Wall clock time and date at job start Tue Mar 31 2020 18:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35893 * 116.99657 * 2 1 4 4 C 1.38627 * 120.03184 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.89445 * 179.97438 * 4 3 2 6 6 O 1.35891 * 120.03027 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00086 * 0.02579 * 6 5 4 8 8 C 1.38771 * 119.94130 * 0.02562 * 5 4 3 9 9 C 1.38181 * 120.05772 * 0.02562 * 8 5 4 10 10 C 1.50695 * 119.94399 * 179.97438 * 9 8 5 11 11 H 1.08991 * 109.47603 * 19.89597 * 10 9 8 12 12 N 1.46901 * 109.46832 * 139.89278 * 10 9 8 13 13 C 1.46901 * 111.00267 * 205.21899 * 12 10 9 14 14 C 1.52996 * 109.47319 * 184.53308 * 13 12 10 15 15 C 1.50701 * 115.54762 * 80.89013 * 14 13 12 16 16 H 1.08000 * 119.99849 * 219.63640 * 15 14 13 17 17 C 1.37870 * 120.00176 * 39.63620 * 15 14 13 18 18 N 1.31517 * 120.00150 * 18.27059 * 17 15 14 19 19 Si 1.86806 * 120.00137 * 198.27204 * 17 15 14 20 20 H 1.48493 * 109.46926 * 89.99738 * 19 17 15 21 21 H 1.48498 * 109.47163 * 210.00023 * 19 17 15 22 22 H 1.48499 * 109.46678 * 329.99978 * 19 17 15 23 23 C 1.53003 * 117.50005 * 295.21649 * 14 13 12 24 24 C 1.52998 * 60.03286 * 252.49916 * 23 14 13 25 25 C 1.50696 * 109.47083 * 259.88938 * 10 9 8 26 26 O 1.20829 * 120.00196 * 240.00206 * 25 10 9 27 27 O 1.34226 * 119.99810 * 60.00635 * 25 10 9 28 28 C 1.38170 * 120.10641 * 0.23193 * 9 8 5 29 29 H 1.09002 * 109.47431 * 299.99758 * 1 2 3 30 30 H 1.09004 * 109.47653 * 59.99886 * 1 2 3 31 31 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.05672 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47351 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46989 * 299.99839 * 7 6 5 35 35 H 1.09006 * 109.47155 * 59.99468 * 7 6 5 36 36 H 1.07998 * 119.97398 * 179.97438 * 8 5 4 37 37 H 1.00897 * 111.00575 * 329.18034 * 12 10 9 38 38 H 1.09009 * 109.46350 * 64.53204 * 13 12 10 39 39 H 1.08999 * 109.47261 * 304.54264 * 13 12 10 40 40 H 0.97002 * 120.00086 * 184.97377 * 18 17 15 41 41 H 1.09001 * 117.49781 * 0.02562 * 23 14 13 42 42 H 1.08999 * 117.49873 * 144.99477 * 23 14 13 43 43 H 1.08997 * 117.49911 * 107.49924 * 24 23 14 44 44 H 1.08996 * 117.50037 * 252.52107 * 24 23 14 45 45 H 0.96706 * 117.00056 * 179.97438 * 27 25 10 46 46 H 1.07999 * 119.97174 * 179.72106 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3738 0.0005 5 6 1.9237 3.6077 0.0011 6 8 1.1869 4.7495 0.0011 7 6 -0.2347 4.6042 0.0011 8 6 3.3098 3.6756 0.0005 9 6 4.0596 2.5150 -0.0011 10 6 5.5646 2.5918 -0.0022 11 1 5.8786 3.5750 0.3480 12 7 6.1083 1.5580 0.8887 13 6 7.4362 1.9388 1.3883 14 6 8.0167 0.7924 2.2187 15 6 8.6490 -0.3257 1.4306 16 1 8.5085 -1.3509 1.7399 17 6 9.4067 -0.0400 0.3148 18 7 9.8796 1.1738 0.1342 19 14 9.7615 -1.3770 -0.9407 20 1 8.6939 -1.3826 -1.9728 21 1 11.0728 -1.1143 -1.5862 22 1 9.7999 -2.6967 -0.2609 23 6 7.2929 0.4219 3.5148 24 6 8.6403 1.1445 3.5717 25 6 6.0778 2.3695 -1.4016 26 8 6.8204 1.4448 -1.6330 27 8 5.7101 3.1988 -2.3909 28 6 3.4317 1.2842 -0.0070 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3189 0.0005 33 1 -0.7007 5.5895 0.0015 34 1 -0.5439 4.0561 -0.8889 35 1 -0.5440 4.0560 0.8911 36 1 3.8029 4.6365 0.0005 37 1 5.4756 1.3687 1.6515 38 1 7.3487 2.8299 2.0100 39 1 8.0955 2.1472 0.5456 40 1 10.3509 1.3939 -0.6845 41 1 6.4029 0.9946 3.7756 42 1 7.2739 -0.6306 3.7974 43 1 8.6370 2.1928 3.8700 44 1 9.5078 0.5673 3.8914 45 1 6.0653 3.0162 -3.2716 46 1 4.0199 0.3785 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599452937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:57 Heat of formation + Delta-G solvation = -93.339502 kcal Electronic energy + Delta-G solvation = -29842.244480 eV Core-core repulsion = 25699.450490 eV Total energy + Delta-G solvation = -4142.793990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76733 -39.67300 -38.94040 -37.46787 -36.67235 -35.50285 -34.07920 -31.94354 -30.65245 -30.35494 -28.35191 -26.86583 -26.78712 -25.43375 -23.90550 -22.45538 -22.01032 -21.09262 -20.21012 -18.98953 -18.59884 -17.41741 -17.07666 -16.33588 -16.22558 -16.09074 -16.04217 -15.68313 -15.65904 -15.13556 -14.85435 -14.54942 -14.36534 -13.81916 -13.52486 -13.23844 -13.08229 -12.88430 -12.73771 -12.39545 -12.31622 -11.95526 -11.79253 -11.51592 -11.30404 -11.29894 -11.12488 -10.84645 -10.71934 -10.66329 -10.42491 -10.35330 -10.05179 -9.90070 -9.22207 -9.00683 -8.66925 -8.55350 -8.03358 -7.81714 -7.63685 -5.90814 -3.83421 1.15175 1.44291 2.80955 3.07166 3.12853 3.37587 3.49989 3.56499 3.63065 3.70899 4.52944 4.64235 4.69331 4.78243 4.79538 4.84734 4.90878 4.96065 5.09495 5.11785 5.16774 5.22745 5.24575 5.35851 5.51733 5.72427 5.76497 5.83372 6.11923 6.18553 6.22924 6.39161 6.46359 6.56978 6.58970 6.74060 6.77195 6.94444 7.02687 7.03230 7.11023 7.38628 7.41173 7.71846 7.84929 8.07102 8.19229 8.55287 8.62579 9.08726 9.76411 11.16943 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.003571 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.757402 B = 7838.745863 C = 7947.091073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.162 3.838 4 C -0.294 4.294 5 C 0.159 3.841 6 O -0.314 6.314 7 C 0.028 3.972 8 C -0.165 4.165 9 C -0.011 4.011 10 C 0.147 3.853 11 H 0.084 0.916 12 N -0.647 5.647 13 C 0.088 3.912 14 C 0.071 3.929 15 C -0.477 4.477 16 H 0.056 0.944 17 C 0.089 3.911 18 N -0.873 5.873 19 Si 0.883 3.117 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.279 1.279 23 C -0.211 4.211 24 C -0.203 4.203 25 C 0.470 3.530 26 O -0.453 6.453 27 O -0.528 6.528 28 C -0.158 4.158 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.135 0.865 37 H 0.342 0.658 38 H -0.004 1.004 39 H 0.124 0.876 40 H 0.257 0.743 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.402 0.598 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 7.116 -2.035 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.116 3.884 4 C -0.313 4.313 5 C 0.113 3.887 6 O -0.227 6.227 7 C -0.067 4.067 8 C -0.184 4.184 9 C -0.012 4.012 10 C 0.035 3.965 11 H 0.101 0.899 12 N -0.281 5.281 13 C -0.040 4.040 14 C 0.070 3.930 15 C -0.513 4.513 16 H 0.074 0.926 17 C -0.113 4.113 18 N -0.510 5.510 19 Si 0.711 3.289 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.204 1.204 23 C -0.249 4.249 24 C -0.242 4.242 25 C 0.307 3.693 26 O -0.335 6.335 27 O -0.340 6.340 28 C -0.177 4.177 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.014 0.986 39 H 0.141 0.859 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.260 0.740 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.644 6.616 -2.309 21.801 hybrid contribution -0.425 -0.084 -0.583 0.726 sum -21.069 6.533 -2.892 22.248 Atomic orbital electron populations 1.23045 0.78727 1.03966 1.01020 1.86144 1.21070 1.26667 1.88364 1.18665 0.91918 0.83515 0.94309 1.21225 1.00239 0.92065 1.17793 1.18550 0.90897 0.84357 0.94856 1.86086 1.18934 1.29026 1.88632 1.23036 0.78743 1.03762 1.01188 1.20141 0.90230 0.98993 1.09058 1.19087 0.93362 0.91968 0.96745 1.19685 0.89262 0.97421 0.90083 0.89873 1.59974 1.05190 1.40592 1.22318 1.21923 0.87672 0.93513 1.00856 1.18788 0.95134 0.94909 0.84191 1.20324 1.29160 0.91203 1.10613 0.92563 1.24679 0.93705 0.95455 0.97506 1.69930 1.35326 1.20368 1.25377 0.86748 0.77087 0.82320 0.82719 1.19982 1.21991 1.20392 1.22802 0.94280 0.99157 1.08645 1.23004 0.95181 0.97640 1.08349 1.23210 0.79049 0.79967 0.87074 1.90850 1.31131 1.29037 1.82433 1.84509 1.71178 1.56840 1.21507 1.20387 0.91066 0.99230 1.06998 0.92812 0.92882 0.88143 0.85021 0.88218 0.92796 0.92782 0.84728 0.83700 0.98619 0.85889 0.93279 0.91948 0.90673 0.92086 0.90396 0.73984 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.00 10.50 -19.40 -0.20 -4.20 16 3 C 0.16 2.22 6.68 -39.24 -0.26 1.96 16 4 C -0.29 -3.46 8.02 -39.29 -0.32 -3.77 16 5 C 0.16 2.01 6.68 -39.24 -0.26 1.75 16 6 O -0.31 -3.54 10.50 -19.40 -0.20 -3.74 16 7 C 0.03 0.19 9.81 101.05 0.99 1.18 16 8 C -0.16 -2.26 9.60 -39.41 -0.38 -2.64 16 9 C -0.01 -0.16 4.63 -104.67 -0.48 -0.65 16 10 C 0.15 2.56 2.72 -70.02 -0.19 2.37 16 11 H 0.08 1.35 7.71 -51.93 -0.40 0.95 16 12 N -0.65 -13.07 5.21 -109.19 -0.57 -13.64 16 13 C 0.09 2.03 5.05 -3.83 -0.02 2.01 16 14 C 0.07 1.76 1.89 -155.62 -0.29 1.47 16 15 C -0.48 -13.44 8.97 -34.44 -0.31 -13.75 16 16 H 0.06 1.61 7.88 -52.49 -0.41 1.20 16 17 C 0.09 2.54 5.09 -17.82 -0.09 2.45 16 18 N -0.87 -25.09 11.18 55.43 0.62 -24.47 16 19 Si 0.88 22.78 29.58 -169.99 -5.03 17.75 16 20 H -0.27 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 C -0.21 -4.60 9.57 -26.73 -0.26 -4.86 16 24 C -0.20 -4.71 9.89 -26.69 -0.26 -4.97 16 25 C 0.47 8.89 7.44 36.00 0.27 9.15 16 26 O -0.45 -10.67 16.74 -18.75 -0.31 -10.98 16 27 O -0.53 -7.90 13.34 -39.25 -0.52 -8.42 16 28 C -0.16 -2.46 8.94 -39.40 -0.35 -2.81 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.13 1.17 4.54 -52.48 -0.24 0.93 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 35 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 36 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 37 H 0.34 6.37 7.52 -39.29 -0.30 6.07 16 38 H 0.00 -0.09 7.94 -51.92 -0.41 -0.50 16 39 H 0.12 3.26 5.01 -51.93 -0.26 3.00 16 40 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 41 H 0.06 1.21 7.99 -51.93 -0.41 0.80 16 42 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 45 H 0.40 4.43 9.10 45.56 0.41 4.84 16 46 H 0.15 2.59 7.72 -52.49 -0.41 2.19 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -33.93 386.20 -7.31 -41.24 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.68 Total: 10.54 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.23 Total: -9.90 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.05 Total: -38.11 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.24 Total: -27.35 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.93 -7.31 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599452937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.100 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds