Wall clock time and date at job start Tue Mar 31 2020 18:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35893 * 116.99657 * 2 1 4 4 C 1.38627 * 120.03184 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.89445 * 179.97438 * 4 3 2 6 6 O 1.35891 * 120.03027 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00086 * 0.02579 * 6 5 4 8 8 C 1.38771 * 119.94130 * 0.02562 * 5 4 3 9 9 C 1.38181 * 120.05772 * 0.02562 * 8 5 4 10 10 C 1.50695 * 119.94399 * 179.97438 * 9 8 5 11 11 H 1.08991 * 109.47603 * 19.89597 * 10 9 8 12 12 N 1.46901 * 109.46832 * 139.89278 * 10 9 8 13 13 C 1.46901 * 111.00267 * 205.21899 * 12 10 9 14 14 C 1.52996 * 109.47319 * 184.53308 * 13 12 10 15 15 C 1.50701 * 115.54762 * 80.89013 * 14 13 12 16 16 H 1.08000 * 119.99849 * 219.63640 * 15 14 13 17 17 C 1.37870 * 120.00176 * 39.63620 * 15 14 13 18 18 N 1.31517 * 120.00150 * 18.27059 * 17 15 14 19 19 Si 1.86806 * 120.00137 * 198.27204 * 17 15 14 20 20 H 1.48493 * 109.46926 * 89.99738 * 19 17 15 21 21 H 1.48498 * 109.47163 * 210.00023 * 19 17 15 22 22 H 1.48499 * 109.46678 * 329.99978 * 19 17 15 23 23 C 1.53003 * 117.50005 * 295.21649 * 14 13 12 24 24 C 1.52998 * 60.03286 * 252.49916 * 23 14 13 25 25 C 1.50696 * 109.47083 * 259.88938 * 10 9 8 26 26 O 1.20829 * 120.00196 * 240.00206 * 25 10 9 27 27 O 1.34226 * 119.99810 * 60.00635 * 25 10 9 28 28 C 1.38170 * 120.10641 * 0.23193 * 9 8 5 29 29 H 1.09002 * 109.47431 * 299.99758 * 1 2 3 30 30 H 1.09004 * 109.47653 * 59.99886 * 1 2 3 31 31 H 1.09002 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.05672 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47351 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46989 * 299.99839 * 7 6 5 35 35 H 1.09006 * 109.47155 * 59.99468 * 7 6 5 36 36 H 1.07998 * 119.97398 * 179.97438 * 8 5 4 37 37 H 1.00897 * 111.00575 * 329.18034 * 12 10 9 38 38 H 1.09009 * 109.46350 * 64.53204 * 13 12 10 39 39 H 1.08999 * 109.47261 * 304.54264 * 13 12 10 40 40 H 0.97002 * 120.00086 * 184.97377 * 18 17 15 41 41 H 1.09001 * 117.49781 * 0.02562 * 23 14 13 42 42 H 1.08999 * 117.49873 * 144.99477 * 23 14 13 43 43 H 1.08997 * 117.49911 * 107.49924 * 24 23 14 44 44 H 1.08996 * 117.50037 * 252.52107 * 24 23 14 45 45 H 0.96706 * 117.00056 * 179.97438 * 27 25 10 46 46 H 1.07999 * 119.97174 * 179.72106 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3738 0.0005 5 6 1.9237 3.6077 0.0011 6 8 1.1869 4.7495 0.0011 7 6 -0.2347 4.6042 0.0011 8 6 3.3098 3.6756 0.0005 9 6 4.0596 2.5150 -0.0011 10 6 5.5646 2.5918 -0.0022 11 1 5.8786 3.5750 0.3480 12 7 6.1083 1.5580 0.8887 13 6 7.4362 1.9388 1.3883 14 6 8.0167 0.7924 2.2187 15 6 8.6490 -0.3257 1.4306 16 1 8.5085 -1.3509 1.7399 17 6 9.4067 -0.0400 0.3148 18 7 9.8796 1.1738 0.1342 19 14 9.7615 -1.3770 -0.9407 20 1 8.6939 -1.3826 -1.9728 21 1 11.0728 -1.1143 -1.5862 22 1 9.7999 -2.6967 -0.2609 23 6 7.2929 0.4219 3.5148 24 6 8.6403 1.1445 3.5717 25 6 6.0778 2.3695 -1.4016 26 8 6.8204 1.4448 -1.6330 27 8 5.7101 3.1988 -2.3909 28 6 3.4317 1.2842 -0.0070 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3189 0.0005 33 1 -0.7007 5.5895 0.0015 34 1 -0.5439 4.0561 -0.8889 35 1 -0.5440 4.0560 0.8911 36 1 3.8029 4.6365 0.0005 37 1 5.4756 1.3687 1.6515 38 1 7.3487 2.8299 2.0100 39 1 8.0955 2.1472 0.5456 40 1 10.3509 1.3939 -0.6845 41 1 6.4029 0.9946 3.7756 42 1 7.2739 -0.6306 3.7974 43 1 8.6370 2.1928 3.8700 44 1 9.5078 0.5673 3.8914 45 1 6.0653 3.0162 -3.2716 46 1 4.0199 0.3785 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599452937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:56 Heat of formation + Delta-G solvation = -117.042383 kcal Electronic energy + Delta-G solvation = -29843.272314 eV Core-core repulsion = 25699.450490 eV Total energy + Delta-G solvation = -4143.821824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81297 -41.01693 -39.78444 -38.96043 -38.05003 -36.95179 -35.50739 -34.06953 -31.84822 -31.30203 -29.16576 -28.09613 -27.53116 -27.42496 -25.59602 -23.47549 -23.17028 -22.83854 -21.47872 -20.82075 -19.75979 -18.77093 -18.13734 -17.95881 -17.52193 -17.05633 -16.92662 -16.84324 -16.63043 -16.50188 -16.38087 -16.07650 -15.63176 -15.29616 -15.08039 -14.82786 -14.36339 -14.07224 -13.85911 -13.62903 -13.42685 -13.19814 -13.05000 -12.85878 -12.73759 -12.49173 -12.45097 -12.32166 -12.22789 -12.18228 -12.12026 -12.01574 -11.76207 -11.34087 -11.09078 -10.97461 -10.47746 -9.86127 -9.67788 -9.20851 -9.03026 -8.06014 -6.01331 0.11147 0.41887 1.37710 1.39242 1.48704 1.51068 2.05207 2.25230 2.33762 2.51754 2.62797 3.11043 3.36038 3.50491 3.81458 3.90547 4.02866 4.06961 4.07839 4.32868 4.35719 4.37631 4.40302 4.41129 4.44540 4.51566 4.57722 4.66246 4.73392 4.75331 4.77285 4.92461 4.99589 5.13617 5.15003 5.19009 5.29116 5.45868 5.49335 5.60989 5.69313 5.74598 6.07623 6.17845 6.22518 6.44530 6.50150 6.68336 6.94159 7.18443 7.58623 8.99557 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.003571 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.757402 B = 7838.745863 C = 7947.091073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.160 3.840 4 C -0.282 4.282 5 C 0.164 3.836 6 O -0.325 6.325 7 C 0.015 3.985 8 C -0.172 4.172 9 C -0.013 4.013 10 C 0.149 3.851 11 H 0.098 0.902 12 N -0.658 5.658 13 C 0.100 3.900 14 C 0.037 3.963 15 C -0.493 4.493 16 H 0.040 0.960 17 C 0.055 3.945 18 N -0.887 5.887 19 Si 0.925 3.075 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.185 4.185 24 C -0.202 4.202 25 C 0.475 3.525 26 O -0.509 6.509 27 O -0.513 6.513 28 C -0.181 4.181 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.144 0.856 37 H 0.350 0.650 38 H 0.009 0.991 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.420 0.580 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.432 8.390 -1.653 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.115 3.885 4 C -0.301 4.301 5 C 0.118 3.882 6 O -0.238 6.238 7 C -0.079 4.079 8 C -0.191 4.191 9 C -0.014 4.014 10 C 0.037 3.963 11 H 0.115 0.885 12 N -0.292 5.292 13 C -0.028 4.028 14 C 0.036 3.964 15 C -0.530 4.530 16 H 0.059 0.941 17 C -0.146 4.146 18 N -0.525 5.525 19 Si 0.753 3.247 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.222 4.222 24 C -0.241 4.241 25 C 0.315 3.685 26 O -0.395 6.395 27 O -0.326 6.326 28 C -0.201 4.201 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.182 0.818 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.172 0.828 38 H 0.027 0.973 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.281 0.719 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.826 7.906 -1.934 25.178 hybrid contribution 0.361 -0.439 -0.732 0.926 sum -23.465 7.467 -2.665 24.768 Atomic orbital electron populations 1.23412 0.76119 1.05791 1.02521 1.86122 1.23846 1.26538 1.88201 1.18662 0.91382 0.84586 0.93919 1.21456 1.01719 0.90840 1.16082 1.18586 0.90739 0.85181 0.93720 1.86087 1.21186 1.28391 1.88176 1.23416 0.76325 1.05790 1.02391 1.20202 0.91074 0.98611 1.09190 1.18780 0.91793 0.92526 0.98288 1.19701 0.90860 0.97052 0.88690 0.88454 1.59752 1.04417 1.42204 1.22821 1.21565 0.88508 0.93282 0.99422 1.18870 0.97120 0.95252 0.85158 1.20559 1.29305 0.91570 1.11527 0.94124 1.25128 0.94034 0.96740 0.98680 1.70007 1.35947 1.21194 1.25347 0.86086 0.76542 0.81159 0.80918 1.21608 1.21271 1.19710 1.22796 0.94608 0.99356 1.05479 1.22968 0.95609 0.98628 1.06858 1.23565 0.77683 0.79132 0.88153 1.90831 1.33764 1.31473 1.83454 1.84460 1.70509 1.55422 1.22193 1.20217 0.92183 0.98290 1.09379 0.91168 0.91342 0.86418 0.81804 0.85986 0.91572 0.91478 0.83870 0.82817 0.97342 0.89145 0.93653 0.89082 0.90887 0.90424 0.91658 0.71899 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -8.19 10.50 -92.34 -0.97 -9.16 16 3 C 0.16 4.21 6.68 22.49 0.15 4.36 16 4 C -0.28 -5.82 8.02 22.46 0.18 -5.64 16 5 C 0.16 3.71 6.68 22.49 0.15 3.86 16 6 O -0.33 -6.26 10.50 -92.32 -0.97 -7.23 16 7 C 0.01 0.14 9.81 113.37 1.11 1.26 16 8 C -0.17 -4.42 9.60 22.38 0.21 -4.21 16 9 C -0.01 -0.39 4.63 -19.90 -0.09 -0.48 16 10 C 0.15 5.20 2.72 43.42 0.12 5.31 16 11 H 0.10 3.10 7.71 -2.39 -0.02 3.09 16 12 N -0.66 -26.97 5.21 -499.37 -2.60 -29.57 16 13 C 0.10 4.69 5.05 86.30 0.44 5.13 16 14 C 0.04 1.85 1.89 -52.90 -0.10 1.75 16 15 C -0.49 -28.46 8.97 25.60 0.23 -28.23 16 16 H 0.04 2.40 7.88 -2.91 -0.02 2.37 16 17 C 0.06 3.21 5.09 84.65 0.43 3.64 16 18 N -0.89 -52.29 11.18 21.44 0.24 -52.06 16 19 Si 0.93 48.06 29.58 68.60 2.03 50.09 16 20 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 21 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 23 C -0.19 -7.85 9.57 30.59 0.29 -7.56 16 24 C -0.20 -9.25 9.89 30.62 0.30 -8.94 16 25 C 0.47 18.31 7.44 71.23 0.53 18.84 16 26 O -0.51 -24.94 16.74 21.96 0.37 -24.57 16 27 O -0.51 -15.09 13.34 -51.38 -0.69 -15.78 16 28 C -0.18 -5.71 8.94 22.38 0.20 -5.51 16 29 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 31 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.16 2.19 4.54 -2.91 -0.01 2.18 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.50 7.66 -2.39 -0.02 0.49 16 35 H 0.07 0.50 7.66 -2.38 -0.02 0.48 16 36 H 0.14 3.36 8.03 -2.91 -0.02 3.33 16 37 H 0.35 13.08 7.52 -89.70 -0.67 12.40 16 38 H 0.01 0.37 7.94 -2.38 -0.02 0.35 16 39 H 0.09 4.91 5.01 -2.39 -0.01 4.90 16 40 H 0.25 14.64 8.32 -92.71 -0.77 13.87 16 41 H 0.09 3.33 7.99 -2.39 -0.02 3.31 16 42 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.08 3.26 8.08 -2.39 -0.02 3.24 16 44 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.42 9.03 9.10 -74.05 -0.67 8.35 16 46 H 0.12 4.41 7.72 -2.91 -0.02 4.39 16 Total: -1.00 -75.44 386.20 2.36 -73.08 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.32 Total: 30.32 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.27 Total: -15.11 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.36 Total: -81.62 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.26 Total: -56.74 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -75.44 2.36 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599452937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.967 kcal (2) G-P(sol) polarization free energy of solvation -75.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds