.504 6.504 28 C -0.183 4.183 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.146 0.854 37 H 0.347 0.653 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.421 0.579 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.086 7.659 5.780 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.248 6.248 3 C 0.113 3.887 4 C -0.305 4.305 5 C 0.117 3.883 6 O -0.239 6.239 7 C -0.079 4.079 8 C -0.193 4.193 9 C 0.009 3.991 10 C 0.024 3.976 11 H 0.155 0.845 12 N -0.270 5.270 13 C -0.016 4.016 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.170 4.170 18 N -0.541 5.541 19 Si 0.767 3.233 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.216 1.216 23 C -0.217 4.217 24 C -0.206 4.206 25 C 0.296 3.704 26 O -0.429 6.429 27 O -0.315 6.315 28 C -0.202 4.202 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.180 0.820 33 H 0.140 0.860 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.282 0.718 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.111 7.875 5.056 25.863 hybrid contribution 1.522 -1.483 1.694 2.718 sum -22.590 6.392 6.750 24.427 Atomic orbital electron populations 1.23395 0.76195 1.05723 1.02463 1.86104 1.23794 1.26628 1.88300 1.18651 0.91432 0.84552 0.94048 1.21416 1.01617 0.90920 1.16541 1.18600 0.90833 0.85115 0.93740 1.86083 1.21115 1.28441 1.88225 1.23401 0.76429 1.05729 1.02317 1.20192 0.90984 0.98698 1.09437 1.18608 0.91610 0.92303 0.96538 1.20410 0.92500 1.01046 0.83629 0.84522 1.60957 1.26445 1.05376 1.34257 1.21338 0.86848 0.96291 0.97089 1.18783 0.97781 0.94996 0.85783 1.20782 1.06652 0.91857 1.34883 0.93455 1.25535 0.97345 0.98304 0.95773 1.70056 1.13333 1.26617 1.44054 0.85782 0.78361 0.81259 0.77932 1.19300 1.20395 1.21597 1.22682 0.95915 0.97387 1.05674 1.22706 0.93440 1.00766 1.03709 1.24990 0.77153 0.79382 0.88839 1.90813 1.35448 1.30402 1.86189 1.84537 1.69711 1.57247 1.20047 1.20109 0.92162 0.98045 1.09907 0.91410 0.86429 0.91265 0.81992 0.86006 0.91664 0.91549 0.83672 0.83275 0.92562 0.96168 0.93383 0.90624 0.92257 0.91177 0.89097 0.71792 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.23 10.50 -92.39 -0.97 -9.20 16 3 C 0.16 4.20 6.68 22.49 0.15 4.35 16 4 C -0.29 -6.02 8.02 22.46 0.18 -5.84 16 5 C 0.16 3.74 6.68 22.49 0.15 3.89 16 6 O -0.33 -6.35 10.50 -92.38 -0.97 -7.32 16 7 C 0.02 0.15 9.81 113.37 1.11 1.27 16 8 C -0.17 -4.46 9.60 22.38 0.21 -4.24 16 9 C 0.01 0.31 4.87 -19.89 -0.10 0.21 16 10 C 0.14 4.51 2.70 43.42 0.12 4.63 16 11 H 0.14 4.02 7.51 -2.39 -0.02 4.01 16 12 N -0.64 -25.55 5.58 -499.34 -2.79 -28.34 16 13 C 0.11 5.21 5.22 86.30 0.45 5.66 16 14 C 0.03 1.36 1.49 -52.93 -0.08 1.29 16 15 C -0.50 -28.43 8.83 25.60 0.23 -28.21 16 16 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 17 C 0.03 1.76 5.26 84.65 0.45 2.20 16 18 N -0.90 -53.03 12.47 21.45 0.27 -52.76 16 19 Si 0.94 46.03 29.55 68.60 2.03 48.05 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 23 C -0.18 -8.40 9.88 30.59 0.30 -8.10 16 24 C -0.17 -7.42 9.89 30.60 0.30 -7.12 16 25 C 0.46 15.79 7.44 71.24 0.53 16.32 16 26 O -0.54 -23.64 16.07 21.96 0.35 -23.29 16 27 O -0.50 -13.17 13.34 -51.41 -0.69 -13.86 16 28 C -0.18 -5.68 9.21 22.38 0.21 -5.47 16 29 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 32 H 0.16 2.26 4.54 -2.91 -0.01 2.25 16 33 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 35 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 36 H 0.15 3.29 8.00 -2.91 -0.02 3.27 16 37 H 0.35 15.49 7.23 -89.70 -0.65 14.84 16 38 H 0.06 2.38 7.71 -2.39 -0.02 2.37 16 39 H 0.02 1.08 6.73 -2.39 -0.02 1.06 16 40 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 41 H 0.08 3.29 8.07 -2.38 -0.02 3.27 16 42 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 45 H 0.42 7.57 9.10 -74.05 -0.67 6.90 16 46 H 0.11 3.92 7.43 -2.91 -0.02 3.90 16 Total: -1.00 -73.00 388.52 2.26 -70.74 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.30 Total: 33.80 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 5.32 Total: -17.83 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.52 Total: -81.10 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -2.27 Total: -53.67 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.00 2.26 -70.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599452935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.874 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds